| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 316,300 | G→C | 8.9% | L40L (CTG→CTC) | opuAA → | glycine/proline betaine ABC transporter ATP‑binding protein OpuAA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 316,300 | 0 | G | C | 8.9% | 596.4 / 6.7 | 278 | L40L (CTG→CTC) | opuAA | glycine/proline betaine ABC transporter ATP‑binding protein OpuAA |
| Reads supporting (aligned to +/- strand): ref base G (129/102); new base C (2/27); total (131/147) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.92e-07 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 278 total aligned reads displayed.
TTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACG‑GAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATCAACTTTAGTACGGCTGTTAAACCGGCTTATTGAACCGAC > NZ_CP034943/316162‑316437 | tgcaGGAAAAATATGAGTGTATATGATAAACCAATTAACATAAAAGTCGAGAAAGTATATAAAATTTTTGGGAAACAAACAAAGAAAGAAGTTCAAATGCTTGCCAACG‑TAAAGACAAAAAAATAGATCCTGAAAGCGAc < 2:274066/137‑1 (MQ=255) ggAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACG‑GAAAGACAAAAAAAGAGATCCTGAAAGCGAcc > 1:3843118/1‑140 (MQ=255) aGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAACGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCCACG‑GAAAGACAAAAAAAGAGATCCTGAAAGCGACCgg > 2:3764534/1‑140 (MQ=255) aGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACG‑GACAGACAAAAAAAGAGATCCTGAAAGCGACCgg > 2:1205733/1‑140 (MQ=255) aGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACG‑GAAAGACACAAAAAGAGATCCTGAAAGCGACCgg > 2:2642513/1‑140 (MQ=255) aGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACG‑GAAAGACAAAAAAAGAGATCCTGACAGCGACCgg > 2:841538/1‑140 (MQ=255) aGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACG‑GAAAGACAAAAAAAGAGATCCTGAAAGCGACCgg > 1:1534652/1‑140 (MQ=255) aGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACG‑GAAAGACAAAAAAAGAGATCCTGAAAGCGACCgg > 1:3501424/1‑140 (MQ=255) aGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACG‑GAAAGACAAAAAAAGAGATCCTGAAAGCGACCgg > 2:623520/1‑140 (MQ=255) aGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACG‑GAAAGACAAAAAAAGAGATCCTGAAAGCGACCgg > 2:1859235/1‑140 (MQ=255) aGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACG‑GAAAGACAAAAAAAGAGATCCTGAAAGCGACCgg > 1:1279763/1‑140 (MQ=255) aGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACG‑GAAAGACAAAAAAAGAGATCCTGAAAGCGACCgg > 1:1255869/1‑140 (MQ=255) aGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCGAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACG‑GAAAGACAAAAAAAGAGATCCTGAAAGCGACCgg > 2:1969097/1‑140 (MQ=255) aGGGAAAATATGAGTGTAGATGACAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACACACAAAGAAAGCAGTTCAAATGCTTGCCAACG‑GAAAGACAAAAAAAGAGATCCTGAAAGCGACCgg > 2:993894/1‑140 (MQ=255) gAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAACCAGTTCAAATGATTGCCAACG‑GAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATc < 2:758759/140‑1 (MQ=255) aaaTATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACG‑GAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCaa > 2:1032312/1‑140 (MQ=255) atGAGTGTCGATTACAAACCAATTAAGATAAATGTCGACAAAGTATCTAAAATTTTTGGTAAAAAAAAAAATAAAGCAGTTCAATTGCTTGCCAACG‑GAAACACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGt < 1:3664910/140‑1 (MQ=255) tgtgtgtATATGAGAAACAAATTAATATAAAAGTCGAGAAATTAACTAAAATTTTTGGGAAACAAACAAATAAAGCAGTTAAAATGCTTGCCAACG‑GAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGtt < 2:3821628/137‑1 (MQ=255) gtgtAGTTGATAAACAAATTAACATAAAAGTCCATAAAGTATCTAAAATTTTTGGCAAAAAAAAAAACAAAGCAGTTCAAATGCTTGCCAACG‑GAAACACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTggg < 2:1426755/140‑1 (MQ=255) tgtAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACG‑GAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTgggg > 1:1426755/1‑140 (MQ=255) tgtAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACG‑GAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTgggg > 2:444410/1‑140 (MQ=255) agaAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACG‑GAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCaa > 2:2206316/1‑140 (MQ=255) aaaCCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACG‑GAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCg > 1:3804957/1‑124 (MQ=255) aaaCCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACG‑GAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCg < 2:3804957/124‑1 (MQ=255) aaaCCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACG‑GAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGc > 2:1640235/1‑140 (MQ=255) aaaCCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACG‑GAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGc > 2:1122823/1‑140 (MQ=255) aaaCCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACG‑GAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGc > 1:562495/1‑140 (MQ=255) aaaCCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACG‑GAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGGTGGGGTAAATCAAGc > 1:248314/1‑140 (MQ=255) aaaCCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGACAACG‑GAAAGACAATAAAATACATCCTCAAAGCGACCTCATCAAGCGTAGGGGAAAATCAAGc > 2:2097279/1‑140 (MQ=255) aaaCAATTTAATAAAAAAGCCGAGAAAGTATATAAAATTTTTGGCAAACAAAAAAAGAAAGCCGTAAAAAGGGTTGCCAACG‑CAAAGACAAAAAAAGAGAGCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGc < 1:3733780/140‑1 (MQ=255) aCCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACG‑GAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCACGCAg > 2:713773/1‑140 (MQ=255) aCCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACG‑GAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAg > 2:1943841/1‑140 (MQ=255) aTTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACG‑GAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGAttt > 1:98575/1‑140 (MQ=255) aTTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACG‑GAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGAttt > 1:1002268/1‑140 (MQ=255) ttAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACG‑GAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGAtttt > 1:2086034/1‑140 (MQ=255) ttAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACG‑GAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGAtgtt > 2:2776846/1‑140 (MQ=255) tAATATAAACGTCTACAAAGTATCTAAAATTTTTGGCAAACAAAAAAAGAAAGCAGTTCAAATGCTTGCCAACG‑GAAAGACAAAAAAAGAGATCCTGAACGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTg < 2:1097728/140‑1 (MQ=255) tAATATAAAAGTCGAGAAAGTATCTAAAATTTGTGCGAAAAAAACAAAGACAGCATTACAACTGCTTGCCACCG‑GAACCAAAAAAAAAGAGCCCCTCCACGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTg < 1:768079/140‑1 (MQ=255) acaTAAACGTCGAGAAAGTATCTAAATTTTTTGGCAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCACCG‑CAACGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGAt < 2:1739213/138‑1 (MQ=255) aGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACG‑GAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGAt < 2:1260693/140‑1 (MQ=255) gATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACG‑GAAAGACAAAAAAAGAGATCCTGAAAGCGACAGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATg > 2:3147140/1‑140 (MQ=255) gATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACG‑GAAAGACAAAAAAAGAGATACTGAAAGCGACCGGATCAACCGTTGGGGTAAATAAAGCAGATTTTGATg > 2:2008737/1‑140 (MQ=255) aaaaGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACG‑GAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAATAAGATTTTGATGtat > 2:3261576/1‑140 (MQ=255) aaaGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACG‑GAAAGACACAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGtata > 1:2326671/1‑140 (MQ=255) aaaGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACG‑GAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGtata > 1:389024/1‑140 (MQ=255) aaaGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACG‑GAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGtata > 1:1323403/1‑140 (MQ=255) aGTCGATAAATTATCTAAAATTTTTGGTAAAAAAACAAAGAACGCAGTTCAAATGGTTGCCAACG‑GAAACAAAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATatg < 2:3519152/140‑1 (MQ=255) tagaAATTTTCTAAAATTTTTGGGAAACAAACAAATAAAGCAGTTCAAATGATTGCCAACG‑GAAACAAAAAAAAAGAGATCCGTAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATgg < 2:2562149/139‑1 (MQ=255) gagaAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACG‑GAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATgg > 1:85012/1‑140 (MQ=255) agaAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAATTGCTTGCCAACG‑GAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGt < 2:2240825/140‑1 (MQ=255) agaAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACG‑GAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGt > 2:2856371/1‑140 (MQ=255) agaAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACG‑GAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGt > 2:3338178/1‑140 (MQ=255) agaAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACG‑GAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGt > 2:1314147/1‑140 (MQ=255) aTCTAAAATTTTGGGACAAAAAACAAATAACGCAGTTCAAATGGTTGCCACCG‑GAAAGAAAAAAAAATATATCCTTAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGatat < 2:523394/140‑1 (MQ=255) atAAAATTTTTGGCAAACAAACAAATAAAGAAGTTCAAATGCTTGCAAACG‑GAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATAttt < 2:3495339/139‑1 (MQ=255) aaatTTTTTGGCAAAAAAACAACTAAAGCAGTAAAACGGGTTGCCAACG‑CAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGt < 2:488646/140‑1 (MQ=255) tttttGGTAAACAAAAAAACAAACCCTTACAAA‑GCGTTCCAAAGCCAAACAAAAAAAAACACAGCGTCAACGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGCTGAGATATTTGtcatc < 1:2156803/140‑1 (MQ=255) tttttGGCAAACAAACAAATAAAGCAGATCAAATGCTTGCCAACG‑GAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGtcatc < 2:3579698/140‑1 (MQ=255) ttttGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACG‑GAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGtcatca > 2:2083806/1‑140 (MQ=255) tttgtcaaaaaaacAAACAACCCCTTTAAAAGGCTTGCCACCG‑CAAACAAAAAAAAAGCGACCCGAAACGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTcatcat < 1:1032312/134‑1 (MQ=255) tttGGCAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACG‑CAACCAAAAAAAAAGAGCTCCTGAACGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTcatcat < 2:2441528/140‑1 (MQ=255) tttGGCAAAAAAACAAAGAAAGCAGTTAAAATGCTTGCAAACG‑CAAAGACAAAAAAAGAGATCCTCAACGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTcatcat < 2:3424484/140‑1 (MQ=255) tGGGAAACAAACAAAGAAAGCAGTTCAACTGCTTGCCAACG‑CAAAGACAAAAAAAGAGATCCTGAACGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATgg < 2:2799637/140‑1 (MQ=255) tGGCAAACAAACAAAGAACCAAGTCCAATTGGTTCCCAACG‑TAAAGACAAAAAAACATATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATgg < 1:1411315/140‑1 (MQ=255) tGGCAAAAAAACAAACAAACCCGTAAAATTGCTTCCCACCG‑CAAACACAAAAAAAGACATCCTCAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATgg < 1:1615524/140‑1 (MQ=255) tGGCAAAAAAAAAAAGAAAGCAGTTCAAAGGCTTCCCAACG‑CAAACACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATgg < 1:3610533/140‑1 (MQ=255) tGGAAAACAAACAAATAACGCCGTAAAAATTGTTGCCAACG‑TAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGAGATTTGTCATCATgg < 1:1075895/140‑1 (MQ=255) ggggACACACACAAAGAAAGCAGTTCACATGCTTGCCAACG‑GAAACCCAAAAAAAGATATCCTTAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATgg < 2:1336416/139‑1 (MQ=255) gtaaacaaacAAAGAAAGCCGTTCAAATGCTTGCCAACG‑CAAAGACAAAAAAAGCGATCCTTAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGt < 2:540364/138‑1 (MQ=255) taaaaaaaaaaAGAAAGCATTTAAAAGGTTTGCCAACG‑CAAACACAAAAAAAGAGCCCCTCAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTc < 1:1186179/139‑1 (MQ=255) aaaataaagCAGTTAAAAGGCTTGCCAAGG‑GAACGACAAAAAAATAGCACTTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAggg < 2:971082/139‑1 (MQ=255) aGTTCAATTGCTTGCCAAGG‑GAAACACAAAAAAAGAGATCCTTAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAAt < 2:2326071/140‑1 (MQ=255) gTTCAAATGCTTGCCAACG‑GAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATc > 1:3059365/1‑140 (MQ=255) gTTCAAATGCTTGCCAACG‑GAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATc > 1:922614/1‑140 (MQ=255) gTTCAAATGCTTGCCAACG‑GAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATc < 2:1488046/140‑1 (MQ=255) gTTAAAATGGTTGCCAACG‑TAAACAAAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATc < 1:2787768/140‑1 (MQ=255) cttCAAATGCTTGCCAACG‑GAAACACAAAAAAACAGATCCTCAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATc < 1:301407/139‑1 (MQ=255) aaaTGCTTGCCAACG‑GAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATCAACt > 2:804694/1‑140 (MQ=255) tGCCAACG‑GAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATCAACTTTAGTAc > 1:2913542/1‑140 (MQ=255) tGCCAACG‑GAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATCAACTTTAGTAc > 1:2342632/1‑140 (MQ=255) tGCCAACG‑GAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATCAACTTTAGTAc > 1:2384810/1‑140 (MQ=255) tGCCAACG‑GAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATCAACTTTAGTAc < 1:2657800/140‑1 (MQ=255) tGCCAACG‑GAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATCAACTTTAGTAc > 1:3265015/1‑140 (MQ=255) tGCCAACG‑CAAACAAAAAAAAAGACATCCTTAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATCAACTTTAGTAc < 1:2427116/140‑1 (MQ=255) gcaaaCG‑CAAACACAAAAAAAGAGATCCTTAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATCAACTTTAGTACg < 1:3343877/137‑1 (MQ=255) gCCAACG‑TACAGACAAAAAAAGACATCCTGAACGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATCAACTTTAGTACg < 1:1893954/140‑1 (MQ=255) cG‑GAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATCAACTTTAGTACGGCTGt > 1:2758743/1‑140 (MQ=255) aaaGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATCAACTTTAGTACGGCTGTTaa > 2:2902284/1‑140 (MQ=255) aaGAAAAAAAAAGAGCTCCTTAACGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATCAACTTTAGTACGGCTGTTaaa < 2:1440466/140‑1 (MQ=255) aGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATCAACTTTAGTACGGCTGTTAAAc > 2:1242474/1‑140 (MQ=255) aCAAAAAACGAGATCCTGAACGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATCAACTTTAGTACGGCTGTTAAACCg < 1:3568302/140‑1 (MQ=255) aCAAAAAAAGAGATCCGAAACGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATCAACTTTAGTACGGCTGTTAAACCg < 2:1299559/140‑1 (MQ=255) aaaaaaaGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATCAACTTTAGTACGGCTGTTAAACCGGc < 2:302437/140‑1 (MQ=255) aaaaaaaGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATCAACTTTAGTACGGCTGTTAAACCGGc < 2:248010/140‑1 (MQ=255) aaaaaaaGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATCAACTTTAGTACGGCTGTTAAACCGGc < 2:2342632/140‑1 (MQ=255) gaTCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATCAACTTTAGTACGGCTGTTAAACCGGCTTATTGAAc > 1:1862562/1‑140 (MQ=255) gaTCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATCAACTTTAGTACGGCTGTTAAACCGGCTTATTGAAc > 1:2707118/1‑140 (MQ=255) ccTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATCAACTTTAGTACGGCTGTTAAACCGGCTTATTGAACCGa < 1:2054179/140‑1 (MQ=255) cTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATCAACTTTAGTACGGCTGTTAAACCGGCTTATTGAACCGAc < 2:2820142/140‑1 (MQ=255) cTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATCAACTTTAGTACGGCTGTTAAACCGGCTTATTGAACCGAc < 2:1319695/140‑1 (MQ=255) | TTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGCTTGCCAACG‑GAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATCAACTTTAGTACGGCTGTTAAACCGGCTTATTGAACCGAC > NZ_CP034943/316162‑316437 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |