| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 3,446,970 | G→T | 17.7% | Q206K (CAA→AAA) | degU ← | two‑component system response regulator DegU |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 3,446,970 | 0 | G | T | 17.7% | 1046.1 / 92.0 | 537 | Q206K (CAA→AAA) | degU | two‑component system response regulator DegU |
| Reads supporting (aligned to +/- strand): ref base G (155/272); new base T (108/2); total (263/274) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.50e-37 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 544 total aligned reads displayed.
CTATTGTAAGGGAAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTT‑ACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCG > NZ_CP034943/3446831‑3447108 | ctATTGTAAGGGAAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGAACACAACGGCTTGCGTCCGGTCGTTT‑ACATTCATTTTTTg < 2:2173645/140‑1 (MQ=255) tATTGAACGGGAAACGGCAGCCTAAAATAAGACCTGCCCAGTAAAAGGCAAGTCTCTAATTATACTATCACAGATCTACCCAGCCATTTTTAATGGCCACCACAACCGCTTGCGTCCCGTCCTTT‑ACATTCATTTTATGc > 2:2121663/1‑140 (MQ=255) aTTGTAAGGGAAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTT‑ACATTCATTTTTTGCa < 1:952359/140‑1 (MQ=255) aTTGTAAGGGAAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTT‑ACATTCATTTTTTGCa < 1:886106/140‑1 (MQ=255) aTTGTAAGGGAAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTT‑ACATTCATTTTTTGCa < 1:3258661/140‑1 (MQ=255) aTTGTAAGGGAAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTT‑ACATTCATTTTTTGCa < 1:2879344/140‑1 (MQ=255) aTTGTAAGGGAAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTATACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTT‑ACATTCATTTTTTGCa < 2:1365083/140‑1 (MQ=255) aGGGAAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCACGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTGG‑ACCTTCATTTTTTGCAAAatat > 1:203593/1‑140 (MQ=255) aGGGAAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTT‑ACATTCATTTTTTTCAAAatat > 2:2363281/1‑140 (MQ=255) aGGGAAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTT‑ACATTCATTTTTTGCAAAatat < 1:785133/140‑1 (MQ=255) aGGGAAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTGT‑AAATTCATTTTTTTCAAAatat > 2:5965806/1‑140 (MQ=255) aGGGAAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTATGATTATACTATCTCATTTCTCCCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTT‑ACATTAATTTTTTGCAAAatat > 2:5359607/1‑140 (MQ=255) aGGGAAACGGCAGCCTAAAAAAAGACCTGCCCAGAAAAATGCAAGTCTCTTATTATAATATCTCATTTCTACCCAGCCATTTATAAAGGAGACCACAACGGCTTGCGTCCGCTCGTGT‑AAAATAAATTTTTTAaaaaaaa > 1:6013046/1‑137 (MQ=255) gtgAAACGTCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTATACCCAGAAATTTTTAATGGCGACCACAACGGCTTTCGTAATGTCTTTT‑ACATTCATTTTTTTAAAAataat > 2:6257145/3‑138 (MQ=255) aaCGGCAGCCTACAAAAAGACCTGCCCCGTAAAAGGCAAGTCTCTTATGCGACGATCTCGTGTCGACCCCGCCATTTTGACTGGCGCCCCCCACGGCGTGCGGCCGGTCGGGT‑ACTTTCATTGTTTGCCAAATTTTGcgc > 2:3420606/1‑138 (MQ=255) aaCGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTT‑ACAATAATTTTTTTGAAAATATTtctc > 1:7183518/1‑140 (MQ=255) aCGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTT‑ACATTCATTTTTTGCAAAATATTGCTca < 1:2467697/140‑1 (MQ=255) ggCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTT‑ACATTCATTTTTTTCAAAATAATTCTcaca > 2:1027191/1‑140 (MQ=255) ggCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTT‑ACATTCATTTTTTTCAAAAAATTGCTcaca > 2:176505/1‑140 (MQ=255) ggCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTT‑ACATTCATTTTTTGCAAAATATTGCTcaca < 1:7533567/140‑1 (MQ=255) ggCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTT‑ACATTCATTTTTTGCAAAATATTGCTcaca < 1:505997/140‑1 (MQ=255) gCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCAGTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTT‑ACATTCATTTTTTGCAAAATATTGCGCACATGGt > 2:5495704/1‑140 (MQ=255) ccTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTGATTATAGTATCTCATTTCTACGCAGCCATTTTTCATGGCGACCACACCGGCTTGCGTCCGGTCGTGT‑ACATTCATTTTTTTCGAAATATTGATGACAggggt > 1:6355848/1‑138 (MQ=255) ccTAAAAAAAGAACTGCCCAGTAAAAGGCAATTCTCTTATTGTACTATCTAATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCGTGCGTCCGGTCGTGT‑AGATAGCTGTTTTGCAGAATATTGCTCACATGGtt > 2:3061287/1‑140 (MQ=255) aaacaGACCTGACCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTT‑ACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCa < 1:4259563/140‑1 (MQ=255) gACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTT‑ACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGtt > 2:7305171/1‑140 (MQ=255) tGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTT‑ACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTtct < 2:5846417/140‑1 (MQ=255) tGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTT‑ACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTtct < 1:3853020/140‑1 (MQ=255) tGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTT‑ACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTtct < 2:692193/140‑1 (MQ=255) tGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTT‑ACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTtct < 1:3526074/140‑1 (MQ=255) tGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTT‑ACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTtct < 2:2993465/140‑1 (MQ=255) tGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTT‑ACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTtct < 1:1019589/140‑1 (MQ=255) cccAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTGT‑ACATTCATTTTTTTCAAAATATTGATCACATGGTTTTTCACCGTTTtctaa > 2:4861323/1‑138 (MQ=255) aaGGCAAGTCTCTTATTATACTATCTCATGTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTT‑ACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATaaa < 1:5772268/140‑1 (MQ=255) aGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTT‑ACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAAc < 2:7093669/140‑1 (MQ=255) aGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTT‑ACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAAc < 2:6567427/140‑1 (MQ=255) aGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTT‑ACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGa < 1:7286109/140‑1 (MQ=255) aGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGAGACCACAACGGCTTGCGTCCGGTCGTTT‑ACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGa < 1:1588756/140‑1 (MQ=255) gTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTT‑ACATTAATTTTTTTAAAAATATTTCTCAAAAGGTTTTTAACGGTTTTATCAATGATAAACAATGAt > 1:1365402/1‑140 (MQ=255) gTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTT‑ACAATAAATTTTTTCAAAAAATTTCTCACAAGGTTTTTAAACGATTTATAACAGATAAAAAATTAt > 2:3911707/1‑140 (MQ=255) gTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTGT‑TCAATAATTTTTTTCAAAAAATTGGTCACATGGTTTTTGACGGTTTTATCACTGATAAAAAAAGAt > 1:5328249/1‑140 (MQ=255) ctTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACACCGGCTTGCGTCCGGTCGTTT‑ACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCAc < 1:3144921/140‑1 (MQ=255) ttattaTACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTT‑ACATTCATTTTTTTCAAAAAATTGCTCACAAGGTTTTTCACGGTTTTTTGAATGATAAACAAAGATTCAcc > 1:6613267/1‑140 (MQ=255) taCTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTT‑AGATTCATTTTTTTCAAAAAATTTCTCACAATGTTTTTAACCGTTTTATCACTTATAAAAAAATATTAACCaaaaac > 1:1209262/1‑136 (MQ=255) taCTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTT‑AAATTCATTTTTTTGAAAAAATTTCTCACAAGGTTTTTAACGGTTTTGTCACAGATAAAAAATGATTCACCaaaaaa > 1:682320/1‑136 (MQ=255) tttctcATTTCTACCCAGCCATTTTTAATGGCGAACACAACGGCTTGCTTCCGTTCGTTT‑AAATTCATTTTTTGCAAATTATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACcgcg < 1:3654472/138‑1 (MQ=255) aTCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTTCGTCCGGTCGTTT‑ACATTAATTTTTTGCAAAAAATTTCTAAAATGGTTTTTCAAGGTTTTCTCACTGATAAAAAATCATTAACCAATaaaccgg > 1:6709804/1‑134 (MQ=255) aTCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAAAATAAATTTTTTGAAAAAAATT‑ATCACATTGTTTTTCAAGGTTTTGTAACTGATAAAAAAAAATTCACAAAAAcacccg > 1:1993516/1‑135 (MQ=255) aTCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTT‑ACATTCATTTTTTTCAAAATATTTCTCAAATGGTTTTTAAAGGTTTTATCACTGATAAACAATGATTCACCAATAACCCgg > 2:4759844/1‑140 (MQ=255) aTCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTT‑ACATTAATTTTTTTCAAAAAATTTCTCAAAAGGTTTTTAAAGGTTTTGTCACAGTTAAAAAAATATTCAACAAAACCCCgg > 1:4167873/1‑140 (MQ=255) aTCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTT‑ACATTAAATTTTTTCAAAATAATGCTCAAAAGGGTGTTAAAGGTTTTCTCACTTATAAACAAATAGTAACCAATACCGCgg > 2:5664897/1‑140 (MQ=255) tcATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTT‑ACATTCATTTTTTTCAAAATATTGCTAACAATGTTTTTCACGGTTTTATAACAGATAAAAAATGATTAACCAAAACCGCGGTTg > 2:2438571/1‑140 (MQ=255) tcATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTT‑ACATTCATTTTTTTCAAAATAATTCTCACATTGTTTTTAACGGTTTTATAAATGATAAACAATTATTAAACAATAACGCGGTTg > 2:5302242/1‑140 (MQ=255) tcATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTT‑ACATTCATTTTTTGCAAAATATTGCTCACAAGGTTTTTCACCGTTTTATCACTGATAAACAATGATTCAACAAAAACGCCGTTg > 2:2808658/1‑140 (MQ=255) tttCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTT‑TCAATCATTTTTTTCAAAATAATGCTCCCAATGTTTTTCACGGTTTTCTAACTGATAAACAATGAATAACCAAAACCGCGGTTGCtt > 1:4936187/1‑140 (MQ=255) tttCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTT‑ACATTCAATTTTTGCAAAATAGTGCTCAAATGGTTTTTAACGGTTTTCTCACTGATAAACAATGTTTGACCAATAACGCGGGTgggt > 2:2933153/1‑137 (MQ=255) tttCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTT‑ACATTAATTTTTTTCAAAATAATGCTAACATGGTTTTTAACGGTTTTATAAATGATAAAAAATTATTAACCAATAACGAGGTTGCtt > 2:4213411/1‑140 (MQ=255) tttCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTT‑ACATTAAATTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTATAAATGATAAAAAATTATTAAACAATAACGCGGGTTCtt > 2:2754213/1‑140 (MQ=255) aCCCAGCCATTTTTAATGGCGACCACAACGGCGTGCGTCCGGTCGTTT‑ACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTcc < 2:7673968/140‑1 (MQ=255) ccAGCGATTTTTAATTGCGACCACAACGGCTTGCGTCCGTTCGTTT‑ACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGt < 1:2261439/140‑1 (MQ=255) aGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTT‑ACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTAGCAATGATAAAAAATTTTTAGACAAAAACGCGGTTGCTTTTTGCGTCt > 2:5109234/1‑140 (MQ=255) ccATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTT‑TCATTCATTTTTTTCAAAATATTGCTCCCATTGTTTTTCACCGTTTTGTCACTGTTAAACAATGATTAACCAAAACCGCGGTTGCGTTTTGCGTCTGc > 1:3335125/1‑140 (MQ=255) cATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTT‑ACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCa < 2:2009733/140‑1 (MQ=255) cATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTT‑ACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCa < 1:5426734/140‑1 (MQ=255) cATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTT‑ACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGGTGCTTTTTCCGTCTGCa < 1:371571/140‑1 (MQ=255) aTTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTT‑ACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCaa < 1:5910947/140‑1 (MQ=255) aTTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTT‑ACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGGTGCTTTTTCCGTCTGCaa < 2:6370087/140‑1 (MQ=255) ttttAATGGCGACCACACCGGCTTGCGTCCGGTCGTTT‑ACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGc < 2:5737830/140‑1 (MQ=255) aTGGCGACCACAACGGCTTGCGTCCGGTCGTTT‑ACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGGTGCTTTTTCCGTCTGCAAGCATCTg < 2:3285034/140‑1 (MQ=255) gCGACCACAACGGCTTGCGTCCGGTCGTTT‑ACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTgcag < 1:2717309/140‑1 (MQ=255) gCGACCACAACGGCTTGCGTCCGGTCGTTT‑ACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTgcag < 2:1181385/140‑1 (MQ=255) gCGACCACAACGGCTTGCGTCCGGTCGTTT‑ACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTgcag < 1:3951456/140‑1 (MQ=255) gCGACCACAACGGCTTGCGTCCGGTCGTTT‑ACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTgcag < 1:2134265/140‑1 (MQ=255) gCGACCACAACGGCTTGCGTCCGGTCGTTT‑ACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTgcag < 1:7052052/140‑1 (MQ=255) cGACCACAACGGCTTGCGTCCGGTCGTTT‑ACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGGTGCCTTTTCCGTCTGCAAGCATCTgcagc < 1:2790449/140‑1 (MQ=255) cGACCACAACGGCTTGCGTCCGGTAGTTT‑ACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTGTCCGTCTGCAAGCATCTgcagc < 1:1403421/140‑1 (MQ=255) gACCACAACGGCTTGCGTCCGGTCGTTT‑ACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTgcagca < 1:5210530/140‑1 (MQ=255) gACCACAACGGCTTGCGTCCGGTCGTGT‑ACATTCCTTTTTTGCAAACTATTGCTCACATGGTTTTTCACGGTTTTCTGAGTGATAAAAAATTATTCACCAATACCGCGGTTGCGTTTTCCGTCTGCCAGCATCTggagca > 2:4593033/1‑140 (MQ=255) cTTGCGTCCGGTCGTTT‑ACATTCATTTTTTGCAAAATATTTCTCACATGGTTTTTCACGGTTTTATAACTGATAAACAATGATTCACCAATACCGCGGTTGGTTTTTACGTCTGCAAGCAACTGCAGCACTTCACAttac > 2:849263/1‑138 (MQ=255) tGCGTCCGGTCGTTT‑ACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCccg < 1:1920657/140‑1 (MQ=255) tGCGTCCGGTCGTTT‑ACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCccg < 1:6218228/140‑1 (MQ=255) gCGTCCGGTCGTTT‑ACATTCATTTTTTGCAACATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAAGACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACAGTCccgc < 1:1782789/140‑1 (MQ=255) cGTCCGGTCGTTT‑ACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCccgcc < 1:6500502/140‑1 (MQ=255) gTCCGGTCGTTT‑ACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCccgccg < 1:4436548/140‑1 (MQ=255) gTCCGGTCGTTT‑ACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCccgccg < 1:7447390/140‑1 (MQ=255) ccGGTAGTTT‑ACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAg < 2:6114150/140‑1 (MQ=255) ggTCGTTT‑ACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGGTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACCTTCCCGCCGAGtt < 2:1100837/140‑1 (MQ=255) gTCGTTT‑ACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTa < 1:5521946/140‑1 (MQ=255) gTCGTTT‑ACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAAAAATTATTAACCAATAACGCGGTTGCTTTTTACGTCTGCAAGCATCTGCACCACTTCACAATACCCCCGAGTTa > 2:369475/1‑140 (MQ=255) cGTTT‑ACATTCATTTTTTGCAACATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTGCCGTCTGCAAGCATCTGCAGCACTTGCCATTCCCGCCGAGTTaaa < 2:1518241/140‑1 (MQ=255) cGTTT‑ACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTaaa < 1:7627166/140‑1 (MQ=255) cGTTT‑AAATTAATTTTTTGAAAAATATTGCTCAGATTGTGTTTAACTGTTTTATCACTGATAAACAATGATTAACCAAGTCCGCGGTTTCTTTTTCGGTCTGAAAGCATCAGCAGCACTTCACATTCCCGCCGAGTTaaa < 1:1269729/140‑1 (MQ=255) ttt‑ACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAat < 2:4374550/140‑1 (MQ=255) ttt‑ACATTAAATTTTTGCAAAATATTTCTCAAATGGTTTTTCACGGTTTTCAAACTTCTAAACAATGATTAACCAATAACCCGGTTGCGTTTTACGTCTGCCAGCAACTGCCCCACATCACAATCACGCCCAGGTAAAat > 2:737711/1‑140 (MQ=255) att‑ACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAat < 2:1923012/139‑1 (MQ=255) aatcattTTTTGCACACTATTGATCACCTGGTTTTTCACGGTTTTCTCACTGATACACAATGCTTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGtc < 1:5611730/138‑2 (MQ=255) tcattTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAAt > 2:7569953/1‑140 (MQ=255) tGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCg < 1:6917473/140‑1 (MQ=255) tGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCg > 2:6759565/1‑140 (MQ=255) tGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCg < 1:4707573/140‑1 (MQ=255) | CTATTGTAAGGGAAACGGCAGCCTAAAAAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTT‑ACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCG > NZ_CP034943/3446831‑3447108 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |