| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 1,514,854 | T→G | 12.0% | intergenic (+58/+1) | EO946_RS07915 → / ← EO946_RS07920 | YlaH‑like family protein/YlaI family protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 1,514,854 | 0 | T | G | 12.0% | 780.2 / 25.9 | 334 | intergenic (+58/+1) | EO946_RS07915/EO946_RS07920 | YlaH‑like family protein/YlaI family protein |
| Reads supporting (aligned to +/- strand): ref base T (83/197); new base G (51/3); total (134/200) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.92e-20 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 337 total aligned reads displayed.
TTGATCGTCGCTGCGCTGATTTTAATCATTTACAAAATTCGGCTGTATCAGTCGAAAAAGGGACAGTCTGCAAAATCATAAAAAGACTCAGCTGAGAAGCTGAGTCTTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTT‑GACTTTTTCTTTTTTTTGCTGTCCCGGGTG‑AAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGCACATATATGTATGGATTGGGCGGTTTCGAAG > NZ_CP034943/1514716‑1514992 | ttGATCGTCGCTGCGCTGATTTTAATCATTTACAAAATTCGGCTGTATCAGTCGAAAAAGGGACAGTCTGCAAAATCATAAAAAGACTCAGCTGAGAAGCTGAGTCTTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCtt > 2:5303858/1‑140 (MQ=255) tGATCGTCGCTGCGCTGATTTTAATCATTTACAAAATTCGGCTGTATCAGTCGAAAAAGGGACAGTCTGCAAAATCATAAAAAGACTCAGCTGAGAAGCTGAGTCTTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCttg > 2:6431095/1‑139 (MQ=255) gATCGTCGCTGCGCTGATTTTAATCATTTACAAAATTCGGCTGTATCAGTCGAAAAAGGGACAGTCTGCAAAATCATAAAAAGACTCAGCTGAGAAGCTGAGTCTTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCGTTa > 2:6789826/1‑140 (MQ=255) gATCGTCGCTGCGCTGATTTTAATCATTTACAAAATTCGGCTGTATCAGTCGAAAAAGGGACAGTCTGCAAAATCATAAAAAGACTCAGCTGAGAAGCTGAGTCTTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCGTTa > 1:2783954/1‑140 (MQ=255) gATCGTCGCTGCGCTGATTTTAATCATTTACAAAATTCGGCTGTATCAGTCGAAAAAGGGACAGTCTGCAAAATCATAAAAAGACTCAGCTGAGAAGCTGAGTCTTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCGTTa > 1:2468402/1‑140 (MQ=255) cgctgcgctgATTTTAATCATTTACAAAATTCGGCTGTATCAGTCGAAAAAGGGACAGTCTGCAAAATCATAAAAAGACTCAGCTGAGAAGCTGAGTCTTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTAtttttt > 1:4765943/1‑140 (MQ=255) cgctgcgctgATTTTAATCATTTACAAAATTCGGCTGTATCAGTCGAAAAAGGGACAGTCTGCAAAATCATAAAAAGACTCAGCTGAGAAGCTGAGTCTTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTAtttttt > 2:1133139/1‑140 (MQ=255) cgctgcgctgATTTTAATCATTTACAAAATTCGGCTGTATCAGTCGAAAAAGGGACAGTCTGCAAAATCATAAAAAGACTCAGCTGAGAAGCTGAGTCTTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTGTAtttttt > 2:6376457/1‑140 (MQ=255) cgctgATTTTAATCATTTACAAAATTCGGCTGTATCAGTCGAAAAAGGGACAGTCTGCAAAATCATAAAAAGACTCAGCTGAGAAGCTGAGTCTTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTT‑GActt < 2:5641963/140‑1 (MQ=255) aTTTTAATCATTTACAAAATTCGGCTGTATCAGTCGAAAAAGGGACAGTCTGCAAAATCATAAAAAGACTCAGCTGAGAAGCTGAGGCTTGTTTTGTGGTTTGTCTGGTAAAGCGGCCGCGTGATTTTTT‑GAcgttttgt > 1:3682811/1‑138 (MQ=255) aTTTTAATCATTTACAAAATTCGGCTGTATCAGTCGAAAAAGGGACAGTCGGCAAAATCATAAAAAGACTCAGCTGAGAAGCTGAGTCTTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCGGTATTGTTT‑GAgtttttgt > 2:5394578/1‑138 (MQ=255) cATTTACAAAATTCGGCTGTATCAGTCGAAAAAGGGACAGTCTGCAAAATCATAAAAAGACTCAGCTGAGAAGCTGAGTCTTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTT‑GACTTTTTCTTTTTTTTg < 2:1052284/140‑1 (MQ=255) ttACAAAATTCGGCTGTATCAGTCGAAAAAGGGACAGTCTGCAAAATCATAAAAAGACTCAGCTGAGAAGCTGAGTCTTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTT‑GACTTTTTC‑TTTTTTTGCTGt < 2:2097227/140‑1 (MQ=255) cAAAATTCGGCTGTATCAGTCGAAAAAGGGACAGTCTGCAAAATCATAAAAAGACTCAGCTGCGAAGCTGAGTCTTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTT‑GACTTTTTCTTTTTTTTGCTGTcc < 1:992183/140‑1 (MQ=255) cAAAATTCGGCTGTATCAGTCGAAAAAGGGACAGTCTGCAAAATCATAAAAAGACTCAGCTGAGAAGCTGAGTCTTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTT‑GACTTTTTCTTTTTTTTGCTGTcc < 2:2008134/140‑1 (MQ=255) cAAAATTCGGCTGTATCAGTCGAAAAAGGGACAGTCTGCAAAATCATAAAAAGACTCAGCTGAGAAGCTGAGTCTTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTT‑GACTTTTTCTTTTTTTTGCTGTcc < 2:320259/140‑1 (MQ=255) cAAAATTCGGCTGTATCAGTCGAAAAAGGGACAGTCTGCAAAAGCATAAAAAGACTCAGCTGAGAAGCTGAGTCTTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTT‑GACTTTTTCTTTTTTTTGCTGTcc < 1:6995919/140‑1 (MQ=255) ttCGGCTGTATCAGTCGAAAAAGGGACAGTCTGCAAAATCATAAAAAGACTCAGCTGAGAAGCTGAGTCTTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTT‑GACTTTTTCTTTTTTTTGCTGTCCCGGGt < 2:7645172/140‑1 (MQ=255) gtCGGCTGGATCAGTCGAAAAAGGGACAGTCTGCAAAATCATAAAAAGACTCAGCTGAGAAGCTGAGTCTTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTT‑GACTTTTTCTTTTTTTTGCTGTCCCGGGt < 2:5868439/139‑1 (MQ=255) ttATCAGTCGAAAAAGGGACAGTCTGCAAAATGATAAAAAGACTCAGCTGCGAAGCTGAGTCTTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTT‑GACTTTTTCTTTTTTTTGCTGTCCCGGGTG‑AAAAGt < 1:5883197/139‑1 (MQ=255) gTATCAGTCGAAAAAGGGACAGTCTGCAAAATCATAAAAAGACTCAGCTGAGAAGCTGAGTCTTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTT‑GACTTTTTCTTTTTTTTGCTGTCCCGGGTG‑AAAAGt < 1:7478939/140‑1 (MQ=255) tCAGTCGAAAAAGGGACAGTCTGCAAAATCATAAAAAGACTCAGCTGAGAAGCTGAGTCTTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTT‑GACTTTTTCTTTTTTTTGCTGTCCCGGGTG‑AAAAGTGaa < 2:6276400/140‑1 (MQ=255) tCAGTCGAAAAAGGGACAGTCTGCAAAATCATAAAAAGACTCAGCTGAGAAGCTGAGTCTTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCGTTATTTTTT‑GTCTTTTTCTTTTTTTTTGTGTGCCGGGTG‑TAAAGTGaa > 1:1225873/1‑140 (MQ=255) aaaaGGGACAGTCTGCAAAATCATAAAAAGACTCAGCTGAGAAGCTGAGTCTTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTTGGAGTTTGGTTTTTTTTGGTTGGCCCGGG‑G‑AAAATTGAATTTTACCg > 1:4105261/1‑140 (MQ=255) aaaaGGGACAGTCTGCAAAATCATAAAAAGACTCAGCTGAGAAGCTGAGTCTTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTT‑GACTTTTTCTTTTTTTTGCTGTCCCGGGTG‑AAAAGTGAATTTTCCCg > 2:1582433/1‑140 (MQ=255) aaaaGGGACAGTCTGCAAAATCATAAAAAGACTCAGCTGAGAAGCTGAGTCTTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCGTTATTTTTT‑GACTTTTTGTTTTTTTTTCTGTGCCGGGTG‑TAAATTTAATTTTACCg > 1:3032903/1‑140 (MQ=255) gACAGTCTGCAAAATCATAAAAAGACTCAGCTGAGAAGCTGAGTCTTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTT‑GACTTTTTCTTTTTTTTGCTGTCCCGGGTG‑TAAAGTGAATTTTACCGTTTTCa > 2:31356/1‑140 (MQ=255) gACAGTCTGCAAAATCATAAAAAGACTCAGCTGAGAAGCTGAGTCTTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCGTTATTTTTT‑TTCTTTTTGTTTTTTTTTGTGTCCCGGGTG‑AAAAGTGAATTTTCCCGttttaa > 1:6908228/1‑138 (MQ=255) gACAGTCTGCAAAATCATAAAAAGACTCAGCTGAGAAGCTGAGTCTTTTTTTGGGTTTTGTATGGTAAAGCGGCCGCGTTAATTTTT‑GTCTTTTTCTTTTTTTTTGTGTCCCGGGTG‑AACAGTGAATTTTCCCGTTTTCa > 1:6021005/1‑140 (MQ=255) gACAGTCTGCAAAATCAT‑AAAAGACTCAGCTGA‑AAGCTGAGTC‑TTTTTTGTGTTCTGTATGGTTAAGCGGCCGCTTTATTTTTT‑GACTTTTTCTTTTTTCTGCTGTCCCGGGTG‑AAAAGTAAATTTTCCCGTTTTCAGcc > 2:495490/1‑140 (MQ=255) aGTCTGCAAAATCATAAAAAGACTCAGCTGAGAAGCTGAGTCTTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCGTTATTTTTT‑GGCTGTTTGTTTTTTTTTGTTTCCCGGGTG‑TAAAGTGTATTTTGCCGTTTTGAGcc > 1:2343711/1‑140 (MQ=255) gTCTGCAAAATCATAAAAAGACTCAGCTGAGAAGCTGAGTCTTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCGTTTTTTTTT‑GTGTTTTTGTTTTTTTTTCTTTGCCGGGTGAAAAATTGAATTTACCGGtttaagacg > 1:1073671/1‑134 (MQ=255) gTCTGCAAAATCATAAAAAGACTCAGCTGAGAAGCTGAGTCTTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCGTTATTTTTT‑TTCTTTTTGTTTTTTTTTCTTTGCCGGGTG‑CAAAGTGTATTTTACCGTTTTCAGGCg > 1:4277263/1‑140 (MQ=255) gTCTGCAAAATCATAAAAAGACTCAGCTGAGAAGCTGAGTCTTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCGGTATTTTTT‑TACTTTTTCTTTTTTTTTCTGTCCCGGGTG‑AAAAATGAATTTTGCCGGTTTCAGcag > 1:3116109/1‑138 (MQ=255) gTCTGCAAAATCATAAAAAGACTCAGCTGAGAAGCTGAGTCTTTTTTTGTGGTTTGTATGGTAAAGCGGCCGCGGTATTTTTT‑TACTTTTTGTTTTTTTTTGTGTACCGGGTG‑AAAAGTTAAATTTACCGTTTTAAGCCg > 1:650392/1‑140 (MQ=255) gTCTGCAAAATCATAAAAAGACTCAGCTGAGAAGCTGAGTCTTTTTTTGGGTGTTGTATGGTAACGCGGCCGCTTTATTTTTT‑GTATTTTTGTTGTTTTTGCTGTACCGGGTG‑AAAAGTGGATTTTGCCGTTTTGAGCCg > 2:2785903/1‑140 (MQ=255) tGCAAAATCATAAAAAGACTCAGCTGAGAAGCTGAGTCTTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTTTTTTTT‑GACTTTTTGTTTTTTTTTGTTTCCCGGGTG‑AAAAGTTAATTTTACCGTTTTAAGCCggtg > 1:1939899/1‑137 (MQ=255) aaaTCATAAAAAGACTCAGCTGAGAAGCTGAGTCTTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTT‑GACTTTTTCTTTTTTTTGCTGTCCCGGGTG‑AAAAGTGAATTTTCCCGTTTTCAGCCGTtcttct < 2:7269638/140‑1 (MQ=255) tCATAAAAAGACTCAGCTGAGAAGCTGAGTCTTTTTTTGGGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTT‑GAGTTTTTCTTTTTTTTGGTGTCCCGGGTG‑AAAAGTGAATTTTCCCGTTTTCAGCCGTTATTCTGtt > 2:364298/1‑140 (MQ=255) cATAAAAAGACTCAGCTGAGAAGCTGAGTCTTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTT‑GACTTTTTCTTTTTTTTGCTGTCCCGGGTG‑AAAAGTGAATTTTc < 1:3348471/116‑1 (MQ=255) cATAAAAAGACTCAGCTGAGAAGCTGAGTCTTTTTTGGTGTTTTGTATGGTAAAGCGGCCGCTTGATTTTTT‑GACTTTTTCTTTTTTTTGCTGTCCCGGGTG‑AACAGTGAATGTTCCCGTTTTCAGGCGTGCTTCTGttt > 2:6099487/1‑140 (MQ=255) cATAAAAAGACTCAGCTGAGAAGCTGAGTCTTGTTTTGTGTGTTGTATGGTAAAGCGGCCGCTTTATTTTTT‑GACTTTTTCTTTTTTTTTCTTTCCCGGGTG‑AAAAGTGAATTTTCCCGTTTTCAGCCGTGGGTCTGttt > 2:2649311/1‑140 (MQ=255) tAAAAAGACTCAGCTGAGAAGCTGAGTCTTTTTTTGTGTTTTGGATGGTAAAGCGGCCGCTTTATTTTTT‑GACGTTTTCTTTTTTTTTCTGTCCCGGGTG‑AAAAGTGAATTTTCCCGTTTTCAGCCGGTCGTCTGttttt > 2:567918/1‑140 (MQ=255) aaGACTCAGCTGAGAAGCTGAGTCTTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTT‑GACTTTTTCTTTTTTTTGCTGTCCCGGGTG‑AAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTggg < 1:1930099/140‑1 (MQ=255) aaGACTCAGCTGAGAAGCTGAGTCTTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTT‑GACTTTTTCTTTTTTTTGCTGTCCCGGGTG‑AAAAGTGAATTTGCCCGTTTTCAGCCGTTCTTCTGTTTTTTggg < 2:5492789/140‑1 (MQ=255) aaGACGCCGCTGAGAAGCGGAGTCTTTTATTGTGTTGTGTAGGGTAACGCGGCCGCTTAATTTTTT‑GACTGTTTCTTTTTGTTGCTGTCCCGGGTG‑AAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTggg < 2:5215005/140‑1 (MQ=255) gCTGAGAAGCTGAGTCTTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTT‑GACTTTTTCTTTTTTTTGCTGTCCCGGGTG‑AAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCgg < 2:3667186/140‑1 (MQ=255) cgcagaAGCTGAGTCTTTTTTTGTGTTTTGTATGGTACAGCGGCCGCTTTATTTTTT‑GACTTTTTCTTTTTTTTGCTGTCCCGGGTG‑AAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGt < 2:4279118/137‑1 (MQ=255) cTGAGAAGCTGAGTCTTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTT‑GACTTTTTCTTTTTTTTGCTGTCCCGGGTG‑AAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGt < 1:6660833/140‑1 (MQ=255) aaGCTTAGTCATTTTATGTGATTTGTATGGTAAACCGGCCGCTTTATTTTTT‑GACTTTTTCTTTTTTTTGCTGTCCCGGGTG‑AAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTgg < 1:1795817/140‑1 (MQ=255) aaGCTGAGTCTTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTT‑GACTTTTTGTTTTTTTTGGTTTACCCGGTG‑AAAAGGTAATTTTGCCGTTTTCAGGCGTTCTTGTGTTTTTTGGGCAAAACGGTCGTgg > 2:242285/1‑140 (MQ=255) aGCTGAGTCTTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTT‑GACTTTTTCTTTTTTTTGCTGTCCCGGGTG‑ACAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGc < 2:1255551/140‑1 (MQ=255) aGCTGAGTCTTTTTTTGTGTATTGTATGGTAAAGCGGCCGCTTTATTTTTT‑GACTTTTTCTTTTTTTTGCTGTCCCGGGTG‑AAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGc < 2:3971410/140‑1 (MQ=255) cTGAGTCTTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTT‑TTCTTTTTGTTTTTTTTTGTGTCCCCGGTG‑AAAAGTTAATTTTACCGTTTTAATCCGTTCTTGTGTTTTTTTGGCGATACGGTCGTGGCAt > 1:1092125/1‑140 (MQ=255) cTGAGTCTTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCGTTATTTTTT‑GACTTTTTGTTTTTTTTTCTTTACCCGGTG‑TAAAATGAATTTTAACGTTTTGAGCCGGTGTTCTGTTTTTTTGGGAATACGGTGGTGGCAt > 1:5106038/1‑140 (MQ=255) gAGTCTTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTT‑GAGTTTTTCTTTTTTTTGCTGTCCCGGGTG‑AAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTc > 2:2729451/1‑140 (MQ=255) gAGTCTTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTT‑GACTTTTTCTTTTTTTTGCTGTCCCGGGTG‑AAAAGTGAATTTTc > 2:1464639/1‑91 (MQ=255) gAGTCTTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTT‑GACTTTTTCTTTTTTTTGCTGTCCCGGGTG‑AAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTc > 2:7379781/1‑140 (MQ=255) tCTTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTTTTTTTT‑TTCTTTTTTTTTTTTTTTGTTTACCGGGTG‑AAAAGTTAATTTTACCGTTTTAAGACGTTATTGTTTTTTTTTTGCAATACGGTCGTTGGATTACTg > 1:7122442/1‑140 (MQ=255) tCTTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTT‑GACTTTTTGTTTTTTTTTCTTTCCCGGGTT‑AAAAGTGAATTTTACCGTTTTAAGGCGTTCTTATTTTTTTTTGTCAATAAGGTAGTGGCATTGCTg > 2:1376312/1‑140 (MQ=255) tCTTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTGTATTTTTT‑TTGTTTTTTTTTTTTTTTGTTTCCCGGGTG‑AAAAATGAATTTTTCCGTTTTGAGACGTTCTTGTGTTTTTTTGTGAAACAGCTCGTGGCATTACTg > 1:5839301/1‑140 (MQ=255) cTTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTT‑GACTTTTTCTTTTTTTTGCTGTCCCGGGTG‑AAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTgg < 1:4184080/140‑1 (MQ=255) cTTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTT‑GACTTTTTCTTTTTTTTGCTGTCCCGGGTG‑AAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTgg < 2:6138829/140‑1 (MQ=255) tttttttGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTT‑GACTTTTTCTTTTTTTTGCTGTCCCGGGTG‑AAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGc < 1:1038095/140‑1 (MQ=255) tttgtttgTGTTTTGTATGGTAACGCGGCCGCTTTATTTTGT‑GACTTTTTCTTTTTTTTGCTGGCCCGGGTG‑AAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGc < 2:5360303/140‑1 (MQ=255) ttttttGTGTTTTGTATTGTAAAGCGGCCGCTTTATTTTTT‑GACTTTTTCTTTTTTTTGCTGTCCCGGGTG‑AAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGca < 1:4643488/140‑1 (MQ=255) ttttttGTGTTTTGTATGGTAATGCGGCCGCTTTATTTTTT‑GACTTTTTCTTTTTTTTGCTGTCCCGGGTG‑AAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGca < 2:3395594/140‑1 (MQ=255) ttttttGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTT‑GACTTTTTCTTTTTTTTGCTGTCCCGGGTG‑AAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGca < 1:5081807/140‑1 (MQ=255) ttttttGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTT‑GACTTTTTCTTTTTTTTGCTGTCCCGGGTG‑AAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGca < 1:2550627/140‑1 (MQ=255) ttttttGTGTTTTGTATGCTAAAGCGGCCGCTTTATTTTGT‑GACTTTTTCTGTTTTTTGCTGTCCCGGGTG‑CAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGca < 2:3268613/140‑1 (MQ=255) tttttGTGTTTTGTATGGTACAGCGGCCGCTTTATTTTTT‑GACTTTTTCTTTTTTTTGCTGTCCCGGGTG‑AAAAGTGAATGTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGcac < 2:6648901/140‑1 (MQ=255) tttttGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTT‑GACTTTTTCTTTTTTTTGCTGTCCCGGGTG‑AAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGcac < 2:2889593/140‑1 (MQ=255) ttttGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTT‑GACTTTTTCTTTTTTTTTCTGTCCCGGGTG‑AAAAGTGAATTTTAACGTTTTAAGCCGTTCTTCTGTTTTTTTGGCAATACGGTCGTGGCAATCCTGGcaca > 2:2191041/1‑140 (MQ=255) ttttGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTT‑GACTTTTTCTTTTTTTTGCTGTCCCGGGTG‑AAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGcaca < 1:6017257/140‑1 (MQ=255) ttttGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTT‑GACTTTTTCTTTTTTTTGCTGTCCCGGGTG‑AAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGcaca < 2:4765943/140‑1 (MQ=255) ttttGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTT‑GACTTTTTCTTTTTTTTGCTGTCCCGGGTG‑AAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGcaca < 1:5303858/140‑1 (MQ=255) ttttGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTT‑GACTTTTTCTTTTTTTTGCTGTCCCGGGTG‑AAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGcaca < 2:6609046/140‑1 (MQ=255) ttttGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTT‑GACTTTTTCTTTTTTTTGCTGTCCCGGGTG‑AAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGcaca < 1:5731971/140‑1 (MQ=255) ttttGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTT‑GACTTTTTCTTTTTTTTGCTGTCCCGGGTG‑AAAAGTGAATTGTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGcaca < 1:7139040/140‑1 (MQ=255) tttGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTT‑GACTTTTTCTTTTTTTTGCTGTCCCGGGTG‑AAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGCACat < 2:420859/140‑1 (MQ=255) ttGTGTTTTGTATGGTAAAGCGGCCGCTTTTTTTTTT‑GACTTTTTCTTTTTTTTGCTGTCCCGGGTG‑AAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGCACata < 1:7581962/140‑1 (MQ=255) ttGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTT‑GACTTTTTCTTTTTTTTGCTGTCCCGGGTG‑AAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGCACata < 1:1554147/140‑1 (MQ=255) ttGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTT‑GACTTTTTCTTTTTTTTGCTGTCCCGGGTG‑AAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGCACata < 1:1450634/140‑1 (MQ=255) ttGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTT‑GACTTTTTCTTTTTTTTGCTGTCCCGGGTG‑AAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGCACata < 1:2118742/140‑1 (MQ=255) ttGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTT‑GACTTTTTCTTTTTTTTGCTGTCCCGGGTG‑AAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGCACata < 2:4614436/140‑1 (MQ=255) ttGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTT‑GACTTTTTCTTTTTTTTGCTGTCCCGGGTG‑AAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGCACata < 2:3702537/140‑1 (MQ=255) ttGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTT‑GACTTTTTCTTTTTTTTGCTGTCCCGGGTG‑AAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGCACata < 1:3388526/140‑1 (MQ=255) ttGTGTTTTGTATGGTAAAGCGGCCGCGTTATTTTTT‑GACTTTTTCTTTTTTTTGCTGTCCCGGGTG‑AAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGCACata < 1:6450465/140‑1 (MQ=255) tgtgTTTTGTATGGTAAAGCGGCCGCTTTATTTTTT‑GACTTTTTCTTTTTTTTGCTGTCCCGGGTG‑AAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGCACatat < 1:5439124/140‑1 (MQ=255) ttttGTATGGTACAGCGGCCGCTTTATTTTTT‑GACTTTTTCTTTTTTTTGCTGTCCCGGGTG‑AAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGCACATAtatgt < 2:4105261/140‑1 (MQ=255) ttttGTATGGTAAAGCGGCCGCTTTATTTTTT‑GACTTTTTCTTTTTTTTGCTGTCCCGGGTG‑AAAAGTTAATTTTACCGTTTTCAGCCGTTCTTGTGTTTTTTGGGCAATACGGTCGTTGCATTCCTGGCACATAaatgt > 2:7156684/1‑140 (MQ=255) ttttGTATGGTAAAGCGGCCGCTTTATTTTTT‑GACTTTTTCTTTTTTTTGCTGTCCCGGGTG‑AAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGCACATAtatgt < 1:849536/140‑1 (MQ=255) tttGTATGGTAAAGCGGCCGCTTTATTTTTT‑GACTTTTTCTTTTTTTTGCTGTCCCGGGTG‑AAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGCACATAtatgta < 1:6834569/140‑1 (MQ=255) tagggTAACGCGGCCGCTTTATTTTTT‑GCCTTTTTCTTTTTTTTGCTGTCCCGGGTG‑AAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGCACATATATGTATGGa < 1:7192255/137‑1 (MQ=255) tATGGTAAAGCGGCCGCTTTATTTTTT‑GACTTTTTCTTTTTTTTGCTGTCCCGGGTG‑AAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGCACATATATGTATGGa < 1:3555220/140‑1 (MQ=255) aGCGGCCGCGTTATTTTTT‑GACTTTTTCTTTTTTTTTCTGTACCGGGTG‑AAAAGTGAATTTTACCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATACGGTCGTGGCATTCCTGGCACATATATGTATGGATTGGGCgg > 2:2797539/1‑140 (MQ=255) aGCGGCCGCGTTATTTTTT‑GACTTTTTCTTTTTTTTTCTGTACCCGGTG‑AAAAGTGAATTTTACCCGTTTGATCCGTTCTTCTGTTTTTTTGGCAAAACGGTCGTTGCATTACTGGCACATAAATGTATTGATTTGGCgg > 2:2478008/1‑140 (MQ=255) cGGCCGCTTTATTTTTT‑TACTTTTTGGTTTTTTTGCTTTCCCGGGTG‑AAAAGTGAATTTTCCCGTTTTCAGGCGTTCTTCTTTTTTTTGTGCAATCCGGTCGTGGCATTCCTGGCACATATATGTAAGGATTGGGCGGtt > 2:2997652/1‑140 (MQ=255) cGGCCGCGTTATTTTTT‑TACTTTTT‑GTTTTTTTGCTGTCCCGGGTG‑AAAAATTAATTTTGACGTTTTGAGCCGGTGTTGTGTTTTTTTGGGAATACGGTGGTGGCATTACAGGCCCATAAATGTATTGATTTGGGGGttt > 1:4397033/1‑140 (MQ=255) ccGCTTGCTTTTTT‑GACTTTTTGTTTTTTTTGCTGTCCCGGGTG‑AAAAGTGACTTTTCCCGTTTTCAGCCGTTCTTGTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTTGCACATATATTTCTGGGTTGGGCGGTGTct > 2:6989320/1‑139 (MQ=255) | TTGATCGTCGCTGCGCTGATTTTAATCATTTACAAAATTCGGCTGTATCAGTCGAAAAAGGGACAGTCTGCAAAATCATAAAAAGACTCAGCTGAGAAGCTGAGTCTTTTTTTGTGTTTTGTATGGTAAAGCGGCCGCTTTATTTTTT‑GACTTTTTCTTTTTTTTGCTGTCCCGGGTG‑AAAAGTGAATTTTCCCGTTTTCAGCCGTTCTTCTGTTTTTTGGGCAATCCGGTCGTGGCATTCCTGGCACATATATGTATGGATTGGGCGGTTTCGAAG > NZ_CP034943/1514716‑1514992 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |