| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 3,447,038 | T→G | 11.6% | N183T (AAC→ACC) | degU ← | two‑component system response regulator DegU |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 3,447,038 | 0 | T | G | 11.6% | 1075.3 / 39.2 | 551 | N183T (AAC→ACC) | degU | two‑component system response regulator DegU |
| Reads supporting (aligned to +/- strand): ref base T (205/257); new base G (18/70); total (223/328) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.77e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 559 total aligned reads displayed.
TCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGAT‑AAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTGAGGGTGTGCAGAAACTCCGCTTGTTGCAAGGCGGCGGAATTCGT > NZ_CP034943/3446899‑3447176 | tcATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTTCAAAATATTGCTAACAATGTTTTTCACGGTTTTATAACAGAT‑AAAAAATGATTAACCAAAACCGCGGTTg > 2:2438571/1‑140 (MQ=255) tcATTTCTACACAGACATTTTTAATGTCTAAAACAACTTATTGCGTCCTTTATTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTTACGTTTTTCTCACTGAT‑AAAAAATTATTCACCAATACCGCGGTTg < 2:586551/140‑1 (MQ=255) tttCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTTCAATCATTTTTTTCAAAATATTGCTCACAATGTTTTTAACGGTTTTATCAATTAT‑AAAAAAAGATTAAACAAAAACCCGGTTGCtt > 1:5971516/1‑140 (MQ=255) aCCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTAACATGGTTTTTCACGGTTTTATCACTGAT‑AAAAAATGATTCACCAATACCGCGGTTGCtttttac > 2:5336603/1‑138 (MQ=255) ccAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGAT‑AAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGt < 1:7165819/140‑1 (MQ=255) aGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTAATTTTTTTCCAAAAATTTCTCACATGGTTTTTCACGGGTTTGTAACGTAT‑AAACAAAGAATAACCAAAACCGCGGTTGCGTTTTGCGTCt > 1:228580/1‑140 (MQ=255) aGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTGTTCAATCATTTTTTGCAAAATATTTCTCACATGGTTGTTCACGGGTTTCTCACTTAT‑AAACAAAGATTGACCCAAACCCCGGGTGGGTTTTACGTCt > 1:5175104/1‑140 (MQ=255) aGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTGTACCTTCATTTTTTTCAAAATCTTTCTCCAATGGTTTTTCAACGTTTTATGACTGTTAAAAAAATGA‑TGACCAATACCCCGGTTGGGTTTTGCGGCt > 1:3867182/1‑140 (MQ=255) aGCCATGTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTGTACATTCATTTTTTTGAAAATATTTCTCGCCTGGTTTTTGACCGTTTTCTGACTGGT‑AAAAAAAGATTCACCAATAACGCGGTTGGTTTTTGCGTCt > 1:2017537/1‑140 (MQ=255) gCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGAT‑AAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTg < 2:2235421/140‑1 (MQ=255) ccATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTGTACAATAATTTTTTGCAAAATATTGCTCACAAGGTTTTTCACGGTTTTGTAACTGAT‑AAACAAAGATTGACCCATAACCCGGTTGCTTTTTACggcggc > 1:5737830/1‑135 (MQ=255) cATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGAT‑AAACAATGATTCCCCAATACCGCGGTTGCTTTTTCCGTCTGCa < 1:709007/140‑1 (MQ=255) cATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGAT‑AAACAATGATTCACCAATACCGCGGGTGCTTTTTCCGTCTGCa < 1:371571/140‑1 (MQ=255) cATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTAATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGAT‑AAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCa < 2:5209384/140‑1 (MQ=255) aTTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTGTTCACGGTTTTCTCACTGAT‑AAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCaa < 2:1929878/140‑1 (MQ=255) ttttAATGGCGACCACCACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGAT‑AAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGc < 2:204407/140‑1 (MQ=255) ttttAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGAT‑AAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGc < 1:6878001/140‑1 (MQ=255) ttttAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGAT‑AAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGc < 2:6177202/140‑1 (MQ=255) aTGGCGACCACAACGGCTTGCGTCCGGTCGTGTACCTTAAATTTTTTCAAAATATTTCTGACATGGTTTTTGACGGGTTTCTGACTGGTAAAACAAT‑CTTCACCAATACCCCGGTTGCTTTTTACGTGTGCAAGCAGCTg > 1:3476895/1‑140 (MQ=255) aTGGCGACCACAACGGCTTGCGTCCGGTCGTGTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTGACGGTTTTTTCACTGAT‑AAACAATGATTCACCAAAACCCCCGTTGCTTTTTCCGTCTGCAAGCATCTg > 1:4264266/1‑140 (MQ=255) tGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTAACCGTTTTCTCACTGAT‑AAACAATGAGTCACCAAAACCGCGGTTGCGTTTTCCCTATGCAAGccgatgc > 2:4813441/1‑134 (MQ=255) tGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTAATTTTTTTCAAAATATTGCTCACATGGTTTTTCACGGTTTTATCACTGAT‑AAACAATGATTAACAAAAACCGCGGTTGCTTTTTCAGTCTGCAAGCATCTgc > 2:843349/1‑140 (MQ=255) gCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGAT‑AAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTgcag < 1:2717309/140‑1 (MQ=255) gCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGAT‑AAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTgcag < 1:2134265/140‑1 (MQ=255) cGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGAT‑AAACAATGATTCACCACTACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTgcagc > 2:1098951/1‑140 (MQ=255) cGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGAT‑AAACAATGATTCACCAATACCGCGGGTGCCTTTTCCGTCTGCAAGCATCTgcagc < 1:2790449/140‑1 (MQ=255) gACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGAT‑AAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTgcagca < 1:7498730/140‑1 (MQ=255) gACCACAACGGCTTGCGTCCGGTCGTGTACATTCCTTTTTTGCAAACTATTGCTCACATGGTTTTTCACGGTTTTCTGAGTGAT‑AAAAAATTATTCACCAATACCGCGGTTGCGTTTTCCGTCTGCCAGCATCTggagca > 2:4593033/1‑140 (MQ=255) tGCGTCCGGTCGTTTACATTCCTGGTTGGCACAATATTGCTCACAGGGTTTTTCACGGTTTTCTCCCTGAT‑AACCAATGATTCCCCCCTACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACAGGCccg < 2:2142955/140‑1 (MQ=255) tGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGAT‑AAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCccg < 2:3347053/140‑1 (MQ=255) tGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGAT‑AAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCccg < 1:6218228/140‑1 (MQ=255) cGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGAT‑AAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCccgcc < 1:1244107/140‑1 (MQ=255) cGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGAT‑AAACAATGATTCACCAATACCGCGGGTGCTTTTTCCGTATGCAAGCATCTGCAGCACTTCACAGTCccgcc < 1:918601/140‑1 (MQ=255) gTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGAT‑AAAAAATTATTAACCAATAACGCGGTTGCTTTTTACGTCTGCAAGCATCTGCACCACTTCACAATACCCCCGAGTTa > 2:369475/1‑140 (MQ=255) cGTTTACATTCATTTTTTGCAACATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGAT‑AAACAATGATTCACCAATACCGCGGTTGCTTTTGCCGTCTGCAAGCATCTGCAGCACTTGCCATTCCCGCCGAGTTaaa < 2:1518241/140‑1 (MQ=255) cGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGAT‑AAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTaaa < 2:6053441/140‑1 (MQ=255) cGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGAT‑AAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTaaa < 1:4394998/140‑1 (MQ=255) cGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGAT‑AAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTaaa < 1:7350380/140‑1 (MQ=255) cGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGAT‑AAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTaaa < 1:7288869/140‑1 (MQ=255) cGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGAT‑AAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACAGTCCCGCCGAGTTaaa < 2:2619004/140‑1 (MQ=255) tttACATTCATTTTTTGCAAAAAATTGCTCACAAGGTTTTTAAACGTTTTCTCACAGAT‑AAACAATGATTCACCAATAACGCGGGTGCAATTTACCTCTGCAAGCATATCCAGCACTTCAAATTCCCGCCGAGTTAAAat > 2:7660925/1‑140 (MQ=255) attcattTTTTGCAACATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGAT‑AAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTa < 2:5147382/140‑1 (MQ=255) aatcattTTTTGCACACTATTGATCACCTGGTTTTTCACGGTTTTCTCACTGAT‑ACACAATGCTTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGtc < 1:5611730/138‑2 (MQ=255) tcattTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGAT‑AAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAAt > 2:7569953/1‑140 (MQ=255) attTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGAT‑AAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATgg > 2:933949/1‑140 (MQ=255) tGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGAT‑AAACACAGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCAGCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCg > 2:2985216/1‑140 (MQ=255) tGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGAT‑AAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCg > 2:6759565/1‑140 (MQ=255) tGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGAT‑AAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCg < 1:458019/140‑1 (MQ=255) tGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGAT‑AAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCg < 1:4707573/140‑1 (MQ=255) tGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGAT‑AAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCg < 1:1382226/140‑1 (MQ=255) tGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGAT‑AAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCg < 1:6917473/140‑1 (MQ=255) tGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGAT‑AAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCg > 2:119869/1‑140 (MQ=255) tGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGAT‑AAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCg < 1:2994938/140‑1 (MQ=255) tGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGAT‑AAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCg < 1:5336603/140‑1 (MQ=255) tGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGAT‑AAACAATGATTCACCAATACCGCGGTTGCTTTGTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCg < 1:3981922/140‑1 (MQ=255) cAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGAT‑AAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCACGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGa > 2:2872148/1‑140 (MQ=255) aaTATTGCTCACATGGTTTTTCACGGTTTTCTCACTGAT‑AAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGAttt < 1:1027191/140‑1 (MQ=255) gCTCACCTGGTTTTTCACGGTTTTCTCACTGAT‑AAACAATGATTCACCAATACCGCGGGTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGAt < 2:441286/140‑1 (MQ=255) gCTCACATGGTTTTTCACGGTTTTCTCACTGAT‑AAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGAt < 1:6445653/140‑1 (MQ=255) gCTCACATGGTTTTTCACGGTTTTCTCACTGAT‑AAACAATGATTCACCAATACCGCGGGTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGAt < 1:99082/140‑1 (MQ=255) gCTCACATGGTTTTTCACGGTTTTCTCACTGAT‑AAACAATGATTCACCAATACCGCGGGTGCTTTGTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGAt < 2:3978772/140‑1 (MQ=255) gcaccgggTTTTGCACGGTGTTCTCACTGAT‑AAACTATGATTCCCCAATTCCGGGGTTGCTTTTTCCGTCGGAATGCATCTGCAGCACTTCACATTCCCGGCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAg < 2:6378008/134‑1 (MQ=255) aTGGTTTTTCACGGTTTTCTCACTGAT‑AAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACtt < 1:1666117/86‑1 (MQ=255) aTGGTTTTTCACGGTTTTCTCACTGAT‑AAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACtt < 1:586812/86‑1 (MQ=255) aTGGTTTTTCACGGTTTTCTCACTGAT‑AAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCt < 2:688515/140‑1 (MQ=255) aTGGTTTTTCACGGTTTTCTCACTGAT‑AAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCt > 1:1534355/1‑140 (MQ=255) aTGGTTTTTCACGGTTTTCTCACTGAT‑AAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCt > 2:5682926/1‑140 (MQ=255) aTGGTTTTTCACGGTTTTCTCACTGAT‑AAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCt < 1:1810277/140‑1 (MQ=255) aTGGTTTTTCACGGTTTTCTCACTGAT‑AAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCt < 1:3628978/140‑1 (MQ=255) aTGGTTTTTCACGGTTTTCTCACTGAT‑AAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATAGGTAATGGTCTGCGGATTTCAGGATAGACCt > 1:3189892/1‑140 (MQ=255) aTGGTTTTTCACGGTTTTCTCACTGAT‑AAACAATGATTCACCAATACCGCGGGTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCt < 2:710442/140‑1 (MQ=255) aTGGTTTTTCACGGTTTTCTCACTGAT‑AAACAATGATTCACCAATACCGCGGGTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCt < 2:4326592/140‑1 (MQ=255) aTGGTTTTTCACGGTTTTCTCACTGAT‑AAACAATGAGTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCt < 2:6295545/140‑1 (MQ=255) aTGGTTTGTCACGGTTTTCTCACTGAT‑AAACAATGATTCACCAATACCGCGGGTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCt < 1:6555990/140‑1 (MQ=255) aTGGTTTGTCACGGTGTTCTCACTGAT‑AAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCt < 2:3143027/140‑1 (MQ=255) ttttCACGGTTTTCTCACTGAT‑AAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGc > 2:7435835/1‑140 (MQ=255) ttttCACGGTTTTCTCACTGAT‑AAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGc < 1:5032004/140‑1 (MQ=255) aCGGTTTTCTCACTGAT‑AAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTGAgg < 2:3797663/140‑1 (MQ=255) ttttCTCACTGAT‑AAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCt < 1:4111696/126‑1 (MQ=255) ttttCTCACTGAT‑AAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCt > 2:4111696/1‑126 (MQ=255) tcACTGAT‑AAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTGAGGGTGTGCAGa < 2:5513260/140‑1 (MQ=255) cTGAT‑AAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTgcag > 2:5731485/1‑59 (MQ=255) gAT‑AAACAATGCTTCTCCAGTACCGCGGGTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTGAGGGTGTGCAGAAACTc > 2:2763173/1‑140 (MQ=255) gAT‑AAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTGAGGGTGTGCAGAAACTc > 1:493404/1‑140 (MQ=255) gAT‑AAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTGAGGGTGTGCAGAAACTc > 2:6524227/1‑140 (MQ=255) gAT‑AAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTGAGGGTGTGCAGAAACTc > 2:6982604/1‑140 (MQ=255) aaCAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTGAGGGTGTGCAGAAACTCCGCt < 1:2831961/140‑1 (MQ=255) aaCAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTGAGGGTGTGCAGAAACTCCGCt < 2:7352993/140‑1 (MQ=255) tGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAat < 2:5032582/75‑1 (MQ=255) tGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTGAGGGTGTGCAGAAACTCCGCttgttg > 2:139702/1‑140 (MQ=255) aTTCCCCAATACCGCGGCTGCTTTGTCCGTCTGCAAGCATCTGCAGCACTACACAGGCCCCCCGAGATAAAATATGTAATGGTCTGCGGATTTACGGATAGCCCTCATGCTGAGGGTGTGCAGAAACTCCGCTTGTTGcc < 1:7610510/140‑2 (MQ=255) aTTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCt > 1:6660231/1‑105 (MQ=255) aTTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTGAGGGTGTGCAGAAACTCCGCTTGTTGCa > 1:1947141/1‑140 (MQ=255) aTTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTGAGGGTGTGCAGAAACTCCGCTTGTTGCa > 1:5432104/1‑140 (MQ=255) aTTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTGAGGGTGTGCAGAAACTCCGCTTGTTGCa > 2:323348/1‑140 (MQ=255) aTTCACCAATACCCCGGTAGCTTTTTACGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCTGATTTCAGGAAAGACCTAATGCTGAGGGAGTGCAGAAAATCCGAttgttgaa > 2:3523688/1‑138 (MQ=255) tCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTGAGGGTGTGCAGAAACTCCGCTTGTTGCAAg > 1:828667/1‑140 (MQ=255) tACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTGAGGGTGTGCAGAAACTCCGCTTGTTGCAAGGcggcgg > 2:1642954/1‑140 (MQ=255) aCCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTGAGGGTGTGCAGAAACTCCGCTTGTTGCAAGGCGGCGGa > 2:2486197/1‑140 (MQ=255) ggTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTGAGGGTGTGCAGAAACTCCGCTTGTTGCAAGGCGGCGGAATTCg > 1:2383169/1‑140 (MQ=255) | TCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGAT‑AAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTGAGGGTGTGCAGAAACTCCGCTTGTTGCAAGGCGGCGGAATTCGT > NZ_CP034943/3446899‑3447176 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |