BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NZ_CP034943	2,214,541	G→T	6.7%	T52T (ACC→ACA)	nth ←	endonuclease III

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP034943	2,214,541	0	G	T	6.7%	1205.8 / 16.9	423	T52T (ACC→ACA)	nth	endonuclease III
Reads supporting (aligned to +/- strand): ref base G (49/330); new base T (38/4); total (88/335)
Fisher's exact test for biased strand distribution p-value = 2.41e-25
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 430 total aligned reads displayed.

AATAATCATTTTGCTCAGTTTTTGGATGTTTTTCGCTTTATTACGATACAAACCGATTGATTTAATATCCTGCTGAAGCTCTTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTTTATA‑TTTTTGAAATAATGTTTTGGTCACTCTGTTTACAAGTGCATCTGTACATTGCGCAGATAAAGCGACTGCTACCACTAATTCAAAAGGATTGGAATGAACCAGTTCACACTCTGCGTGTGGAAACATGTCGCCTATCTTGTCTAGACAGAATTCAAT  >  NZ_CP034943/2214403‑2214678

  taatCATTTTTCTCAGTTTTTGGATGTTTTTCGCTTTATTACGATACAAACCGATTGATTTAATATCCTGCTGAAGCTCTTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTTTATA‑TTTTTGAAATAATGTTTTGGTc                                                                                                                                        <  2:4992590/140‑1 (MQ=255)

  taatCATTTTGCTCAGTTTTTGGATGTTTTTCGCTTTATTACGATACAAACCGATTGATTTAATATCCTGCTGAAGCTCTTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTTTATA‑TTTTTTAAATAAATTTTTTGTc                                                                                                                                        >  1:5590908/1‑140 (MQ=255)

   aatCATTTTGCTCAGTTTTTGGATGATTTTCGCTTTATTACGATACAAACCGATTGATTTAATATCCTGCTGAAGCTCGTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTTTATA‑TTTTTGAAATAATGTTTTGGTCa                                                                                                                                       <  1:5819790/140‑1 (MQ=255)

     tCATTTTGCTCATTTTTTGGATGTTTTTCGCTTTATTACGATACCAACCGATTGATTTAATAGCCTGATGAAGCTCTTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTTTATT‑TTTTTGAAATAATGTTTTGGTCAct                                                                                                                                     <  1:6446291/140‑1 (MQ=255)

     tCATTTTGCTCAGTTTTTGGATGTTTTTCGCTTTATTACGATACAATCCGATTGATTTAATATCCTGCTGAAGCTCTTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTTTATA‑TTTTTGAAATAATGTTTTGGTCAct                                                                                                                                     <  2:1910830/140‑1 (MQ=255)

     tCATTTTGCTCAGTTTTTGGATGTTTTTCGCTTTATTACGATACAAACCGATTGATTTAATATCCTGCTGAAGCTCTTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTTTATA‑TTTTTGAAATAATGTTTTGGTCAct                                                                                                                                     <  1:4604929/140‑1 (MQ=255)

     tCATTTTGCTCAGTTTTTGGATGTTTTTCGCTTTATTACGATACAAACCGATTGATTTAATATCCTGCTGAAGCTCTTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTTTATA‑TTTTTGAAATAATGTTTTGGTCAct                                                                                                                                     <  1:780760/140‑1 (MQ=255)

     tCATTTTGCTCAGTTTTTGGATGTTTTTCGCTTTATTACGATACAAACCGATTGATTTAATATCCTGCTGAAGCTCTTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTTTATA‑TTTTTGAAATAATGTTTTGGTCAct                                                                                                                                     <  1:7446914/140‑1 (MQ=255)

     tCATTTTGCTCAGTTTTTGGATGTTTTTCGCTTTATTACGATACAAACCGATTGATTTAATATCCTGCTGAAGCTCTTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTTTATA‑TTTTTGAAATAATGTTTTGGTCAct                                                                                                                                     <  1:6537332/140‑1 (MQ=255)

     tCATTTTGCTCAGTTTTTGGATGTTTTTCGCTTTATTACGATACAAACCGATTGATTTAATATCCTGCTGAAGCTCTTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTTTATA‑TTTTTGAAATAATGTTTTGGTCAct                                                                                                                                     <  1:6375419/140‑1 (MQ=255)

     tCATTTTGCTCAGTTTTTGGATGTTTTTCGCTTTATTACGATACAAACCGATTGATTTAATATCCTGCTGAAGCTCTTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTTTATA‑TTTTTGAAATAATGTTTTGGTCAct                                                                                                                                     <  2:2226144/140‑1 (MQ=255)

     tCATTTTGCTCAGTTTTTGGATGTTTTTCGCTTTATTACGATACAAACCGATTGATTTAATATCCTGCTGAAGCTCTTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTTTATA‑TTTTTGAAATAATGTTTTGGTCAct                                                                                                                                     <  2:4732975/140‑1 (MQ=255)

     tCATTTTGCTCAGTTTTTGGATGTTTTTCGCTTTATTACGATACAAACCGATTGATTTAATATCCTGCTGAAGCTCTTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTTTATA‑TTTTTGAAATAATGTTTTGGTCAct                                                                                                                                     <  1:2201339/140‑1 (MQ=255)

     tCATTTTGCTCAGTTTTTGGATGTTTTTCGCTTTATTACGATACAAACCGATTGATTTAATATCCTGCTGAAGCTCTTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTTTATA‑TTTTTGAAATAATGTTTTGGTCAct                                                                                                                                     <  1:3048211/140‑1 (MQ=255)

     tCATTTTGCTCAGTTTTTGGATGTTTTTCGCTTTATTACGATACAAACCGATTGATTTAATATCCTGCTGAAGCTCTTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTTTATA‑TTTTTGAAATAATGTTTTGGTCAct                                                                                                                                     <  1:2898523/140‑1 (MQ=255)

     tCATTTTGCTCAGTTTTTGGATGTTTTTCGCTTTATTACGATACAAACCGATTGATTTAATATCCTGCTGAAGCTCTTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTTTATA‑TTTTTGAAATAATGTTTTGGTCAct                                                                                                                                     <  2:7387550/140‑1 (MQ=255)

     tCATTTTGCTCAGTTTTTGGATGTTTTTCGCTTTATTACGATACAAACCGATTGATTTAATATCCTGCTGAAGCTCTTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTTTATA‑TTTTTGAAATAATGTTTTGGTCAct                                                                                                                                     <  2:5712906/140‑1 (MQ=255)

     tCATTTTGCTCAGTTTTTGGATGTTTTTCGCTTTATTACGATACAAACCGATTGATTTAATATCCTGCTGAAGCTCTTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTTTATA‑TTTTTGAAATAATGTTTTGGTCAct                                                                                                                                     <  2:7543554/140‑1 (MQ=255)

                aGTTTTTGGATGTTTTTCGCTTTATTACGATACAAACCTATTGATTTAATATCCTGCTGAAGCTCTTCCAGCGAAACAGACAAATAGTCTTCCGGCCGTTTATA‑TTTTTGAAATAATGTTTTGGTCACTCTGTTTACAAg                                                                                                                          <  2:3092596/140‑1 (MQ=255)

                aGTTTTTGGATGTTTTTCGCTTTATTACGATACAAACCGATTGATTTAATATCCTGCTGAAGCTCTTCCCGCGAAACAGCCAAATAGTCTTCCGGCCGTTTATA‑TTTTTGAAATAATGTTTTGGTCACTCTGTTTACAAg                                                                                                                          <  1:5245989/140‑1 (MQ=255)

                aGTTTTTGGATGTTTTTCGCTTTATTACGATACAAACCGATTGATTTAATATCCTGCTGAAGCTCTTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTTTATA‑TTTTTGAAATAATGTTTTGGTCACTCTGTTTACAAg                                                                                                                          <  2:1373653/140‑1 (MQ=255)

                aGTTTTTGGATGTTTTTCGCTTTATTACGATACAAACCGATTGATTTAATATCCTGCTGAAGCTCTTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTTTATA‑TTTTTGAAATAATGTTTTGGTCACTCTGTTTACAAg                                                                                                                          <  2:6053278/140‑1 (MQ=255)

                aGTTTTTGGATGTTTTTCGCTTTATTACGATACAAACCGATTGATTTAATATCCTGCTGAAGCTCTTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTTTATA‑TTTTTGAAATAATGTTTTGGTCACTCTGTTTACAAg                                                                                                                          <  2:1466025/140‑1 (MQ=255)

                aGTTTTTGGATGTTTTTCGCTTTATTACGATACAAACCGATTGATTTAATATCCTGCTGAAGCTCTTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTTTATA‑TTTTTGAAATAATGTTTTGGTCACTCTGTTTACAAg                                                                                                                          <  1:4405585/140‑1 (MQ=255)

                aGTTTTTGGATGTTTTTCGCTTTATTACGATACAAACCGATTGATTTAATATCCTGCTGAAGCTCTTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTTTATA‑TTTTTGAAATAATGTTTTGGTCACTCTGTTTACAAg                                                                                                                          <  2:3685942/140‑1 (MQ=255)

                aGTTTTTGGATGTTTTTCGCTTTATTACGATACAAACCGATTGATTTAATATCCTGCTGAAGCTCTTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTTTATA‑TTTTGGAAATAATGTTTTGGTCACTCTGTTTACAAg                                                                                                                          <  2:5447725/140‑1 (MQ=255)

                  tttttGGCTGTTTTTCGCTTTATTACGATACAAACCGATTGATTTAAGATCCTGCTGAAGCTCTTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTGTATA‑TTTTTGAAATAATGTTTTGGTCACTCTGTTTACAAGTg                                                                                                                        <  2:5205782/140‑1 (MQ=255)

                  tttttGGATGTTTTTCGCTTTATTACTATACAAACCGATTGATTTAATATCCTGCTGAAGCTCTTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTTTATA‑TTTTTGAAATAATGTTTTGGTCACTCTGTTTACAAGTg                                                                                                                        <  2:2992457/140‑1 (MQ=255)

                  tttttGGATGTTTTTCGCTTTATTACGATACAAACCGATTGATTTAATATCCTGCTGAAGCTCTTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTTTATA‑TTTTTGAAATAATGTTTTGGTCACTCTGTTTACAAGTg                                                                                                                        <  1:3217149/140‑1 (MQ=255)

                  tttttGGATGTTTTTCGCTTTATTACGATACAAACCGATTGATTTAATATCCTGCTGAAGCTCTTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTTTATA‑TTTTTGAAATAATGTTTTGGTCACTCTGTTTACAAGTg                                                                                                                        <  1:1402490/140‑1 (MQ=255)

                  tttttGGATGTTTTTCGCTTTATTACGATACAAACCGATTGATTTAATATCCTGCTGAAGCTCTTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTTTATA‑TTTTTGAAATAATGTTTTGGTCACTCTGTTTACAAGTg                                                                                                                        <  1:91236/140‑1 (MQ=255)

                  tttttGGATGTTTTTCGCTTTATTACGATACAAACCGATTGATTTAATATCCTGCTGAAGCTCTTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTTTATA‑TTTTTGAAATAATGTTTTGGTCACTCTGTTTACAAGTg                                                                                                                        <  2:2065844/140‑1 (MQ=255)

                  tttttGGATGTTTTTCGCTTTATTACGATACAAACCGATTGATTTAATATCCTGCTGAAGCTCTTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTTTATA‑TTTTTGAAATAATGTTTTGGTCACTCTGTTTACAAGTg                                                                                                                        <  2:2386290/140‑1 (MQ=255)

                  tttttGGATGTTTTTCGCTTTATTACGATACAAACCGATTGATTTAATATCCTGCTGAAGCTCTTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTTTATA‑TTTTTGAAATAATGTTTTGGTCACTCTGTTTACAAGTg                                                                                                                        <  2:3165694/140‑1 (MQ=255)

                  tttttGGATGTTTTTCGCTTTATTACGATACAAACCGATTGATTTAATATCCTGCTGAAGCTCTTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTTTATA‑TTTTTGAAATAATGTTTTGGTCACTCTGTTTACAAGTg                                                                                                                        <  2:3207834/140‑1 (MQ=255)

                  tttttGGATGTATTTCGCTTTATTACGATACAAACCGATTGATTTAATATCCTGCTGAAGCTCTTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTTTATA‑TTTTTGAAATAATGTTTTGGTCACTCTGTTTACAAGTg                                                                                                                        <  2:1783144/140‑1 (MQ=255)

                     ttGGATGTTTTTCGCTTTATTACTATACAAACCGATTGATTTAATATCCTGCTGAAGCTCTTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTTTATA‑TTTTTGAAATAATGTTTTGGTCACTCTGTTTACAAGTGCAt                                                                                                                     <  2:7672584/140‑1 (MQ=255)

                       ggATGTTTTTCGCTTTATTACGATACAAACCGATTGATTTAATATCCTGCTGAAGCTCTTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTTTATA‑TTTTTGAAATAATGTTTTGGTCActct                                                                                                                                   >  2:4041140/1‑124 (MQ=255)

                            tttttCGCTTTATTACGATACAAACCGATTGATTTAATATCCTGCTGAAGCTCTTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTTTATA‑ATTTTGAAATAATGTTTTTGTGACACTGTTTAAAAGTGCATCTGTACa                                                                                                              >  2:1014409/1‑140 (MQ=255)

                            tttttCGCTTTATTAAGATACAAACCGATTGATTTAATATCCTGCTGAAGCTCTTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTTGATA‑TTTTTGAAATAATGTTTTGGTCACTCTGTTTACAAGTGCATCTGTACa                                                                                                              <  2:1946788/140‑1 (MQ=255)

                                 cGCTTTATTACGATACAAACCGATTGATTTAATATCCTGCTGAAGCTCTTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTTTATA‑TTTTTGAAATAATGTTTTGGTCACTCTGTTTACAAGTGCATCTGTACATTgcg                                                                                                         <  1:2399832/140‑1 (MQ=255)

                                 cGCTTTATTACGATACAAACCGATTGATTTAATATCCTGCTGAAGCTCTTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTTTATA‑TTTTTGAAATAATGTTTTGGTCACTCTGTTTACAAGTGCATCTGTACATTgcg                                                                                                         <  2:5775930/140‑1 (MQ=255)

                                 cGCTTTATTACGATACAAACCGATTGATTTAATATCCTGCTGAAGCTCTTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTTTATA‑TTTTGGAAATAATGTTTTGGTCACTCTGTTTACAAGTGCATCTGTACATTgcg                                                                                                         <  2:161103/140‑1 (MQ=255)

                                 cGCTTTATTACGATACAAACCGATTGATTTAATATCCTGCTGAAGCTCTTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTTGATA‑TTTTTGAAATAATGTTTTGGTCACTCTGTTTACAAGTGCATCTGTACATTgcg                                                                                                         <  2:788069/140‑1 (MQ=255)

                                 cGCTTTATTACGATACAAACCGATTGATTTAATATCCTGCTGAAGCTATTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTTTATA‑TTTTTGAAATAATGTTTTGGTCACTCTGTTTACAAGTGCATCTGTACATTgcg                                                                                                         <  2:6199208/140‑1 (MQ=255)

                                 cGCTTTATTACGAAACAAACCGATTGATTTAATATCCTGCTGAAGCTCTTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGATTATA‑TTTTTGAAATAATGTTTTGGTCACTCTGTTTACAAGTGCATCTGTACATTgcg                                                                                                         <  2:4490348/140‑1 (MQ=255)

                                      tattaCGATACAAACCGATTGATTTAATATCCTGCTGAAGCTCTTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTTTATA‑TTTTTGTAATAAAGTTTTTGTCACTCTGTTTACAAGTGGAAATGTCCATTGCGCAGAt                                                                                                    >  1:7649934/1‑140 (MQ=255)

                                         taCTATACAACCCGATTTATTTAATATCCTGCTGAAGCTCTTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTTTATA‑TTTTTTAAATAATTTTTTGGTCACTCTGTTTACAAGTGCATCTGTACATTGCGCAGATaaa                                                                                                 <  1:3093086/140‑1 (MQ=255)

                                             aTACAAACCGATTGATTTAATATCCTGCTTAAGATCTTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTTTATA‑TTTTTGAAATAATGTTTTGGTCACTCTGTTTACAAGTGCATCTGTACATTGCGCAGATAAAGCGa                                                                                             <  2:6914999/140‑1 (MQ=255)

                                              tACAAACCGATTGATTTAATATCCTGCTGAATCTCTTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTGTAAA‑TTTTTGAAATTATGTTTTTGTCACTAGGTTTACAAGTTCATCAGGAAAGTGCGCAGATAAAGCgtc                                                                                            >  2:1185138/1‑138 (MQ=255)

                                                   aCCGATTGATTTAATATCCTGCTGAAGCTCTTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTTTATA‑TTTTTGAAATAATGTTTTGGTCAct                                                                                                                                     <  1:6874083/94‑1 (MQ=255)

                                                   aCCGATTGATTTAATATCCTGCTGAAGCTCTTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTGTATA‑TTTTTGAAATAATTTTTTTGTGACTCTGTTTTAAAGTGCATCGGTAAAGTGGGCAGATAAAGCGACAGcga                                                                                       >  1:2105121/1‑138 (MQ=255)

                                                       attgattTAATATCCTGCTGAAGCTCTTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTTTATA‑TTTTTGAAATAATGTTTTTGTAAATCTGTTTACAAGTTCATATTTAAATTGCGCAGATAAAACGACTGCTACCAc                                                                                   >  2:7061582/1‑140 (MQ=255)

                                                       attgattTAATATCCTGCTGAAGCTCTTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTTTATA‑TTTTTGAAATAATGTTTTGGTCACTCTGTTTACAAGTg                                                                                                                        <  1:7707405/103‑1 (MQ=255)

                                                       attgattTAATATCCTGCTGAAGCTCTTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTGTATA‑TTTTTGTAATAAATGTTTGGTGACGCTGTTTACAATTGCATCTGTACCATGCGCAGATAAATCCACTGCTACCAc                                                                                   >  1:6269104/1‑140 (MQ=255)

                                                                     ctgcggATGGTCTTCCCGCTAAACCGCAAAATAGTATTCCGGCCGTTTTTA‑TTTTTGAAATATTGTTTTTGTCACTCTGTTTAAATGTGCATGTGTACTTTGCGCCGCTAAAGCGACTGCTACCACTAATTCAAAAGGAt                                                                     <  1:194156/140‑1 (MQ=255)

                                                                      tgctgAAGCTCTTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTTTATA‑TTTTTGAAATAATGTTTTGGTCACTCTGTTTACAAGTGCATCTGTACATTGCGCAGATAAAGCGACTGCTACCACTAATTCAAAAGGAtt                                                                    >  2:4187957/1‑140 (MQ=255)

                                                                      tgctgAAGCTCTTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTGTTTATTTTTTTAAAAAATGTTTT‑TTGACACGGTTTACAATTGGATCTGTCAAATTAGCACATAAAGACACTGCAACCACGAATTAAAAAgagtt                                                                    >  1:725263/1‑136 (MQ=255)

                                                                      tgctgAAGCTCTTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTGTTTA‑TTTTTTAAATAATTTTTTTGTCCCTCTGTTTACAAGTGCATCTGTACATTTCGCAGATAAAGCGACTGCTACCACAAAATCAAAAGGAtt                                                                    >  1:5445427/1‑140 (MQ=255)

                                                                      tgctgAAGCTCTTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTGTATA‑TTTTTTTAATAATTTTTTTGTGACTCTGTTTAAAAGTGCATCTGTAAATTTCGCAGATAAAGCGACATCTACCACAAATTAAAAAGGCtt                                                                    >  1:3940174/1‑140 (MQ=255)

                                                                      tgctgAAGCTCTTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGGTTTTA‑TTTTTGAAATAATGTTTTTGTGACTCGGTTTAAAAGTGCATGTGTAAAATGGGCAGATAAAGCGACTGATACCACTAATTCAAAACGAtt                                                                    >  1:5363874/1‑140 (MQ=255)

                                                                      tgctcAAGCTCTTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTGTATA‑TTTTTGAAAAAAAGGTTTTGTGACTGAGTTTTAAACCGCATCAGTAAAATTCGCACATAAATAGACAGCTACCACAAATTCaaaaacata                                                                    >  1:3838934/1‑135 (MQ=255)

                                                                        ctgAAGCTCTTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTTTATA‑TTTTTTAAATAATGTTTTTGTCACTCTGTTTACAAGTGCAACTGTACATTGCGCAGATAAAGCGACTGCTACCACTAAATCAAAAGGATTgg                                                                  >  2:6416659/1‑140 (MQ=255)

                                                                        ctgAAGCTCTTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTTTATA‑TTTTTGAAATAATGTTTTGGTCACTCTGTTTACAAGTGCATCTGTACATTGCGCAGATAAAGCGACTGCTACCACTAATTCAAAAGGAt                                                                     <  1:672428/137‑1 (MQ=255)

                                                                           aaGCTCTTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTTTATA‑TTTTTGAAATAATGTTTTGGTCACTCTGTTTACAAGt                                                                                                                         <  1:4968489/82‑1 (MQ=255)

                                                                              ctctTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTTTATA‑TTTTTGAAATAATGTTTTGGTCACTCTGTTTACAAGTGCATCTGTACATTGCGCAGATAAAGCGACTGCTACCACTAATTCAAAAGGATTGGAATGaa                                                            <  1:3544577/140‑1 (MQ=255)

                                                                              ctctTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTTTATA‑TTTTTGAAATAATGTTTTGGTCACTCTGTTTACAAGTGCATCTGTACATTGCGCAGATAAAGCGACTGCTACCACTAATTCAAAAGGATTGGAATGaa                                                            <  1:410281/140‑1 (MQ=255)

                                                                              ctctTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTTTATA‑TTTTTGAAATAATGTTTTGGTCACTCTGTTTACAAGTGCATCTGTACATTGCGCAGATAAAGCGACTGCTACCACTAATTCAAAAGGATTGGAATGaa                                                            <  2:7181242/140‑1 (MQ=255)

                                                                              ctctTCCAGCGAAACAGCAAAATAGTCTTCCGGCCTTTTATA‑TTTTTGAAATAATGTTTTGGTCACTCTGTTTACAAGTGCATCTGTACATTGCGCAGATAAAGCGACTGCTACCACTAATTCAAAAGGATTGGAATGaa                                                            <  1:4550602/140‑1 (MQ=255)

                                                                              ctctTCCAGCGAAACAGCAAAATAGTCTTCCGGCCGTTTATA‑TTTTTGAAATAATGTTTTGGTCACTCTGTTTACAAGTGCATCTGTACATTGCGCAGATAAAGCGACTGCTACCACTAATTCAAAAGGATTGGAATGaa                                                            <  1:615839/140‑1 (MQ=255)

                                                                              ctctTCCAGCGAAACAGACAAATAGTCTTCCGGCCTTTTATA‑TTTTTGAAATAATGTTTTGGTCACTCTGTTTACAAGTGCATCTGTACATTGCGCAGATAAAGCGACTGCTACCACTAATTCAAAAGGATTGGAATGaa                                                            <  2:3978874/140‑1 (MQ=255)

                                                                               tctTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTTTATA‑TTTTTGAAATAATGTTTTGGTCACTCTGTTTACAAGTGCATCTGTACATTGCGCAGATAAAGCGACTGCTACCACTAATTCAAAAGGATTGGAATGAAc                                                           <  2:4824170/140‑1 (MQ=255)

                                                                                ctgccACCGAAACAGCCAAATAGTCTTCCGGCCGTTTATA‑TTTTTGAAATAATGTTTTGGTCACTCTGTTTACAAGTGCATCTGTACATTGCGCAGATAAAGCGACTGCTACCACTAATTCAAAAGGATTGGAATGAAcc                                                          <  1:1111337/137‑1 (MQ=255)

                                                                                ctTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTTTATA‑TTTTTGAAATAATGTTTTGGTCACTCTGTTTACAAGTGCATCTGTACATTGCGCAGATAAAGCGACTGCTACCACTAATTCAAAAGGATTGGAATGAAcc                                                          <  1:3726152/140‑1 (MQ=255)

                                                                                agtCCAGCGAAACAGCCAAATAGACTTCCGGCCGTGTCGA‑TGTTTGAAATACTGTTTTGGTCACTCTGTTTACAAGTGCATCTGTACATTGCGCAGATAAAGCGACTGCTACCACTAATTCAAAAGGATTGGAATGAAcc                                                          <  2:4946044/138‑1 (MQ=255)

                                                                                  tCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTGTATT‑TTTTTTAAATAATTTTTTTTTGAATCTTTTTACAAGTGCAACAGTACATTTCGCAGATAAAACGACAGCTACCACTAAATAAAAAGGAATTGAATGAAACaa                                                        >  1:4729681/1‑139 (MQ=255)

                                                                                     aGCGAAACAGCCAAATAGTCTTCCGGCCGTGTTTA‑TTTTTTGAATAAAGTTTTGGTGACTCTGTTTTCAATTGCATCTGTACAGTTGGCCGATAAAGAGACTGCTACCACAAAATAAAAAGGATTTGCATTAACCAggta                                                     >  1:1656754/1‑137 (MQ=255)

                                                                                                   aTAGTCTTCCGGCCGTTTATA‑TTTTTGAAATAATGTTTTGGTCACTCTGTTTACAAGTGCATCTGTACATTGCGCAGATAAAGCGACTGCTACCACTAATTCAAAAGGATTGGAATGAACCAGTTCACACTCTGCGtgtg                                       <  2:5581059/140‑1 (MQ=255)

                                                                                                   aTAGTCTTCCGGCCGTTTATA‑TTTTTGAAATAATGTTTTGGTCACTCTGTTTACAAGTGCATCTGTACATTGCGCAGATAAAGCGACTGCTACCACTAATTCAAAAGGATTGGAATGAACCAGTTCACACTCTGCGtgtg                                       <  2:2181796/140‑1 (MQ=255)

                                                                                                              gCCGTTTATA‑TTTTTGAAATAATGTTTTTGTCACTCTGTTTAAAAGTGCATCTGTAAAATTCGCAGATAAAACGACATCTACCAAAAATTAAAAAGGATTGGAATTAAACACTTCACACAATGCGTGTTGAAACaattac                            >  2:6544912/1‑135 (MQ=255)

                                                                                                              gCCGTTTATA‑TTTTTGAAATAATGTTTTTGTAACTATGTTTACAATTTCATCTGTACATTGCGCAGATAAAGCGAATGCTACCACTAATTCAAAAGGATTGTAATGAACCAGTTCACACACTGCGTGTGGAACCaaggag                            >  2:3773897/1‑135 (MQ=255)

                                                                                                              gCCGTGTATA‑TTTTTGAAATAAAGTTTTGGTCACACTGTTTAAAAGTGCATCTGTACATTTCGCAGATAAAGCGAATGCTACCAATAATTAAAAAGGATTGGAATGAACCACTTCAACATCTGCGTGTGGAAACCTGTCg                            >  2:6812848/1‑140 (MQ=255)

                                                                                                               ccGTTTATA‑TTTTTGAAATACTGTTTGGGTCACTCTCTTTACAAGTGCATCTGTACATTGCGCAGATAAAGCGACTGCTACCACTAATTCAAAAGGATTGGAATGAACCAGTTCACACTCTGCGTGTGGAAACATGTCGc                           <  2:4242608/140‑1 (MQ=255)

                                                                                                               ccGTTTATA‑TTTTTGAAATAATGTTTTGGTCACTCTGTTTACAAGTGCATCTGTACATTGCGCAGATAAAGCGACTGCTACCACTAATTCAAAAGGATTGGAATGAACCAGTTCACACTCTGCGTGTGGAAACATGTCGc                           <  2:6269104/140‑1 (MQ=255)

                                                                                                               ccGTTTATA‑TTTTTGAAATAATGTTTTGGTCACTCTGTTTACAAGTGCATCTGTACATTGCGCAGATAAAGCGACTGCTACCACTAATTCAAAAGGATTGGAATGAACCAGTTCACACTCTGCGTGTGGAAACATGTCGc                           <  2:5951457/140‑1 (MQ=255)

                                                                                                                   ttATC‑TTTTTGACATAATGTTTTGGTCACTCTGTTTACAAGTGCATCTGTACATTGCGCAGATAAAGCGACTGCGACCACTAATTCAAAAGGATTGGAATGAACCAGTTCACACTCTGCGTGTGGAAACATGTCGCCTAt                       <  2:4709577/140‑1 (MQ=255)

                                                                                                                   ttATA‑TTTTTGAAATAATGTTTTGGTCACTCTGTTTACAAGTGCATCTGTCCATTGCGCAGATAAAGCGACTGCTACCACTAATTCAAAAGGATTGGAATGAACCAGTTCACACTCTGCGTGTGGAAACATGTCGCCTAt                       <  2:3868285/140‑1 (MQ=255)

                                                                                                                   ttATA‑TTTTTGAAATAATGTTTTGGTCACTCTGTTTACAAGTGCATCTGTACATTGCGCAGATAAAGCGACTGCTACCACTAATTCAAAAGGATTGGAATGAACCAGTTCACACTCTGCGTGTGGAAACATGTCGCCTAt                       <  1:2579485/140‑1 (MQ=255)

                                                                                                                   ttATA‑TTTTTGAAATAATGTTTTGGTCACTCTGTTTACAAGTGCATCTGTACATTGCGCAGATAAAGCGACTGCTACCACTAATTCAAAAGGATTGGAATGAACCAGTTCACACTCTGCGTGTGGAAACATGTCGCCTAt                       <  1:4187957/140‑1 (MQ=255)

                                                                                                                   ttATA‑TTTTTGAAATAATGTTTTGGTCACTCTGTTTACAAGTGCATCTGTACATTGCGCAGATAAAGCGACTGCTACCACTAATTCAAAAGGATTGGAATGAACCAGTTCACACTCTGCGTGTGGAAACATGTCGCCTAt                       <  1:4841782/140‑1 (MQ=255)

                                                                                                                   ttATA‑TTTTTGAAATAATGTTTTGGTCACTCTGTTTACAAGTGCATCTGTACATTGCGCAGATAAAGCGACTGCTACCACTAATTCAAAAGGATTGGAATGAACCAGTTCACACTCTGCGTGTGGAAACATGTCGCCTAt                       <  2:2867703/140‑1 (MQ=255)

                                                                                                                   ttATA‑TTTTTGAAATAATGTTTTGGTCACTCTGTTTACAAGTGCATCTGTACATTGCGCAGATAAAGCGACTGCTACCACTAATTCAAAAGGATTGGAATGAACCAGTTCACACTCTGCGTGTGGAAACATGTCGCCTAt                       <  1:5062025/140‑1 (MQ=255)

                                                                                                                     ata‑tTTTTGAAATAATGTTTTGGTCACTCTGTTTACAAGTGCATCTGTACATTGCGCAGATAAAGCGACAGCTACCACTAATTCAAAAGGATTGGAATGAACCAGTTCACACTCTGCGTGTGGAAACATGTCGCCTATCt                     <  2:2105121/140‑1 (MQ=255)

                                                                                                                     ata‑tTTTTGAAATAATGTTTTGGACACTCTGTTTAAAAGTGCATCTGTACATTGCGCAGATAAAGCGACTGCTACCACTAATTCAAAAGGATTGGAATGAACCAGTTCACACTCTGCGTGTGGAAACATGTCGCCTATCt                     <  2:5108674/140‑1 (MQ=255)

                                                                                                                           tttGAAATAATGTTTGGGTCACTCTGTTTACAAGTGCATCTGTACATTGCGCAGATAAAGCGACTGCTACCACTAATTCAAAAGGATTGGAATGAACCAGTTCACACTCTGCGTGTGGAAACATGTCGCCTATCTTGTCt                <  2:4414928/140‑1 (MQ=255)

                                                                                                                            ttGAAATAATGTTTTGGTCACTCTGTTTACAAGTGCATCTGTACATTGCGCAGATAAAGCGACTGCTACCACTAATTCAAAAGGATTGGAATGAACCAGTTca                                                    <  1:2010013/103‑1 (MQ=255)

                                                                                                                            ttGAAATAATGTTTTGGTCACTCTGTTTACAAGTGCATCTGTACATTGCGCAGATAAAGCGACTGCTACCACTAATTCAAAAGGATTGGAATGAACCAGTTca                                                    >  2:2010013/1‑103 (MQ=255)

                                                                                                                              gAAATAATGTTTTGGTCACTCTGTTTACAAGTGCATCTGTACATTGCGCAGATAAAGCGACTGCTACCACTAATTCAAAAGGATTGGAATGAACCAGTTCACACTCTGCGTGTGGAAACATGTCGCCTATCTTGTCTAGa             <  2:3385852/140‑1 (MQ=255)

                                                                                                                                        tttGGTCACTCTGTTTACAAGTGCATCTGTACATTGCGCAGATAAAGCGACTGCTACCACTAATTCAAAAGGATTGGAATGAACCAGTTCACACTCTGCGTGTGGAAACATGTCGCCTATCTTGTCTAGACAGAATTCaa   <  1:1014409/140‑1 (MQ=255)

                                                                                                                                         ttGGTGACTCTGTTTACAAGTGCATCTGTACATTGCGCAGATAAAGCGACTGCTACCACTAATTCAAAAGGATTGGAATGAACCAGTTCACACTCTGCGTGTGGAAACATGTCGCCTATCTTGTCTAGACAGAATTCAAt  <  2:6635837/140‑1 (MQ=255)

AATAATCATTTTGCTCAGTTTTTGGATGTTTTTCGCTTTATTACGATACAAACCGATTGATTTAATATCCTGCTGAAGCTCTTCCAGCGAAACAGCCAAATAGTCTTCCGGCCGTTTATA‑TTTTTGAAATAATGTTTTGGTCACTCTGTTTACAAGTGCATCTGTACATTGCGCAGATAAAGCGACTGCTACCACTAATTCAAAAGGATTGGAATGAACCAGTTCACACTCTGCGTGTGGAAACATGTCGCCTATCTTGTCTAGACAGAATTCAAT  >  NZ_CP034943/2214403‑2214678

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`