| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 2,991,262 | G→T | 21.2% | intergenic (+63/‑144) | gbsR → / → bslA | transcriptional regulator GbsR/biofilm‑surface layer protein BslA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 2,991,262 | 0 | G | T | 21.2% | 424.3 / 50.8 | 229 | intergenic (+63/‑144) | gbsR/bslA | transcriptional regulator GbsR/biofilm‑surface layer protein BslA |
| Reads supporting (aligned to +/- strand): ref base G (57/117); new base T (53/2); total (110/119) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.67e-18 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 230 total aligned reads displayed.
GATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTG‑TATTTGGCCGTTCAGAGGAGGTGAAAAGCGGGCAGGCCTGAATATTTTTATAACTTTTTAGGGGGAATT > NZ_CP034943/2991125‑2991400 | aTTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTTTTGTTTTTTTTTTAATTAATAC‑AAAATTG‑aaa > 2:2418401/1‑140 (MQ=255) aTTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTTTTGTTTTTTATGTAATTTATAC‑AATTTTT‑aaa > 2:3177146/1‑140 (MQ=255) aTTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTGTTATTTTTTATGTAATTAATAC‑AAATTTT‑aaa > 2:4292684/1‑140 (MQ=255) ttGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTGTTTTTTATGTAATTAATAC‑AAATTTT‑aaaa > 2:5607991/1‑140 (MQ=255) ttGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTTTTGTTTTTTTTTTAATTACGAC‑AAATTTT‑aaaa > 2:7178601/1‑140 (MQ=255) ggCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTTAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAAt < 2:3796039/140‑1 (MQ=255) ggCTGAAACGGATTGCTGACTCGGTGACGCGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAAt < 1:7756512/140‑1 (MQ=255) gCTGAAACGGCTTGCTGAATCGGTGCATAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTCTGAAACCGGGCGTTTTTTTGTTATTTTTTATGTAAAAAATAC‑AAATTTG‑aaaaaaa > 2:4501659/1‑138 (MQ=255) gCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGACACCGGGCGTTTTTGTTTTTTTTTTTTTGTTATTAATAC‑AAATTTT‑aaaaaaa > 1:5018311/1‑138 (MQ=255) gCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATTTTAATTCTAC‑AAAATTG‑aaaaaaa > 1:5856696/1‑138 (MQ=255) gCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTATATTTTATTTAATTACTAC‑AAAAATG‑aaaaaaa > 2:4269076/1‑138 (MQ=255) aaaCGGCTTGCTGAATCGTTGCAGAGCGGGTAATTTTTTAAATTTATACCTATTCAAAAAAAGTAAAAAAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACggg < 1:554218/140‑1 (MQ=255) cgtcTTGCTTATTCTGGGCAGAGCTGGCAAATTTTTAAATTTATACCGATTCAAAAAAATTAAAACAAACACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGaaa < 1:6313899/137‑1 (MQ=255) cGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGaaa < 1:5328512/140‑1 (MQ=255) cTTGCTGAATCGGTTCAGAGCGGGTAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAAc < 2:2677616/140‑1 (MQ=255) cTTGCTGAATCGGTGCAGAGCGGGGAACTTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTGTTTTTGTTTTTTATGTAATTACTAC‑AAAGTTG‑ACAAATAACGGaacacc > 2:4186419/1‑136 (MQ=255) cTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAATGTCAAACAAAAACGCCGGGGAAACCGGGCGTGTGTTTGTGCTTGTTTATTTAATTACGAC‑AAATTTG‑TATAATACgggggagac > 2:3575917/1‑134 (MQ=255) cTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAATACAAAAACGCCTGGGAAACCGGGCGTGTTTTTGTTCTTTTTTAGTTAATTTTAAC‑AAAATTT‑GAAAATAAGGGaaaaaa > 1:5380618/1‑139 (MQ=255) cTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAATACAAAAACGCCTGGGAAACCGGGCGTGGTTTTGTTATTTTTTATGTAATTTCAAC‑AAAATTT‑AAAAAAAAGGGGAAAAc > 2:3842312/1‑140 (MQ=255) cTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTTGTGTTTTTTTTTTAATTTATAA‑CAATTTG‑AAAAATAAGGGaaaaaa > 1:3529419/1‑139 (MQ=255) cTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGGTTTTTTTGTTTTTTTTTTTTTTAATAA‑AAAATTT‑AAAAATAATGGaaaaaa > 1:3062179/1‑139 (MQ=255) ttGCTTAATCGGTGCAGCGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAACACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACa < 1:6951133/140‑1 (MQ=255) ttGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTGTTTTTTATTTAAATAAAAA‑AAATTTG‑AAAAATAAGGGAAAAACa > 2:4352921/1‑140 (MQ=255) ttGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTGTGTGTTCTTTTTTATGTAATTAATAA‑CAATTTG‑AAAAATACGGGCAAAACa > 2:4836986/1‑140 (MQ=255) gatGAATCTGTGAATATCTGGTAAATTTTTAAATTTATACCTTTTTTAAAAATTTTAAAAAAAAACTACTGTGAAACAGTTAGTTTTTTTGTTATTTTTTATTTTATTTATAT‑TAATTTT‑AAAAATATGTGATAAACAT‑c < 2:5487004/138‑1 (MQ=255) actggggCAGAGCGGGGAAATTTTTAAATTTATACCGATTTAAAAAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACAT‑CCCAtt < 1:5944118/134‑1 (MQ=255) tcAGAGCGTTGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAAAAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACAT‑CCCATTTACTTc < 2:7581381/139‑1 (MQ=255) agagCGGGTAAATTTTTAAATTTATACCGATTGAAACAAATTAAAAAAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACAT‑CCCATTTACTTCCa < 2:2743553/140‑1 (MQ=255) agCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTTTTGTTTTTTTTTTAATTAAGAC‑AAATTTT‑AAAAAAAAGGGAAAAAAAA‑ACCCATTACTTACaaa > 1:5865964/1‑140 (MQ=255) accGGGGAAATTATTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTATTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGACAAACAT‑CCCATGTACTTCCaaa < 2:6694239/138‑1 (MQ=255) ggtaaaTTTTTAAATTTATACCTATTGAAAAAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAatat < 2:5931809/137‑1 (MQ=255) gggACATTTATAAAGTGATACCGATTCACACAAAGTAAAACAAACACGCCGCGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAatat < 2:4528374/140‑1 (MQ=255) gggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTATTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAatat < 2:1564782/140‑1 (MQ=255) gcgAAATTTTTAAATTTATACCGATTGAAACAAATTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAatat < 2:4216463/138‑1 (MQ=255) ggAAATTTTTAAATTTATCCCGAGTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTACTTACTAC‑CAAATTG‑AAAAATTCCGGTAAAACAT‑GCCAGTTACATACAAAAAAtt > 2:5204667/1‑140 (MQ=255) ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAATCGCCTGGGAAACCGGGCGTTGTTTTGTTTTTTTTTTTGTTATTTATAA‑AAAATTT‑TAAAAAAAGGGTAAAAAAT‑ACAAATTAGTTGCAAAAAAtt > 1:3295991/1‑140 (MQ=255) ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTGTTTTTTATGTACTTACTAA‑AAAATTT‑TAAAATAAGGGGAAAACAG‑CCCATTTACTTGCaaaaaggg > 2:5944118/1‑136 (MQ=255) ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTGTTTTTTATGTAATTAATAC‑AAATTTG‑TAAAATAAGGGAAAAAAAA‑ACCAATTAATTGCAAAATAtt > 2:5759104/1‑140 (MQ=255) ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTAGTTTTTTTGTAATTAATAC‑AAAATTG‑AAAAAAAAGGGAAAAACAT‑ACCAATTAAGTCCAAAataat > 2:3357092/1‑138 (MQ=255) ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTTTTTTTTTTTTTTTTATTTATACAAAATTTT‑TAAATAATGGAAAAAAAAA‑CCCATTTA‑TTACAAAatagt > 1:2337531/1‑138 (MQ=255) ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTGTTGTTTTTTTTTTTATTAAAAA‑AAATTTG‑AAAAATAACGGAAAAACAA‑ACCAGTTACTTGCAAAAAAtt > 1:3218671/1‑140 (MQ=255) ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTGTTTGTTGTTTTTTTTTTTATTAATAA‑AAATTTT‑AAAAATAAGGGAAAAAAAA‑CACACTTAATTCAaaaaaaat > 1:76108/1‑136 (MQ=255) ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGGTTTTGTTGTTTTTTTTGTTATTTATAA‑AAATTTT‑TAAAATAGGGGGAAAAAAT‑ACCAGTTTATTACAAAAAAtt > 1:4736132/1‑140 (MQ=255) taaaTTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTCTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATAttt < 2:4039502/139‑1 (MQ=255) ttttAAATTTATCCCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATgg < 2:6240997/140‑1 (MQ=255) atcccGTTTGAAAAAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATg < 1:1612185/137‑1 (MQ=255) ataCCGATTTAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATg < 1:2864170/140‑1 (MQ=255) ataCCGATAGAAACAACGTAACACAAACACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATg < 1:5446177/140‑1 (MQ=255) taTTTAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGt < 1:3017986/139‑1 (MQ=255) gATTGAAACAAAGTAAAACAAACACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGt < 2:6755857/140‑1 (MQ=255) aTTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTTTTGTTTTTTATGTAATTACTAC‑AAATTTT‑AAAAATAAGGGAAAAACAT‑ACCATTTAAGTCCAACATATTTTTTGGTAATTTTTTGTAggga > 2:6628009/1‑138 (MQ=255) aTTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTTTTTTTTTTTTTTTAATTAATAC‑AAAATTT‑AAAAATACAGGCAAAAAAT‑ACCATTTTCTTACAAAAAATTTTGTGGTAAATTTATGTTGGtt > 1:7532574/1‑139 (MQ=255) aTTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGGTTTTTTGTTGTTTTTTATTTAATTAATAA‑AAATATG‑AAAAAGACGGGAAAAACAT‑AGAATTTAAGTGCGAAAAATTTTATGGTTATTTTATGTAAGTa > 2:7711019/1‑140 (MQ=255) aaaaaaACTAAAACAAAAACGCCTGGGAAACCGGGCGATTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAAt < 1:6763571/140‑1 (MQ=255) aGTAAAACAAAAACGCCTGGGAAACCGGGCGTGTTTTTTTTTTTTTTTTTGTAATTACTAC‑AAATTTG‑AAAAAAAAGGGCAAAACAA‑CCCCATTACATGCAAAATATTTTTTTGTAATTTTATGTTGGTTAAAATTG‑ttt > 2:2506238/1‑138 (MQ=255) aaacaaacACGCCTGGGAAACCGGGCGTTTTTTTGTACTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAACAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTG‑TATTTgg < 1:5091249/140‑1 (MQ=255) aaaaaaACACGCCTGGTAAACCGGTCGTTTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTG‑TATTTgg < 1:4432889/140‑1 (MQ=255) aaaCAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTG‑TATTTgg < 1:953980/140‑1 (MQ=255) aaaCAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTG‑TATTTgg < 1:4292684/140‑1 (MQ=255) aaaCAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTG‑TATTTgg < 1:6458312/140‑1 (MQ=255) aaaCAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTG‑TATTTgg < 1:2418401/140‑1 (MQ=255) aaaCAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTG‑TATTTgg < 2:2877029/140‑1 (MQ=255) aaaCAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTG‑TATTTgg < 1:1232772/140‑1 (MQ=255) aacaaacaCGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTG‑TATTTGGc < 1:1061493/140‑1 (MQ=255) aaCAAAAACGCCTGGGAAACCGGGCGTTTTTTTTTTGTTTTTTATGTAATTAATAC‑AAATTTG‑AAAAATAAGGGAAAAACAA‑CCCATTTACTTCAAAAATATTTGAAGGTAATTTTATGTAGGTAAAAATTG‑TATTTggg > 2:1399777/1‑139 (MQ=255) aaCAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTGTTTTTTTTTTAAATAATAC‑AAATATT‑AAAAATACCGGTCAAACATACCCATTT‑TTTACAAAAAATGTGTTGGTAATTTTATGTTGGTAAAATTTT‑TAttttgg > 2:7064183/1‑137 (MQ=255) aaCAAAAAAGCCTGGGAAACCGGGCGTGTGTTTTGTCTTTTTTATTTTTTTAATAA‑AAAATTGTAAAAAAACGGACAAAAC‑T‑AGCAGTTAGTTACAAAATATTTGATTTTAATTTTTTGTAGGTTAGATTTT‑TATTTgtc > 2:1089973/1‑138 (MQ=255) cAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTG‑TATTTGGCCg < 1:3796960/140‑1 (MQ=255) aacaCGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTG‑TATTTGGCCGtt < 1:588313/137‑1 (MQ=255) aaaaCGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTG‑TATTTGGCCGtt < 1:7299403/140‑1 (MQ=255) aaaCGCCTGGGAAACCGGGCGTGTTTTTTGTGTTTTTTATTTAATTACTAC‑AAAATTT‑AAAAATAACGGAAAAACAA‑CCCAATTTCTTCCAAAACATTTGGTGGTAATTTTTTTTAGGGAAAATTTG‑TATTTGGTCGtta > 2:198775/1‑139 (MQ=255) aaaCGCCTGGGAAACCGGGCGTGTTTTTGTTGGTTTTTATTTAATTATAAC‑AAAATTG‑AAAAATACGGGAAAAAAAT‑CACATTTAAATACAAAAAAATTGGCGTTAAATTTATTTACTTAAAATTTGATATTTTGCGGtc > 2:6029328/1‑139 (MQ=255) aCGCCTGGGAAACCGGGCGTGTTTTTGTTCTTTTTTTTGTAATTACTAA‑AAAATTG‑AAAAATAAGGGAAAAAAAT‑CCCATTTACTTCCAAAATATTTGATTGTAATTTTATGTATGTAAAATTTT‑TATTTTGCCGTTGag > 2:1389331/1‑140 (MQ=255) gCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTG‑TATTTGGCCGTTCagag < 2:2051071/140‑1 (MQ=255) gCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTG‑TATTTGGCCGTTCagag < 1:6361377/140‑1 (MQ=255) gCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTG‑TATTTGGCCGTTCagag < 1:2675818/140‑1 (MQ=255) gCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTG‑TATTTGGCCGTTCagag < 1:1667114/140‑1 (MQ=255) ggAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTG‑TATTTGGCCGTTCAGAGGAGGt < 1:418837/140‑1 (MQ=255) ccGGGCGTTTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTG‑TATTTGGCCGTTCAGAGGAGGTGaaaa < 1:2829568/140‑1 (MQ=255) cGTTTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTG‑TATTTGGCCGTTCAGAGGAGGTGAAAAGCggg < 1:6866507/140‑1 (MQ=255) cGTTTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTG‑TATTTGGCCGTTCAGAGGAGGTGAAAAGCggg < 2:6608217/140‑1 (MQ=255) ttGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTG‑TATTTGGCCGTTCAGAGGAGGTGAAAAGCGGGCAGGCCt < 2:493539/140‑1 (MQ=255) tGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTG‑TATTTGGCCGTTCAGAGGAGGTGAAAAGCGGGCAGGCCTg < 2:7750002/140‑1 (MQ=255) tattttttATTTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTG‑TATTTGGCCGTTCAGAGGAGGTGAAAAGCGGGCAGGCCTGAat < 2:5852033/138‑1 (MQ=255) ttttttATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTG‑TATTTGGCCGTTCAGAGGAGGTGAAAAGCGGGCAGGCCTGAatat > 2:3092313/1‑140 (MQ=255) ttttATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTG‑TATTTGGCCGTTCAGAGGAGGTGAAAAGCGGGCAGGCCTGTATAttt > 2:2291933/1‑140 (MQ=255) aTGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTG‑TATTTGGCCGTTCAGAGGAGGTGAAAAGCGGGCAGGCCTGAATATTTTtat < 1:1912869/140‑1 (MQ=255) gTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTG‑TATTTGGCCGTTCAGAGGAGGTGAAAAGCGGGCAGGCCTGAATATTTTTATaa < 2:6946943/140‑1 (MQ=255) aaTTACTAC‑AAATTTG‑AAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATAGTTGTTGGTAATTTTATGTAGGTAAAATTTG‑TATTTGGGCGTTCAGAGGAGGTGAAAAGCGGGCAGGCCTGAATATTTTTATAACt > 2:4759253/1‑140 (MQ=255) aTTACTAC‑AAATTTG‑AAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTG‑TATTTGGCCGTTCAGAGGAGGTGAAAAGCGGGCAGGCCTGAATATTTTTATAACtt > 1:3705258/1‑140 (MQ=255) ttACTAC‑AAATTTG‑AAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTG‑TATTTGGCCGTTCAGAGGAGGTGAAAAGCGGGCAGGCCTGAATATTTTTATAACttt > 1:1449588/1‑140 (MQ=255) ttACTAC‑AAATTTG‑AAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTG‑TATTTGGCCGTTCAGAGGAGGTGAAAAGCGGGCAGGCCTGAATATTTTTATAACttt > 1:2485413/1‑140 (MQ=255) actac‑AAATTTG‑AAAAATACGGGAAAAACAT‑CCCATTAACTTCCAAAATATATGATGGTAATTTTATGTAGTTAAAATTAG‑TATTTGGCCGTTCAGAGGATGTGAAAATCGGGCAGGCCTGAATCTATTTATAACtgttt > 2:1840936/1‑140 (MQ=255) ac‑AAATTTG‑AAAAATACTGGAAAAACAT‑CACATTTACTTACAAAATATTTGATGGTAATTTTATTTAGGTAAAATTTG‑TATTTGGACTTTCATAGGAGGTGAAAAGCTGGAAGGCCTGAATATTTTTATATCTTTTTAgg < 2:6266084/140‑1 (MQ=255) ac‑AAATTTG‑AAAAATACGGGAAAAACAT‑ACCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTG‑TATTTGGCCGTTCAGAGGAGGTGAAAAGCGGGCAGGCCTGAATATTTTTATAACTTTTTAgg < 2:5311121/140‑1 (MQ=255) c‑AAATTTG‑AAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTG‑TATTTGGCCGTTCAGAGGAGGTGAAAAGCGGGCAGGCCTGAATATTTTTATAACTTTTTAggg > 2:254132/1‑140 (MQ=255) c‑AAATTTG‑AAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTG‑TATTTGGCCGTTCAGAGGAGGTGAAAAGCGGGCAGGCCTGAATATTTTTATAACTTTTTAggg > 2:6319520/1‑140 (MQ=255) aaaTTTG‑AAAAATACGTGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTG‑TATTTGGCCGTTCAGAGGAGGTGAAAAGCGGGCAGGCCTGAATATTTTTATAACTTTTTAgggg < 2:5083829/140‑1 (MQ=255) aaaTTTG‑AAAAATACGGGAAAAACAT‑CCCATTTTCTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTG‑TATTTGGCCGTTCAGAGGAGGTGAAAAGCGGGCAGGCCTGAATATTTTTATAACTTTTTAgggg < 2:1176603/140‑1 (MQ=255) aTTTG‑AAAAATACGGGAAAAACAC‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTG‑TATTTGGCCTTTCAGAGGAGGTGAAAAGCGGGCAGGGCTGTTTA‑ATTTATCATTTTTTAGGGGGaa > 1:3374151/1‑140 (MQ=255) | GATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAAACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATTACTAC‑AAATTTG‑AAAAATACGGGAAAAACAT‑CCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTG‑TATTTGGCCGTTCAGAGGAGGTGAAAAGCGGGCAGGCCTGAATATTTTTATAACTTTTTAGGGGGAATT > NZ_CP034943/2991125‑2991400 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |