| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 3,561,985 | G→C | 15.0% | intergenic (‑631/‑167) | EO946_RS18300 ← / → EO946_RS21105 | response regulator/HAMP domain‑containing histidine kinase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 3,561,985 | 0 | G | C | 15.0% | 957.7 / 47.6 | 401 | intergenic (‑631/‑167) | EO946_RS18300/EO946_RS21105 | response regulator/HAMP domain‑containing histidine kinase |
| Reads supporting (aligned to +/- strand): ref base G (171/157); new base C (2/66); total (175/226) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.24e-16 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 402 total aligned reads displayed.
ATCAGATCAAAGCAAGACAATCAGGTTTTCGGGATCAGCACGTCGTTTATTTACAGTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGA > NZ_CP034943/3561846‑3562118 | atcatatcaAAGCAAGACAATCAGGTTTTCGGGATCAGCACGTCTTTTATTTACAGTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAg < 1:5123559/140‑1 (MQ=255) tcagatcaAAGCAAGACAATCAGGTTTTCGGGATCAGCACGTCGTTTATTTACAGTGCAAATCGCATCTATTTTAATGGCCAATTAATATGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGa < 1:522322/140‑1 (MQ=255) tcagatcaAAGCAAGACAATCAGGTTTTCGGGATCAGCACGTCGTTTATTTACAGTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGa < 2:7136932/140‑1 (MQ=255) cagatcaAAGCAAGACAATCAGGTTTTCGGGATCAGCACGTCGTTTATTTACAGTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGAc < 2:3564997/140‑1 (MQ=255) cagataaAAGCAAGAAAATCAGCTTTTCGCTATCATCACGTCGTTTATTTACAGTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATTAACCTGATTTTATAGCGCAAAAAAGAc < 2:4427629/140‑1 (MQ=255) gatcaAAGCAAGACAATCAGGTTTTCGGGATCAGCACGTCGTTTATTTACAGTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAAACTGATTTTATATCGCAAAACAGACCa > 1:739222/1‑140 (MQ=255) atcaAAGCAAGACAATCAGGTTTTCGGGATCAGCACGTCGTTTATTTACAGTGCACATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGAGTTTATAGCGCAAAACAGACCat > 2:5206056/1‑140 (MQ=255) atcaAAGCAAGACAATCAGGTTTTCGGGATCAGCACGTCGTTTATTTACAGTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCat > 2:6120216/1‑140 (MQ=255) aaGCAAGACAATCAGGTTTTCGGGATCAGCACGTCGTTTATTTACAGTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATAc < 1:5552666/140‑1 (MQ=255) aGCAAGACAATCAGGTTTTCGGGATCAGCACGTCGTTTATTTACAGTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATATCGCAAAACAGACCATATACg > 2:6925820/1‑140 (MQ=255) aGCAAGACAATCAGGTTTTCGGGATCAGCACGTCGTTTATTTACAGTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGa > 1:1251819/1‑131 (MQ=255) aGCAAGACAATCAGGTTTTCGGGATCAGCACGTCGTTTATTTACAGTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGCAAGCCCTTCAAATAAACCTGATTTTATAGAGCAAAACAGACCCTATACg > 2:4741714/1‑140 (MQ=255) cAAGACAATCAGGTTTTCGGGATCAGCACGTCGTTTATTTACAGTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAg < 1:2815565/140‑1 (MQ=255) gACAATCAGGTTTTCGGGATCAGCACGTCGTTTATTTACAGTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCtt > 2:5395279/1‑140 (MQ=255) gACAATCAGGTTTTCGGGATCAGCACGTCGTTTATTTACAGTGCAAATCGCATATATTTTAATGGCCAAGTAATAGGACAAAGCGGAAGCCCTTAAAATAAACCTGATTTTATATCGCAAAACAGAACATATACGAGCtt > 1:4304076/1‑140 (MQ=255) tCAGGTTTTCGGGATCAGCACGTCGTTTATTTACAGTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTa < 1:6359430/140‑1 (MQ=255) tCAGGTTTTCGGGATCAGCACGTCGTTTATTTACAGTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTa < 2:2571473/140‑1 (MQ=255) aGGTTTTCTGGATCAGAACGTCGTTTATTTAAAGTGCAAATCGCATCTATTTTAATGGACAATTAATAGGACAAATCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACg < 1:7232944/140‑1 (MQ=255) aGGTTTTCGGGATCAGCACGTCGTTTATTTACAGTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACg < 1:7122600/140‑1 (MQ=255) aGGTTTTCGGGATCAGCACGTCGTTTATTTACAGTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACg < 2:3903766/140‑1 (MQ=255) aGGTTTTCGGGATCAGCACGTCGTTTATTTACAGTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACg < 1:1896210/140‑1 (MQ=255) ttCGGGATCAGCACGTCGTTTATTTACAGTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCGTca > 1:6186541/1‑140 (MQ=255) cGGGATCAGCACGTCGTTTATTTACAGTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGCCCATATACGAGCTTTTTTACGCTTcaca < 1:990732/140‑1 (MQ=255) cGGGATCAGCACGTCGTTTATTTACAGTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTcaca > 2:1654631/1‑140 (MQ=255) aTCAGCACGTCGTTTATTTACAGTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCCTAGACGAGCTTTTTTACGCTTCACAAggg < 2:5520696/140‑1 (MQ=255) aCGTCGTTTATTTACAGTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACaa < 1:6888754/140‑1 (MQ=255) tcgtTTATTTACAGTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑a > 1:4839036/1‑140 (MQ=255) tatttaCAGTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTtg < 1:3324019/140‑1 (MQ=255) gTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACaa > 2:2171524/1‑140 (MQ=255) gTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACaa > 1:3809148/1‑140 (MQ=255) tGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACg > 1:670882/1‑106 (MQ=255) tGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAAt > 1:1341832/1‑140 (MQ=255) tGCAAATCGCATCTATTTTAATGGCCAATGAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAAt > 1:5493089/1‑140 (MQ=255) aTCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACATACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACtt > 2:1860114/1‑140 (MQ=255) aTCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACtt > 1:918954/1‑140 (MQ=255) aTCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACtt > 2:4606321/1‑140 (MQ=255) ggCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGcc > 2:5069714/1‑140 (MQ=255) gCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCg > 2:28473/1‑140 (MQ=255) aTAGGACACAGCGGAAGCCCTACAAATAAACCTTATTTTATAGCGCAAAACACACCATATACGAGCTTTTTTCCGCTTCACACGGGTGACAATG‑AACTTGTGGTAAAATTTACAAACTTCGTAAAAACGCCGGGGTgggg < 1:3442667/140‑1 (MQ=255) aTAGGACAAAGCGCAAGCCATTCAAATAAACCTGATTTTATAGCGCAAAACACACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTgggg < 2:792933/140‑1 (MQ=255) aTAGCACAAAGCGGAAGCCCTTAAAATAAACCTTATTTTATCGCCCAAAACACACCATATACGAGCTTTTTTACGCTTCACACGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGTAAAAACGCCGGGGTgggg < 1:6582994/140‑1 (MQ=255) aGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGaa > 1:5368923/1‑140 (MQ=255) aacgCGGACGCCCTTAAAATAACCCTGATTTTATAGCGCAAACCCCCCCATATACGCGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCa < 2:6275454/137‑1 (MQ=255) aaaGCGCAAGCCATACAAAAAAACCTTTTTTTATAGCGAAAAACAGACCATATAGTAGCTTTTTTACGCTTCAAACGGGTCAAAATT‑AACTTGGGATAAACTTTACAAACTTCGCAAAAACGCCGGGGTGGGGAATCGCa < 1:5775380/140‑1 (MQ=255) aaGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCaa > 1:4764032/1‑140 (MQ=255) aGCGGAAGCCCTTCAAATAAACCTGTTTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACACGGGTGTCAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAATTCGCCGGGGTGGGGAATGGCaac > 1:5620737/1‑139 (MQ=255) aGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGACTCGCaaa > 1:3120457/1‑140 (MQ=255) aGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCaaa > 2:6003366/1‑140 (MQ=255) aGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCaaa > 2:2461801/1‑140 (MQ=255) aGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCaaa > 1:2155783/1‑140 (MQ=255) aGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCaaa > 1:6032534/1‑140 (MQ=255) aGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTGTTTTACGCATCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCaaa > 1:705046/1‑140 (MQ=255) aGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATAGACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGATAGACGCCGGGGTGGGGAAGCGCaag > 1:3995983/1‑139 (MQ=255) gAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCg > 1:4157143/1‑140 (MQ=255) aaGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAggg < 2:4873207/72‑1 (MQ=255) accccTTAAAATAAACCTGATTTTATAGCGAAAACCAGCCAATAAACGAGGTTTTTAACGGTTCCAACGGGTGACAATC‑AACGTGTGGTACAATTTACAAACTTCGCAAAAACGCCGGGGTGGGGAATCGCAAAGCCGAt < 1:4961524/138‑1 (MQ=255) aGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGAt < 2:5589505/140‑1 (MQ=255) aGCCCTTATATTAAACGTGTTTTTATAGGGAAAAACAGACCATCTACTAGCTTTTTTACGCTACACAAGGGTGACATTT‑AACTTGTGTTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGAt < 2:7478786/140‑1 (MQ=255) cTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACt > 1:1494358/1‑140 (MQ=255) tCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACttt > 1:7469371/1‑140 (MQ=255) tCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATATTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACttt > 2:3374884/1‑140 (MQ=255) aaaaaaACCTGATTTTATCGCGAAAAACCGACCATATACGAGCTTTTTTACGCTTCACACGGGTGACAATG‑AAGTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTg < 1:2391595/140‑1 (MQ=255) aaaTAAACCTGATTTTATCCCGCAAAACAGACCATAGCCCAGCTTTTTTCCGATACACAAGGGTGACAAGG‑AACTTGTGGTAAAATTTACAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTg < 1:1654631/140‑1 (MQ=255) aaTAAACCTGATTTTATAGCGCAAAACCGACCATATACGCGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACGTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTgg < 2:680792/140‑1 (MQ=255) accctttttttATAGCGCAAAACCCACATTATCCGAGCTTTTTTACGCTTCACATGGTTCACAATC‑AACTTGTGGTACATTTTAAAAACTTCGCAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACg < 1:4423093/133‑1 (MQ=255) acccTGAGTTTCAAGCCCCAAACAGCCCATCTCCGAGCTTTTTTACGGTTCCCAAGGGTGACACGG‑ACCGTGGGGTACAATTTACAACCTACGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACg < 2:3995983/138‑1 (MQ=255) aacttttttttATAGCGCAACACACACCATATACGCGTTTTTTTACGCTTAACATGGGTGACAATG‑AATTTTTGGTACAATTTAAAAAGTTGGTAAACACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACg < 1:2358203/133‑1 (MQ=255) aaCCTTTTTTTATAGCGAAAAACACACCATATACGAGATTTTTTCCGATTCACCCGGGTGACAATT‑AAGTTGTGTTAAATTTTTAAAACTGCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACg < 1:3684443/140‑1 (MQ=255) aaCCTTTTTTTATAGCCCAAAACCCACCATATACGAGATTTTTTACGCTTCACCTGGGTGACAATG‑AACTTGTGGTACAATTTTCAACCTTCGGAAACACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACg < 1:794390/140‑1 (MQ=255) aaCCTTATTTTATCCCCCAAAACAGACAATATCCCCGATTTTTTACCCTACCCACGGGTCACATTG‑AACTTGTCTAAAAATTTTCAAAATACGTAAAAACGCCGGGGTGGGGAATCGAAAAGCCGATTACTTTTGGAACg < 1:3616967/140‑1 (MQ=255) aaCCTTATTTAATACCGCAAAACAGACCCTATACGAGCTTTTTTACGCTTCACACGGGTGACACTG‑ACCTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACg < 1:6753340/140‑1 (MQ=255) aaCCTGTTTTTATAGCGCAAACCAGCCCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAAGG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACg < 2:2036657/140‑1 (MQ=255) aaCCTGATTTTATAGCGCAAACCAGACCATATACGAGGTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACg < 2:4251940/140‑1 (MQ=255) aaCCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACACGGGTGAAAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACg < 2:1444357/140‑1 (MQ=255) aaCCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACg < 2:5782713/140‑1 (MQ=255) aaCCTGATTTTATAGCGCAAAAACTACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AAGTTGTGGTACAATTTACAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACg < 2:3427223/140‑1 (MQ=255) aCCTTATTTTATAGCCCAAACCACACCATATACCAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTCCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGc < 1:6168210/140‑1 (MQ=255) aCCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGc > 1:461517/1‑140 (MQ=255) aCCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGc > 1:2038772/1‑140 (MQ=255) aCCTGATTTTATAGCGAAAAACACACCATATACGCGATTTTTTACGCTTCCCACGGGTGACAATG‑AACTTGTGGAACAATTTACAAACTGCGCAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGc < 1:28489/140‑1 (MQ=255) ccTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCa < 2:7031184/140‑1 (MQ=255) ccTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCa < 2:3271423/140‑1 (MQ=255) ccTGATTTTATAGCGCAAAACACACCATATACGAGCTTTTTTACGGTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCa < 2:1164931/140‑1 (MQ=255) cttaTTTAATCGCGCCAACCACACCATATACCCCCTTTTTTACGCTACACACGGGTGACAATG‑CACTTGTGTTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAg < 1:7625540/137‑1 (MQ=255) gATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑ACCTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGa < 2:6451316/140‑1 (MQ=255) tttttATCCCGCAAAACAGACCATAACCGCTGTTTTTTAGGCTTCACACGGG‑GCAAATGTAAGTTTTGGAAAAATTTTCAACCTTGCCAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGAt < 1:1021519/139‑1 (MQ=255) tttttATAGCGCAAAAAACACCATATACGAGCTTTTTTACGCTTAACAAGGGTTACAATG‑AACTTGTGGTACAATTTACAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGAt < 2:3014063/139‑1 (MQ=255) tttttATAGCGAAAAACACACCATATACGATTTTTTTTACGATACACAAGGGTTACAATG‑AACTTGTGTTAAAATTTTCAAACTTCGTAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGAt < 1:4538835/139‑1 (MQ=255) aTTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGAt > 2:6671430/1‑140 (MQ=255) aTTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGATTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCTGAAAAACGACGGGGTGGGGAATCTCAAAGCCGATTACTTTTGGAACGCAGGAt > 2:3602083/1‑140 (MQ=255) tttATAGCGCAACACAGACCATATCCGAGCTTTTTTACGCTTCACACGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATaa < 2:1484417/140‑1 (MQ=255) tttATAGCGCAAACCAGACCATATACGAGCTTTTTTACGCTTCCCAAGGGTGACAATG‑AACTTGTGGTACATTTTTCAAACGTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATaa < 2:37709/140‑1 (MQ=255) tttATAGCGCAAAACCCACCATATACGAGCTTTTTTCCGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATaa < 2:2534847/140‑1 (MQ=255) tttATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACACGGGTGACAATT‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATaa < 2:7325761/140‑1 (MQ=255) tttATAGCGAAAAACAGACCATATACGAGATTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATaa < 2:5857025/140‑1 (MQ=255) ataGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACat > 2:6187/1‑140 (MQ=255) ataGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACat > 1:351778/1‑140 (MQ=255) gcAAAACAGACCATATACGAGCTTTTTTACGCTTCACACGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACg < 2:2631299/124‑1 (MQ=255) gcAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACg > 1:2631299/1‑124 (MQ=255) cAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGTAACGCAGGATAACATATTGCg > 1:4082427/1‑140 (MQ=255) | ATCAGATCAAAGCAAGACAATCAGGTTTTCGGGATCAGCACGTCGTTTATTTACAGTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGA > NZ_CP034943/3561846‑3562118 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |