| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 316,262 | C→A | 8.2% | Q28K (CAA→AAA) | opuAA → | glycine/proline betaine ABC transporter ATP‑binding protein OpuAA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 316,262 | 0 | C | A | 8.2% | 924.5 / 10.0 | 384 | Q28K (CAA→AAA) | opuAA | glycine/proline betaine ABC transporter ATP‑binding protein OpuAA |
| Reads supporting (aligned to +/- strand): ref base C (214/122); new base A (2/46); total (216/168) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.64e-16 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 385 total aligned reads displayed.
GAATGTTACATAAGTGTTACGGTTATAAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGC‑TTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATCAAC > NZ_CP034943/316128‑316401 | aTGTTACATAAGTGTTACGGTTATAAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGC‑t > 2:747750/1‑140 (MQ=255) tACATAAGTGTTACGGTTATAAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGC‑TTGcc < 2:2955948/140‑1 (MQ=255) tACATAAGGCTTACGGTTAAAAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGTCAAACCAATTAAGATAAAGGTCGAGACAGTATGTGACATTTTTGGGACCCCAACAAAGAAAGCAGTTCAAATGC‑TTGcc > 2:277462/1‑140 (MQ=255) aaGTGTTACGGTTATAAGGATTGTTTAATAGGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGC‑TTGCCAACgg > 2:4788231/1‑140 (MQ=255) gtgtTACGGTTATAAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAATAAAGCAGTTCAAATGA‑TTGCCAACGGaa > 1:1627291/1‑140 (MQ=255) gtTACGGTTATAAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGC‑TTGCCAACGGAAAg > 1:4705312/1‑140 (MQ=255) ttACGGTTATAAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAAGCAATTCAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGCAACAAAGACAGAAAGCCGGTCAAATGC‑TTGCCCACggggcgc > 2:1368609/1‑135 (MQ=255) aCGGTTATAAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGC‑TTGCCAACGGAAAGACa > 2:4304530/1‑140 (MQ=255) aCGGTTATAAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGC‑TTGCCAACGGAAAGACa > 1:2272153/1‑140 (MQ=255) aCGGTTATAAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGC‑TTGCCAACGGAAAGACa > 1:196461/1‑140 (MQ=255) aCGGTTATAAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCACTTCAAATGC‑TTGCCAACGGAAAGACa > 2:1678456/1‑140 (MQ=255) tataAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGC‑TTGCCAACGGAAAGACaaaaaa > 2:3943441/1‑140 (MQ=255) ataAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAATTTTTTGGGAAACAAACAAAGAAAGCGGTTCAAATGC‑TTGCCAACGGAACGACaaaaaac > 2:5190309/1‑139 (MQ=255) ataAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAATAAAGCAGTTCAAATGC‑TTGCCAACGGAAAGACaaaaaaa > 2:1087598/1‑140 (MQ=255) ataAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGC‑TTGCCAACGGAAAGACacaaaaa > 2:1512323/1‑140 (MQ=255) ataAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGC‑TTGCCAACGGAAAGACaaaaaaa > 1:2410901/1‑140 (MQ=255) ataAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAAGTGTTGGGAAACAAACAAAGAAAGCAGTTCAAATGC‑TTGCCAACGGAAAGACaaaaaaa > 2:360455/1‑140 (MQ=255) aGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGC‑TTGCCAACGGAAAGACAAAAAAagag < 1:1341740/140‑1 (MQ=255) aTTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGC‑TTGCCAACGGAAAGACAAAAAAAGAGATc > 2:924813/1‑140 (MQ=255) tGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGTAAACAAACAAAGAAAGCAGTTCAAATGC‑TTGCCAACGGAAAGACAAAAAAAGAGATCCt > 1:3479202/1‑140 (MQ=255) tGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGC‑TTGCCAACGGAAAGACAAAAAAAGAGATCCt > 1:3069763/1‑140 (MQ=255) tGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGC‑TTGCCAACGGAAAGACAAAAAAAGAGATCCt > 1:3614278/1‑140 (MQ=255) tGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGC‑TTGCCAACGGAAAGACAAAAAAAGAGATCCt > 1:1255452/1‑140 (MQ=255) tGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGC‑TTGCCAACGGAAAGACAAAAAAAGAGATCCt > 1:2053951/1‑140 (MQ=255) tGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGC‑TTGCCAACGGAAAGACAAAAAAAGAGATCCt > 1:2124268/1‑140 (MQ=255) tGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTATGGGAAACAAACAAAGAAAGAAGTTCAAATGC‑TTGACAACGGAAAGACAAAAAAAGAGATCCt > 2:1006736/1‑140 (MQ=255) tttAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGC‑TTGCCAACGGAAAGACAAAAAAAGAGATCCTGa > 1:818026/1‑140 (MQ=255) tttAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGC‑TTGCCAACGGAAAGACAAAAAAAGAGATCCTGa > 1:1848006/1‑140 (MQ=255) atGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGC‑TTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGa > 1:1209151/1‑140 (MQ=255) aGGGAAAATATGAGTGTAGATGAGAAACCAATTAATATAAAAGTCGAGAAAGGATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAAGGC‑TTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCgg > 1:2338607/1‑140 (MQ=255) aGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGC‑TTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCgg > 2:362571/1‑140 (MQ=255) aGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGC‑TTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCgg > 1:3758448/1‑140 (MQ=255) aGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGC‑TTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCgg > 1:2833402/1‑140 (MQ=255) aGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGC‑TTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCgg > 1:5233881/1‑140 (MQ=255) ggAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGC‑TTGCCAACGGAAAGACACAAAAAGAGATCCTGAAAGCGACCGGAt > 2:4173618/1‑140 (MQ=255) ggAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGC‑TTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGAt > 2:4873653/1‑140 (MQ=255) attaGTGTAGATGCCAAACCAATTAAGATAAAAGTCTAGAAAGTATCTAATATTTTTGGCAAACAAACAAAGAAAGCAGTCAAAATGC‑TTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGt < 2:453337/137‑1 (MQ=255) atGATTGTAGATCATAAACCAATTAATATAAAAGTCGAGAAAGTATATAAAATTTTTGGGAAACAAACAAAGAAAGCCGTTCAAATGC‑TTGCAACCGGAAACAAAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGt < 2:4599949/140‑1 (MQ=255) ttttAGATGAGAAACCAATTAAGATAAAAGTCGATAAATTATATAAAATTTTTGGCAAAAAAAAAAAGAAAGCTGTTAAAATGC‑TTGCCAACGCAAACAAAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTggg < 1:177673/137‑1 (MQ=255) ttgtATATAACAAACAAATTAATAAAAACTTCGACAACTTATATAAATTTTTGGCCAAAAAAACAACCAAACCAG‑TAAAACGCGTTCCCACCCTAAACAAAAAAAAAGACACCCCGAAAGCGACCGGATCAACCGTTggg < 1:484177/139‑1 (MQ=255) tgtAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAATAAAGCAGTTCAAATGC‑TTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTgggg > 1:2558937/1‑140 (MQ=255) tAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGC‑TTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTa > 1:330956/1‑140 (MQ=255) gATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGC‑TTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTaaa > 1:1069383/1‑140 (MQ=255) cacccAATAACGACAAACGTCGCGAAAGGACCTAAAATTGTGGGCAAACAAAAAAACAACGCATTTCAATGCC‑TGGCCACCGGACCGCCAAAAAACCACATCGTGAACGCGACCGGATCAACCGTTGGGGTAAATCAAGc < 1:907667/137‑1 (MQ=255) aaaCCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGC‑TTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGc < 2:2491996/140‑1 (MQ=255) aaaCCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGC‑TTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGc > 1:3218138/1‑140 (MQ=255) aaaCCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGC‑TTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGc > 1:199826/1‑140 (MQ=255) aCCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGC‑TTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAg > 1:2474483/1‑140 (MQ=255) aCCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGC‑TTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGGTGGGGTAAATCAAGCAg > 1:680591/1‑140 (MQ=255) aCCAATTAAGATAAAAGTCGAGAAAGTAGCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGC‑TTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAg > 2:780978/1‑140 (MQ=255) aaTTAATATAAAAGTCTATAAAGTATATAAAATTTTTGGCAAACAAACAAAGAAAGCAGTTAAAAGGC‑TTGCCAACGGAAAGAAAAAAAAAGACATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGAtt < 2:2125639/140‑1 (MQ=255) ttAAGATCAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGC‑TTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGAtttt > 2:1638682/1‑140 (MQ=255) tAAGCTACAAGCCCAGAAACTAACTAAAATTTTGGCTAACCAAACAACGAACCCACTAAAAATGA‑TTGCCAACCTCAATACAAAAAACCAGACCCGGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTg < 2:1744804/140‑1 (MQ=255) tAAGATAAAAGTCGAGAAAGTATCTAAAATTTTGGGCAAAAAAACAAACAAAGCAGTTCAAATGG‑TTCCCACCGCAAAGAAAAAAAAAGAGATCCTCAACGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTg < 1:4623854/140‑1 (MQ=255) tAAGAAAAAAGTAGACAATCTATCTAAAATTTTTGGTAAACAAAAAAATAAAGCAGTTCAAAGGC‑TTGCCAACGCAACTACAAAAAAAGTGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTg < 2:4411645/140‑1 (MQ=255) tAACATAAAAGTCGACAACGTATCTAAAATTTTGGGCAAAAAAACAAACAAACCAGTTCAAAGCC‑TTGCCAACGCAAACAAAAAAAAACAGATCCTCAACGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTg < 1:943616/140‑1 (MQ=255) tAACATAAAAGTCGACAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAACCAGTTCAAATGC‑TTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTg < 2:4710996/140‑1 (MQ=255) aaacaaaaaaCTCCACAAAGTATATAAATTTTTTGCCAACAAAACAAACAACCCCGTTCAAAGGC‑TTCCCAACGCAAACACAAAAAAAGACATCCTCAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTg < 1:3943441/134‑1 (MQ=255) ataTAAAAGTCTATAAAGTATATAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGC‑TTGCCAACGGAAACACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGAt < 2:1227086/138‑1 (MQ=255) acaaaaaaGTCGACAAAGTATATAAAATTTTTGGTAAACAAACAAAGAAAGCAGTTAAAATGC‑TTGCCAACGCAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGAt < 2:3504237/136‑1 (MQ=255) aGATAAAAGTCGACAAATTAAAAAAATTTTTTGGGAAACAAACAAACAACCCAGTAAAAATGC‑TGCCCACCGCAAACACAAAAAAAGAGATCCTCAACGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGAt < 1:3625574/140‑1 (MQ=255) aGACAAAAGCCGACACAGTAACTAAAATTTTTGGCAAACAAACAAACAACCCAGTTCAAATGC‑TTCCCACCGCAAACACAAAAAAAGAGACCCTCAACGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGAt < 1:4382482/140‑1 (MQ=255) aGAAAAAAGTCGAGAAAGTAACTAAAATTTTTGGGAAAAAAAAAAAGAAAGCAGTTAAAATGC‑TTCCCACCGCAAAGACAAAAAAAGAGATCCTCAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGAt < 1:3836771/140‑1 (MQ=255) ctAAAAGTCGCGAAAGTATCTAAACTTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGC‑TTGCCAACGGAAAGACAAAAAAAGACATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGt < 2:5044279/139‑1 (MQ=255) aaaGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGC‑TTGCCAACGGAAAGAAAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGtata < 2:1049290/140‑1 (MQ=255) aaGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGC‑TTGCCAACGGACAGACACAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTatat > 2:3485120/1‑140 (MQ=255) aaGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGC‑TTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTatat > 2:4089408/1‑140 (MQ=255) aaGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGC‑TTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATGTTGATGTatat > 2:2900378/1‑140 (MQ=255) ctctataaaGTTTATAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGC‑TTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATatga < 2:3868820/134‑1 (MQ=255) ctataaaGTATATAAAATTTTTGGTAAACAAAAAAAGAAAGCAGTTCAATTGC‑TTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATatgatg < 2:4467334/136‑1 (MQ=255) gataaaTTATATAAATTTTTTGTTAAAAAAAAAATTAAAGCTTTTCAAATGC‑TTGCAATCGTAAACAAAAAAAAACATTTGCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATgg < 1:1678456/137‑1 (MQ=255) gagaAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGC‑TTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATgg > 1:4536927/1‑140 (MQ=255) gagaAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGC‑TTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATgg > 1:511798/1‑140 (MQ=255) gagaAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGC‑TTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATCTATATGATgg > 2:3420493/1‑140 (MQ=255) cacaaaGTATCTAAATTTTTTGGCAAACAAACAAACAACCCATTTAAATTGC‑TTGCCAACGGAAAGACAAAAAAATACACCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATgg < 1:4304530/137‑1 (MQ=255) aGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTAAAATGC‑TTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTgaga < 2:4131873/140‑1 (MQ=255) aTCTAAATTTTTTGGTAAACAAAAAAAGAAAGCAGTACAAAGGC‑TTGCCACCGTAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGatat < 2:4986096/140‑1 (MQ=255) aTTTTTGGGAAACAAACCACGAACGCAGTTCAACTGC‑TGCCCAACGCAAACAAAAAAAAAGACATCCTGAACGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGtcat < 1:1006736/140‑1 (MQ=255) tgtttGGCAAACAAACAAAGAACCCACTTCACATGG‑TTGCCACCGCAAAGAAAAAAAAAGATATCCTTAACGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGtcatc < 1:3374137/138‑1 (MQ=255) tttcgcaaacaaacaaacAAAGCAGTTCAATGGC‑TTCCCAACGGAAAGACAAAAAAAGACAACCTCAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTcatcat < 1:3054733/134‑1 (MQ=255) tttGGTAAAAAAACAAAGAAAGCAGTTCAAATGC‑TTGCAAACGCAAACACAAAAAAAGAGATCCTCAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTcatcat < 2:2035307/140‑1 (MQ=255) tttGGGAAACAAACAAAGAAAGCGGTTCAAATGC‑TTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTcatcat < 2:2413370/140‑1 (MQ=255) tttGGCAAACAAACAAAGAAAGCAGTTAAAATGC‑TTGCCAACGCAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTcatcat < 2:330956/140‑1 (MQ=255) tttGGCAAACAAACAAAGAAACCATTTAAAATGC‑TTGCCAACGCAAACACAAAAAAAGACAGCCGGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTcatcat < 1:4993889/140‑1 (MQ=255) tGGGAAACAAACAAATAAAGCATTTCAAATGC‑TTGCCACCGGAAAGACAAAAAATGATATCCTCAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATgg < 2:2272153/140‑1 (MQ=255) tGGGAAAAAAACAAAGAACGCAGTTCAAATGC‑TTGCCAACGCAAACACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATgg < 1:270164/140‑1 (MQ=255) tGGCAAACAAAAAAATAAAGCAGTACAAATGC‑TTGCCAACGCAAACAAAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATgg < 1:577586/140‑1 (MQ=255) tGGCAAACAAAAAAAGAAAGCAGTTCAAATGC‑TTCCCAACGCAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATgg < 2:1925454/140‑1 (MQ=255) ggggAAACAAACAAAGAAAGCAGTTAAAATGC‑TTGCCAACGTAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATgg < 2:2252114/139‑1 (MQ=255) gggcaaacaaaaAAAGAAACCATTACAATGGC‑TGGCCAACCCAAACAAAAAAAAAGAGACCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATgg < 1:4137112/136‑1 (MQ=255) gAAACAAACAAAGAAAGCCGTTCAAATGC‑TTGCCAACGCAAAGACAAAAAAAGAGAGCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTc < 2:3148644/140‑1 (MQ=255) aacaaaaaAATAAACCCTTTCAATTGC‑TTGCCAACGCAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTa < 2:5078103/140‑1 (MQ=255) acaaacaaAGCAGTTCAAATGC‑TTGCCAACGTAAAGACAAAAAAAGAGATCCTTAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAgg < 2:2672650/140‑1 (MQ=255) acaaaGAACGCTGTACAAATGC‑TTCCAACCGCAAACAAAAAAAAAGAGAGCCTCAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAgg < 1:775067/140‑1 (MQ=255) aaaacaaagCATTTAAAATCG‑TTGCCAACTGAAAGACAAAAAAAGAGATCGTTAAAGCGACCTGTTCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAggg < 2:3699449/139‑1 (MQ=255) agCAGTTCAAATGC‑TTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTa > 2:3223657/1‑140 (MQ=255) aGTTCAAATGC‑TTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAAt < 2:3069688/140‑1 (MQ=255) tttCAAATGC‑TTGCCACCGGAAACACAAAAAAAGAGATCCGGAACGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATc < 2:1755726/139‑1 (MQ=255) ttCAAATGC‑TTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATCa > 2:4905896/1‑140 (MQ=255) cAACTGC‑TTGCCAACGTAAAGAAAAAAAAAGAGATCCTCAACGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATCAAc < 2:875185/140‑1 (MQ=255) | GAATGTTACATAAGTGTTACGGTTATAAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAAATGC‑TTGCCAACGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATCAAC > NZ_CP034943/316128‑316401 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |