| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 3,562,015 | A→C | 12.1% | intergenic (‑661/‑137) | EO946_RS18300 ← / → EO946_RS21105 | response regulator/HAMP domain‑containing histidine kinase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 3,562,015 | 0 | A | C | 12.1% | 788.9 / 12.8 | 383 | intergenic (‑661/‑137) | EO946_RS18300/EO946_RS21105 | response regulator/HAMP domain‑containing histidine kinase |
| Reads supporting (aligned to +/- strand): ref base A (181/124); new base C (2/67); total (183/200) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.42e-20 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 383 total aligned reads displayed.
ATCAGCACGTCGTTTATTTACAGTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAATTTCCTTTCTTAATGATTCAATCA > NZ_CP034943/3561879‑3562152 | aTCAGCACGTCGTTTATTTACAGTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAggg < 2:1936070/140‑1 (MQ=255)aTCAGCACGTCGTTTATTTACAGTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAggg < 2:3566644/140‑1 (MQ=255) aCGTCGTTTATTTACAGTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACaa < 1:6888754/140‑1 (MQ=255) gTGCAAATCGCATCTATTTTAATGGGCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTGACGCTTCACAAGGGTGACAATG‑AACTTGTGGTAGaa > 1:5723440/1‑140 (MQ=255) gTGCAAATCGCATCTATTTTAATGGCCCATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACaa > 1:797621/1‑140 (MQ=255) gTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGAGAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTTCGCTTCAGAAGGGTGACAATG‑AAGTTGTGGTACaa > 2:633943/1‑140 (MQ=255) gTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACaa > 1:3809148/1‑140 (MQ=255) gTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACaa > 2:2171524/1‑140 (MQ=255) gTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACaa > 2:6033870/1‑140 (MQ=255) gTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACaa > 2:7196045/1‑140 (MQ=255) gTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAACGGTGACAATG‑AACTTGTGGTACaa > 2:5896449/1‑140 (MQ=255) tGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAAt > 2:1698425/1‑140 (MQ=255) aTCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACtt > 2:4606321/1‑140 (MQ=255) aTCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACtt > 1:2247433/1‑140 (MQ=255) aTCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACtt > 1:918954/1‑140 (MQ=255) aTGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACg > 2:2603110/1‑140 (MQ=255) aTGGCCAATTAATAGGAAAACGCGCAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAAGG‑AACTTGTGGTACAATTTTCAAACTTCGGAACAACg < 2:6657330/140‑1 (MQ=255) ggCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGcc > 2:3687499/1‑140 (MQ=255) gCCACTTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGTTACAATTTTCAAACTTCGGAAAAACGCCg > 2:7647264/1‑140 (MQ=255) gCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACCAGCTTTTTTACGCTTCACAAGGGTGACAATC‑AACTTGTGGGAGAATTATCAAACATCGGAAAAACGCCg > 2:5083246/1‑140 (MQ=255) cAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTtg > 1:5467423/1‑106 (MQ=255) aTAGCACAAAGCGGAAGCCCTTAAAATAAACCTTATTTTATCGCCCAAAACACACCATATACGAGCTTTTTTACGCTTCACACGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGTAAAAACGCCGGGGTgggg < 1:6582994/140‑1 (MQ=255) aacgCGGACGCCCTTAAAATAACCCTGATTTTATAGCGCAAACCCCCCCATATACGCGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCa < 2:6275454/137‑1 (MQ=255) aaaGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGACTCGCa > 1:4150473/1‑140 (MQ=255) aaaGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCa < 2:1481025/140‑1 (MQ=255) aaaGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCa > 2:4826500/1‑140 (MQ=255) aaaGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGGGGGGAATCGCa > 2:547980/1‑140 (MQ=255) aaaGCGGAAGCCATTAAAAAAAACTTTTTTTTATAGCGCAAAACACACCATATCCGCGATTTTTTACGCTTCACCCGGGTCACAATC‑AACTTGTGGTACAATTTTCAAACTTCGCAAAAACGCCGGGGTGGGGAATCGCa < 1:7436450/140‑1 (MQ=255) aaGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCaa > 1:3498632/1‑140 (MQ=255) aGCGGAAGCCCTTCAAATTAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTCCAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCaaa > 1:470311/1‑140 (MQ=255) aGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGACTCGCaaa > 1:3120457/1‑140 (MQ=255) aGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCaaa > 1:7656042/1‑140 (MQ=255) aGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCaaa > 2:7124245/1‑140 (MQ=255) aGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCaaa > 1:4795600/1‑140 (MQ=255) aGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTGTTTTACGCATCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCaaa > 1:705046/1‑140 (MQ=255) aGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATAGACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGATAGACGCCGGGGTGGGGAAGCGCaag > 1:3995983/1‑139 (MQ=255) aaGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAggg > 1:4873207/1‑72 (MQ=255) accccTTCAAATAAACATTATTTTATAGCGAAACACACACCATATACGACATTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGAt < 2:3991620/138‑1 (MQ=255) accccTTAAAATAAACCTGATTTTATAGCGAAAACCAGCCAATAAACGAGGTTTTTAACGGTTCCAACGGGTGACAATC‑AACGTGTGGTACAATTTACAAACTTCGCAAAAACGCCGGGGTGGGGAATCGCAAAGCCGAt < 1:4961524/138‑1 (MQ=255) aGCCCTTCAAATAAACCTGATTTTATCGCGCCACACCGCCCATATACGAGCTTTTTTACCCGTCACAAGGGTGACCAGG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGAt < 2:4275433/140‑1 (MQ=255) aGCCCTTAAAATAAACCTGATTTTATCGCGCAAAACAGACCATATACGCGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGCAAAAACGCCGGGGTGGGGAATCGCAAAGCCGAt < 2:2839980/140‑1 (MQ=255) cTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACt > 1:1494358/1‑140 (MQ=255) tCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACttt > 1:5782713/1‑140 (MQ=255) tCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACttt > 1:6056361/1‑140 (MQ=255) tCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACttt > 2:4149881/1‑140 (MQ=255) tCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATATTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACttt > 2:3374884/1‑140 (MQ=255) tCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCGTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGACTCGCAAAGCGGATTACgtt > 2:6848355/1‑140 (MQ=255) aaaaaaACCTGATTTTATCGCGAAAAACCGACCATATACGAGCTTTTTTACGCTTCACACGGGTGACAATG‑AAGTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTg < 1:2391595/140‑1 (MQ=255) tAACCCTTATTTTATAGCGCAAAACACCCCATATACCCGCTTTTTTACGATTCACAAGGGTGAAAATC‑AACTGGTGGTACAATTTACAAACTACGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGaa < 1:7150387/140‑1 (MQ=255) tAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGaa < 2:1341832/140‑1 (MQ=255) aaaaCCTGATTTTATAGCGAAAAACAGACAATATCCGCGTTTTTTTCCGATACACAAGGGTGACAATG‑AACTTGTGGTAAAATTTACAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGaa < 1:621194/139‑1 (MQ=255) aaaCCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAAc > 1:2533216/1‑140 (MQ=255) aaCCTTTTTTTATAGCGAAAAACACACCATATACGAGATTTTTTCCGATTCACCCGGGTGACAATT‑AAGTTGTGTTAAATTTTTAAAACTGCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACg < 1:3684443/140‑1 (MQ=255) aaCCTTTTTTTAAAGCGAAAAACCCACCATATCCGCCCTTTTTACCTGTTCCCAAGGGTCACATTG‑AATTTGTGTTACATTTTGCAAACTTCGCAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACg < 1:1698425/140‑1 (MQ=255) aaCCTTATTTTATAGCGCAAAACTGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGAAAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACg < 2:5578692/140‑1 (MQ=255) aaCCTTATTTAATACCGCAAAACAGACCCTATACGAGCTTTTTTACGCTTCACACGGGTGACACTG‑ACCTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACg < 1:6753340/140‑1 (MQ=255) aaCCTGTTTTTATAGCGCAAACCAGCCCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAAGG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACg < 2:2036657/140‑1 (MQ=255) aaCCTGTTTTTATACCGCAAAACACACGAAATACGTGCTTTTTTACGCTTCACACGGTTGAAACTG‑ACCTTGTGGTAAAATTTTCAAAGTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACg < 1:6678457/140‑1 (MQ=255) aaCCTGATTTTATCGCCCAAAACACCCCATATACGAGATTTTTTACGCTTCAAAAGGGTCACATTG‑AAGTTGTGGTACAATTTTCAAACTTCGGAAACACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACg < 1:3615320/140‑1 (MQ=255) aaCCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACACGGGTGAAAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACg < 2:1444357/140‑1 (MQ=255) aaCCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGGGACAATG‑ACCTTGTGGTACATTTTTCAAACTTCGTAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACg < 2:2366350/140‑1 (MQ=255) aaCCTGATTTTATAGCGAAAAACACCCCATATACCAGCTTTTTTACGCTTCACAAGGGTGACAATT‑AACTTGTGGTAAAATTTACAAACTTCGTAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACg < 1:6337324/140‑1 (MQ=255) aaCCTGATTTTATAGCGAAAAACACACCATATACGAGCTTTTTTACGCTTCACACGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACg < 2:3468458/140‑1 (MQ=255) aaCCTGATATAATAGCGCAAAACACACCATAACCGAGATTTTTTACGCTTCACAAGGGTCACAATG‑AACTTGTGGTACAATTTAAAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACg < 1:5514730/140‑1 (MQ=255) aCCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGc > 1:461517/1‑140 (MQ=255) aCCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGc > 1:2038772/1‑140 (MQ=255) aCCTGATTTTATAGCGAAAAACACACCATATACGCGATTTTTTACGCTTCCCACGGGTGACAATG‑AACTTGTGGAACAATTTACAAACTGCGCAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGc < 1:28489/140‑1 (MQ=255) cctttttttATAGCGAAAAACAGACAATCTACGAGATTTTTTACGCTTCACCAGGGTTACAATG‑AACTTGTGGTACATTTTTCAAACTTCGCAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCa < 1:7257253/135‑1 (MQ=255) ccTTATTTTATAGCCCAAAACACACCATATCCGAGATTTTTTACGCTACACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCa < 1:5200840/140‑1 (MQ=255) ccTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCa < 2:3271423/140‑1 (MQ=255) ccTGATTTTATAGCGCAAAACACACCATATACGAGCTTTTTTACGGTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCa < 2:1164931/140‑1 (MQ=255) cttaTTTAATCGCGCCAACCACACCATATACCCCCTTTTTTACGCTACACACGGGTGACAATG‑CACTTGTGTTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAg < 1:7625540/137‑1 (MQ=255) tGATTTTATAGCGCAAACCACACCATATCCGCGGTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAgg < 2:5819486/140‑1 (MQ=255) tGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAgg < 2:5646595/140‑1 (MQ=255) tttttATCCCGCAAAACAGACCATAACCGCTGTTTTTTAGGCTTCACACGGG‑GCAAATGTAAGTTTTGGAAAAATTTTCAACCTTGCCAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGAt < 1:1021519/139‑1 (MQ=255) tttttATAGCGAAAAACACACCATATACGATTTTTTTTACGATACACAAGGGTTACAATG‑AACTTGTGTTAAAATTTTCAAACTTCGTAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGAt < 1:4538835/139‑1 (MQ=255) aTTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGAt < 2:6173992/140‑1 (MQ=255) aTTTTATAGCGAAAAAAACACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTACGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGAt < 2:3777894/140‑1 (MQ=255) aTTTTATAGCCCAAAACACACAATATCCGAGATTTTTTACGCTTCACACGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGCAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGAt < 1:3361984/140‑1 (MQ=255) tttATAGCGCAAAACCCACCATATACGAGCTTTTTTCCGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATaa < 2:2534847/140‑1 (MQ=255) tttATAGCGCAAAACAGCCCATATACGAGTTTTTTTACGCTACACACGGGTCACAATG‑ACGTTGTGTTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATaa < 1:3428931/140‑1 (MQ=255) taGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACata > 1:1332590/1‑140 (MQ=255) gcAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAATCGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGc > 1:4342243/1‑140 (MQ=255) cAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACACTTTTCACACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCg > 1:7564469/1‑140 (MQ=255) accccctataCGAGCTTTTTTACGCTTCACACGGGTGACACTG‑AAATTGTGGTACAATTTTCAAACTTCGGAAATACGCCGGGGTGGGGAATCGCAAAGACGATTACTTTTGGAACGCAGGATAACATATTGCgagagat < 2:7380613/134‑2 (MQ=255) aCCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACa > 2:5342238/1‑140 (MQ=255) aCCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACa > 2:3896523/1‑140 (MQ=255) aCCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACa > 2:2963776/1‑140 (MQ=255) aCCATATACGAGCTTTTTTACGATTCACAAGGGTGACAATG‑AACTTGTGGTACAATTATCAAACTTAGGAAAAAAGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGATAGAACa > 2:3076589/1‑140 (MQ=255) aCGAGCTTTTTGACGCTTCACCAGGGTGACAATG‑AACGTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAATTTc < 2:6453844/140‑1 (MQ=255) gAGCTTTTTTACGCTTCACATGGGTGACAATG‑AAGTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAATTTCCt < 1:4494056/140‑1 (MQ=255) cTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATaa < 2:4428899/111‑1 (MQ=255) tttttACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAATTTCCTTTCtt > 2:866779/1‑140 (MQ=255) ttttACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAATTTCCTTTCTTa > 2:7075112/1‑140 (MQ=255) tttcccattCACAAGGGTGACAAGT‑AACTTGTGGTACAATTTTCAAACTTCGTAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAATTTCCTTTCTTaa < 1:5555025/133‑1 (MQ=255) tttCCGCTTCACAAGGGTGACAATG‑AACTTTTGGTACAATTTTCAAACTGCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAATTTCCTTTCTTaa < 2:4941375/140‑1 (MQ=255) tttACGCTTCACACGGGTGACAATG‑AACTGGTGGGACAATTGTCAAACGTCGGAACAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAATTTCCTTTCTTaa < 2:4728354/140‑1 (MQ=255) tttACGCTTCACACGGGTGACAATG‑AAATTGTGTTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAATTTCCTTTCTTaa < 1:535220/140‑1 (MQ=255) ttgaCGCTTCCAAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAATTTCCTTTCTTaa < 2:6736733/137‑1 (MQ=255) cacaCGGGTGACAATT‑AACTTGTGGTACAATTTTCAAACTGCGTAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAATTTCCTTTCTTAATGATTCAAt < 1:1202038/140‑1 (MQ=255) | ATCAGCACGTCGTTTATTTACAGTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCATATACGAGCTTTTTTACGCTTCACAAGGGTGACAATG‑AACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAATTTCCTTTCTTAATGATTCAATCA > NZ_CP034943/3561879‑3562152 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |