| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 2,139,480 | A→C | 6.3% | A119A (GCT→GCG) | deoD ← | purine‑nucleoside phosphorylase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 2,139,480 | 0 | A | C | 6.3% | 1103.0 / 11.5 | 425 | A119A (GCT→GCG) | deoD | purine‑nucleoside phosphorylase |
| Reads supporting (aligned to +/- strand): ref base A (256/123); new base C (2/44); total (258/167) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.35e-17 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 428 total aligned reads displayed.
GCGAATCGTCGTTGTAGAACTGATCAGCTGTAAATACGCTTCCTACCGTCACCGG‑CACGCCTTTATCCTTTGCGGCATCATAGGCATTTTTTAAAAGCTCGAAATCTGCGCAAGGCGCAAAATCAATACTTCCGAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCAAAATGACGTCCCGCACTTTGACATCTTTGCGGATAGCGCCGCAAGAACCTACTCTTATTAGATTTTGCACATCGTAGCTTTGAATTAATTCATT > NZ_CP034943/2139344‑2139617 | cGATTCGTCGTTGTAGAACTGATCAGCTGTAAATAGGGTTCCTACCGTCACCGG‑AACGCCTTTTTCCTTTGGGGCATCTTAGGCATTTTTTAAAAGCTCGAAATCTGCGCAAGGCGCAAAAACAATAGTTCCGAACGCGa < 2:1187497/140‑1 (MQ=255) aaTCGTCTTTGTACACCTGATCAGCGTTAAATACGCTTCCTCCCGCCCCCGG‑CACGCCTTTATCCTTTGCGGCATCATAGGAATTTTTTAAAAGCTCGAAATCTGCGCAAGGCGAAAAATAAATACTTCCCAAAGCGAct < 1:4078889/140‑1 (MQ=255) aaTCGTCGTTGTAGAACTGATCAGCTTTAAATACGCTTCCTACCGTCACCGG‑CCCGCCTTTATCCTTTGCGGCATCATAGGAATTTTTTAAAAGCTCGAAATCTGCGCAAGGCGCAAAATAAATACTTCCGAAAGCGAct < 2:3730379/140‑1 (MQ=255) aaTCGTCGTTGTACACCTGATCAGCTGTAAAAACGCTTCCTACCGCCACCGG‑CACGACTTTATCCTTTGCGCCATCATAGGCATTTTTTAAAAGCTCGAAATCTGCGAACGGCGAAAAATAAATACTTCCGAAAGCGAct < 2:3885146/140‑1 (MQ=255) gggtTGTAGAACTCATCAGCTTTAAATACGCTACCTACCGACACCGC‑CACCCCTTTATCCTTGGCGCCATCATAGCCATTTTTTAAAAGCTCGAAATCTGCCCAAGGCGAAAAATCAATACTTCCGAAAGCGACTCTGtt < 2:4448612/138‑1 (MQ=255) tGTATAACTGATCAGCTTTAAATCCGCTTCCTCCCGTCACCGG‑CACGCCTTTATCCTTTGCGGAATCATAGGAATTTTTAAAAAGCTCTAAATCGGCGCACGGCGAAAAATCAATACTACCCAACGCGACTCTGTTCAtt < 1:3942890/140‑1 (MQ=255) cttctCAGCTGTAAATACGCTTCCTA‑CGTGCCCGGCCACGCCTTTAGCCTGTGCGGAATCAGCGCCTTTTTTTAAAACCTCCAAATCGGCGCACGGCCCAAAATCAATCCGACCCAACGCGACTCTGTTCATTTGTGAAt < 1:568747/136‑1 (MQ=255) cTGCTCAGGTGTAAATCCGCTTCCTCCCGTCCCCGG‑CACGCCTTTATCCTTTGCGGCATCATAGCCTTTTTTTAAACGCTCCAAATCTGCCAAAGGCGCAAAATCAATACTGCCGAAAGCGACTCTGTTCATTTGTGAAt < 1:4984222/140‑1 (MQ=255) cTGATCAGCTTTAAATAGGGTTCATACCGTCACGGG‑AACGCCTTTATCCTTTGCGGCATAATAGTCATTTTTTAAAAGCTCTAAATCTGCGCAAGGCGAAAAATCAATACTTCCGAAAGCGACTCTGTTCATTTGTGAAt < 2:1877233/140‑1 (MQ=255) aTCAGCTGTAAATACGCTTCCTACCGTCACCGG‑CACGCCTTTATCCTTTGCGGCATCATAGGCATTTTTTAAAAGCTCGAAATCTGCGCAAGGCGCAAAATCAATACTTCCGAAAGCGACTCTGTTCATTTGTGAATCAg > 1:4508400/1‑140 (MQ=255) aTCAGCTGTAAATACGCTTCCTACCGTCACCGG‑CACGCCTTTATCCTTTGCGGCATCATAGGCATTTTTTAAAAGCTCGAAATCTGCGCAAGGCGCAAAATCAATACTTCCGAAAGCGACTCTGTTCATTTGTGAATCAg > 2:109374/1‑140 (MQ=255) aTCAGCTGTAAATACGCTTCCTACCGTCACCGG‑CACGCCTTTATCCTTTGCGGCATCATAGGCATTTTTTAAAAGCTCGAAATCTGCGCAAGGCGCAAAATCAATACTTCCGAAAGCGACTCTGTTCATTTGTGAATCAg > 2:599518/1‑140 (MQ=255) aTCAGCTGTAAATACGCTTCCTACCGTCACCGG‑CACGCCTTTATCCTTTGCGGCATCATAGGCATTTTTTAAAAGCTCGAAATCTGCGCAAGGCGCAAAATCAATACTTCCGAAAGCGACTCTGTTCATTTGTGAATCAg > 1:5198341/1‑140 (MQ=255) aTCAGCTGTAAATACGCTTCCTACCGTCACCGG‑CACGCCTTTATCCTTTGCGGCATCATAGGCATTTTTTAAAAGCTCGAAATCTGCGCAAGGCGCAAAATCAATACTTCCGAAAGCGACTCTGTTCATTTGTGAATCAg > 1:4002061/1‑140 (MQ=255) aTCAGCTGTAAATACGCTTCCTACCGTCACCGG‑CACGCCTTTATCCTTTGCGGCATCATAGGCATTTTTTAAAAGCTCGAAATCTGCGCAAGGCGCAAAATCAATACTTCCGAAAGCGACTCTGTTCATTTGTGAATCAg > 2:3500519/1‑140 (MQ=255) cTGTAAATACGCTTCCTACCGTCACCGG‑CACGCCTTTATCCTTTGCGGCATCATAGGCATTTTTTAAAAGCTCGAAATCTGCGCAAGGCGCAAAATCAATACTTCCGAAAGCGACTCTGTTCATTTGTGAATCAGTTGAg > 1:2070401/1‑140 (MQ=255) gTAAATACGCTTCCTACCGTCACCGG‑CACGCCTTTATCCTTTGCGGCATCATAGGCATTTTTTAAAAGCTCGAAATCTGCGCAAGGCGCAAAATCAATACTTCCGAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGa > 2:3664627/1‑140 (MQ=255) aaTACGCTTCCTACCGTCACCGG‑CACGCCTTTATCCTTTGCGGCATCATAGGCATTTTTTAAAAGCTCGAAATCTGCGCAAGGCGCAAAATCAATACTTCCGAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGt > 2:2802187/1‑140 (MQ=255) cGCTTCCTACCGTCACCGG‑CACGCCTTTATCCTTTGCGGCATCATAGGCATTTTTTAAAAGCTCGAAATCTGCGCAAGGCGCAAAATCAATACTTCCGAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATa > 1:4753774/1‑140 (MQ=255) cGCTTCCTACCGTCACCGG‑CACGCCTTTATCCTTTGCGGCATCATAGGCATTTTTTAAAAGCTCGAAATCTGCGCAAGGCGCAAAATCAATACTTCCGAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATa > 1:342843/1‑140 (MQ=255) gCTTCCTACCGTCACCGG‑CACGCCTTTATCCTTTGCGGCATCATAGGCATTTTTTAAAAGCTCGAAATCTGCGCAAGGCGCCACATCAATACTTCCGAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAg > 1:1146779/1‑140 (MQ=255) gCTTCCTACCGTCACCGG‑CACGCCTTTATCCTTTGCGGCATCATAGGCATTTTTTAAAAGCTCGAAATCTGCGCAAGGCGCAAATTCAATACTTCCGAAAGCGACTCTGTTCATTTGTGACTCAGTTGTGGATGTCATAg > 2:4724134/1‑140 (MQ=255) gCTTCCTACCGTCACCGG‑CACGCCTTTATCCTTTGCGGCATCATAGGCATTTTTTAAAAGCTCGAAATCTGCGCAAGGCGCAAAATCAATACTTCCGAACGCGACTCTGTTCATTTGTGAATCAGTTGCGGAGGTCATAg > 1:4285372/1‑140 (MQ=255) gCTTCCTACCGTCACCGG‑CACGCCTTTATCCTTTGCGGCATCATAGGCATTTTTTAAAAGCTCGAAATCTGCGCAAGGCGCAAAATCAATACTTCCGAAAGCTACTCTGTTCATTTGTGAATAAGTTGAGGATGTCATAg > 1:307182/1‑140 (MQ=255) gCTTCCTACCGTCACCGG‑CACGCCTTTATCCTTTGCGGCATCATAGGCATTTTTTAAAAGCTCGAAATCTGCGCAAGGCGCAAAATCAATACTTCCGAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAg > 1:1084280/1‑140 (MQ=255) gCTTCCTACCGTCACCGG‑CACGCCTTTATCCTTTGCGGCATCATAGGCATTTTTTAAAAGCTCGAAATCTGCGCAAGGCGCAAAATCAATACTTCCGAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAg > 1:2579924/1‑140 (MQ=255) gCTTCCTACCGTCACCGG‑CACGCCTTTATCCTTTGCGGCATCATAGGCATTTTTTAAAAGCTCGAAATCTGCGCAAGGCGCAAAATCAATACTTCCGAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAg > 2:4842826/1‑140 (MQ=255) gCTTCCTACCGTCACCGG‑CACGCCGTTATCCTTTGCGGCATCATAGGCATTTTTTAAAAGCTCGAAATCTGCGCAAGGCGCAAAATCAATACTTCCGACAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAg > 1:2323522/1‑140 (MQ=255) cTTCCTACCGTCACCGG‑CACGCCTTTATCCTTTGCGGCATCATCGGATTTTTTTAAAAGCTCTAAATCTGCGCAAGGCGAAAAATCAATCCTTCCGAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGc < 2:2480339/140‑1 (MQ=255) ttCCTACCGTCACCGG‑CACGCCTTTATCCTTTGCGGCATCATAGGCATTTTTTAAAAGCTCGAAATCTGCGCAAGGCGCAAAATCAATACTTCCGAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGcc > 1:1780692/1‑140 (MQ=255) tCCTACCGTCACCGG‑CACGCCTTTATCCTTTGCGGCATCATAGGCATTTTTTAAAAGCTCGAAATCTGCGCAAGGCGCAAAATCAATACTTCCGAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCa > 1:1001599/1‑140 (MQ=255) tCCTACCGTCACCGG‑CACGCCTTTATCCTTTGCGGCATCATAGGCATTTTTTAAAAGCTCGAAATCTGCGCAAGGCGCAAAATCAATACTTCCGAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCa > 1:1232002/1‑140 (MQ=255) tCCTACCGTCACCGG‑CACGCCTTTATCCTTTGCGGCATCATAGGCATTTTTTAAAAGCTCGAAATCTGCGCAAGGCGCAAAATCAATACTTCCGAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCa > 1:888790/1‑140 (MQ=255) tCCTACCGTCACCGG‑CACGCCTTTATCCTTTGCGGCATCATAGGCATTTTTTAAAAGCTCGAAATCTGCGCAAGGCGCAAAATCAATACTTCCGAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCa > 1:439494/1‑140 (MQ=255) tCACCGG‑CACGCCTTTATCCGTTGCGGCATCATAGGCATTTTTTAAAAGCTCGAAATCTGCGCAAGGCGCAAAATCAATACGTCCGAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATCGCCAAAAGGACg > 1:3776241/1‑140 (MQ=255) cACCGG‑CACGCCTTTATCCTTTGCGGCATCATAGGCATTTTTTAAAAGCTCGAAATCTGCGCAAGGCGCAAAATCAATACTTCCGAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCAAAATGACGt > 1:3124031/1‑140 (MQ=255) cACCGG‑CACGCCTTTATCCTTTGCGGCATCATAGGCATTTTTTAAAAGCTCGAAATCTGCGCAAGGCGCAAAATCAATACTTCCGAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCAAAATGACGt > 1:5075131/1‑140 (MQ=255) cACCGG‑CACGCCTTTATCCTTTGCGGCATCATAGGCATTTTTTAAAAGCTCGAAATCTGCGCAAGGCGCAAAATCAATACTTCCGAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCAAAATGACGt > 2:4016079/1‑140 (MQ=255) ccGG‑CACGCCTTTCCCCTTGGCGGCAAAATCGGAATTTTTTAAAAGCTCGAAATCTGCGCAAGGCGCAAAATCAATCCTTCCGAACGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCAAAATGACGTcc < 2:5158636/140‑1 (MQ=255) ccGG‑CACGCCTTTATCCTTTGCGGCATCATAGGCATTTTTTAAAAGCTCGAAATCTGCGCAAGGCGCAAAATCAATACTTCCGAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCAAAATGACGTcc < 2:4223722/140‑1 (MQ=255) gg‑CACGCCTTTATCCTTTGCGGCATCATTGGCATTTTTTAAAAGCTCGAAATCTGCGCAAGGCGCAAAATCAATACTTCCGAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCAAAATGACGTCCCg < 2:3809333/140‑1 (MQ=255) g‑CACGCCTTTATCCTTTGCGGCATCATAGGCATTTTTTAAAAGCTCTAAATCTGCGCAAGGCGCAAAATCAATCCTTCCCAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCAAAATGACGTCCCGc < 2:2640487/140‑1 (MQ=255) cACGCCTTTATCCTTTGCGGCATCATAGGCATTTTTTAAAAGCTCGAAATCTGCGCAAGGCGCAAAATCAATACTTCCGAAAGCGACTCTGTGCATTTGTGAATCAGTTGAGGATGTCATAGCCAAAATGACGTCCCGCa > 2:2767568/1‑140 (MQ=255) gCCTTTATCCTTGGCGGCATCATAGGCATTTTTTAAAAGCTCGAAATCTGCGCAAGCCGCAAAATCAATACTTCCGAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCAAAATGACGTCCCGCAcgt > 2:779824/1‑138 (MQ=255) tttATCCTTTGCGGAATCATAGGCATTTTTTAAAAGCTCGAAATCTGCGCAAGGCTAAAAATCAATACTTCCCAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCAAAATGACGTCCCGCACTTTGa < 2:1141115/140‑1 (MQ=255) tttATCCTCCGCGTCATCATAGTCATTGTTCAAAAGCTCCCAATCGGCCCAAGCCGCAAAATAAAACCTCCCGAACCCGACTCTGTTCATTTGTGAATCAGTGTAGGATGTCATAGCCAAAATGACGTCCCGCACTTTGa < 2:1748262/140‑1 (MQ=255) ttATCCTTTGCGGCATCATAGGCATTTTTTAAAAGCTCGAAATCTGCGCAAGGCGCAAAATCAATACTTCCGAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCAAAATGACGTCCCGCACTTTGAc > 1:4828427/1‑140 (MQ=255) ttATCCTTTGCGGCATCATAGGCATTTTTTAAAAGCTCGAAATCTGCGCAAGGCGCAAAATCAATACTTCCGAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCAAAATGACGTCCCGCACTTTGAc > 1:954365/1‑140 (MQ=255) ttATCCTTTGCGGCATCATAGGCATTTTTTAAAAGCTCGAAATCTGCGCAAGGCGCAAAATCAAAACTTCCGAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCAAAATGACGTCCCGCACTTTGAc > 2:2044101/1‑140 (MQ=255) tagccTTTGCCGCATCATATGAATTTTTTAAAAGCTCGAAATCTCCCCAAGGCGCAAAATCATTACTTCCGAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCAAAATGACGTCCCGCACTTTGACa < 2:2928218/137‑1 (MQ=255) tATCCTTTGGGGCATCATCGGCATTTTTTAAAAGCTCGAAATCTGCGCAAGGCGCAAAATCAATACTTCCGAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCAAAATGACGTCCCGCACTTTGACa < 2:2235793/140‑1 (MQ=255) tATCCTTTGCGGCATCATAGGAATTTTTTAAAAGCTCGAAATCTGCGCAAGGCGAAAAATCAATACTTCCGAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCAAAATGACGTCCCGCACTTTGACa < 1:4877023/140‑1 (MQ=255) tATCCTTTGCGGCATAATAGTAATTTTTTAAAAGCTCGAAATCTGCGCAAGGCGAAAAATCAATACTTCCGAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCAAAATGACGTCCCGCACTTTGACa < 2:4099662/140‑1 (MQ=255) aTCCTTTGCGGCATCATAGGCATTTTTTAAAAGCTCGAAATCTGCGCAAGGCGCAAAATCAATACTTCCGAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCAAAATGACGTCCCGCACTTTGACAt > 2:1789318/1‑140 (MQ=255) ttGCGGCATCATAGGCATTTTTTAAAAGCTCGAAATCTGCGCAAGGCGCAAAATCAATACTTCCGAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCAAAATGACGTCCCGCACTTTGACATCTTTg > 1:4216536/1‑140 (MQ=255) ttGCGGCATCATAGGCATTTTTTAAAAGCTCGAAATCTGCGCAAGGCGCAAAATCAATACTTCCGAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCAAAATGACGTCCCGCACTTTGACATCTTTg > 1:4583435/1‑140 (MQ=255) ttcGGCATCATAGGCATTTTTTAAAATATCGAAATCTGCTCAAGGCGCAAAATCAATACTTCCGAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCAAAATGACTTCCAGCACTTTGAAATCTTTGc > 2:1924547/3‑140 (MQ=255) tgaggCATCATAGGGATTTTTTAAAAGCTCGAAATCTGCGCAATGCGCAAAATCAATACTTCCGAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCAAAATGACGTCCCGCACTTTGACATCTTTGc > 2:1531461/4‑140 (MQ=255) tGCGGCATCATAGGCATTTTTTAAAAGCTCGAAATCTGCGCAAGGGGCAAAAACAAAACTTACAAAACCTACTCTGTTAAAATGTGAATCAGTTGAGGATGTCATAGCCAAAATGAAGTCACTCACTTTGACATCATTga > 2:5019539/1‑139 (MQ=255) tGCGGCATCATAGGCATTTTTTAAAAGCTCGAAATCTGCGCAAGGCGCAAAATCAATACTTCCGAAAGCGACTCTGTTCATTTGTGTATCAGTTGAGGATGTCATAGCCAAAATGACGTCCCGCCGTTTGACATCTTTGc > 1:1256921/1‑140 (MQ=255) tGCGGCATCATAGGCATTTTTTAAAAGCTCGAAATCTGCGCAAGGCGCAAAATCAATACTTCCGAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCAAAATGACGTCCCGCACTTTGACATCTTTGc > 1:2429852/1‑140 (MQ=255) tGCGGCATCATAGGCATTTTTTAAAAGCTCGAAATCTGCGCAAGGCGCAAAATCAATACTTCCGAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCAAAATGACGTCCCGCACTTTGACATCTTTGc > 1:1125883/1‑140 (MQ=255) tGCGGCATCATAGGCATTTTTTAAAAGCTCGAAATCTGCGCAAGGCGCAAAATCAATACTTCCGAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCAAAATGACGTCCCGCACTTTGACATCTTTGc > 1:3657007/1‑140 (MQ=255) tGCGGCATCATAGGCATTTTTTAAAAGCTCGAAATCTGCGCAAGGCGCAAAATCAATACTTCCGAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCAAAATGACGTCCCGCACTTTGACATCTTTGc > 1:284657/1‑140 (MQ=255) tGCGGCATCATAGGCATTTTTTAAAAGCTCGAAATCTGCGCAAGGCGCAAAATCAATACTTCCGAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCAAAATGACGTCCCGCACTTTGACATCTTTGc > 2:4918589/1‑140 (MQ=255) tGCGGCATCATAGGCATTTTTTAAAAGCTCGAAATCTGCGCAAGGCGCAAAATCAATACTTCCGAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCAAAATGACGTCCCGCACTTTGACATCTTTGc > 1:1887877/1‑140 (MQ=255) tGCGGCATCATAGGCATTTTTTAAAAGCTCGAAATCTGCGCAAGGCGCAAAATCAATACTTCCGAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCAAAATGACGTCCCGCACTTTGACATCTTTGc > 1:1655261/1‑140 (MQ=255) tGCGGCATCATAGGCATTTTTTAAAAGCTCGAAATCTGCGCAAGGCGCAAAATCAATACTTCCGAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCAAAATGACGTCCCGCACTTTGACATCTTTGc > 1:1438322/1‑140 (MQ=255) tGCGGCATCATAGGCATTTTTTAAAAGCTCGAAATCTGCGCAAGGCGCAAAATCAATACTTCCGAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCAAAATGACGTCCCGCACTTTGACATCTTTGc > 1:691581/1‑140 (MQ=255) tGCGGCATCATAGGCATTTTTTAAAAGCTCGAAATCTGCGCAAGGCGCAAAATCAATACTTCCGAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCAAAATGACGTCCCGCACTTTGACATCTTTGc > 2:161406/1‑140 (MQ=255) tGCGGCATCATAGGCATTTTTTAAAAGCTCGAAATCTGCGCAAGGCGCAAAATCAATACTTCCGAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCAAAATGACGTCCCGCACTATGACATCTTTGc > 1:4331901/1‑140 (MQ=255) tGCGGCATCATAGGCATTTTTTAAAAGCTCGAAATCTGCGCAAGGCGCAAAATCAATACTTCCGAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCAAAATGACGTCCAGCTCTTTGACATCTTTGc > 2:3118027/1‑140 (MQ=255) catAGGCATTTTTTAAAAGCTCGAAATCTGCGCAAGGCGCAAAATCAATACTTCCGAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCAAAATGACGTCCCGCACTTTGACATCTTTGCGGATAgcg > 1:4688186/1‑140 (MQ=255) catAGGCATTTTTTAAAAGCTCGAAATCTGCGCAAGGCGCAAAATCAATACTTCCGAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCAAAATGACGTCCCGCACTTTGACATCTTTGCGGATAgcg > 1:3177068/1‑140 (MQ=255) aGGCATTTTTTAAAAGCACGAAAGAGGCGCACGGCGCAAAATCAATACTCCCGACAGCGACTCTGGTCATTTGTGAATCAGTTGAGGATGTCATAGCCAAAATGACGTCCCGCACTTTGACATCTTTGCGGATAGcgccg < 2:2093439/140‑1 (MQ=255) aGGAATTTTTTAAAAGCTCGAAATCTGCGCAAGGCGCAAAATCAATCCTTCCGAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCAAAATGACGTCCCGCACTTTGACATCTTTGCGGATAGcgccg < 2:3349459/140‑1 (MQ=255) gatttttttAAAAGCTCTAAATCTGCGCAAGGCGAAAAATAAATACTGCCGAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCAAAATGACGTCCCGCACTTTGACATCTTTGCGGATAGCGCCGCa < 1:2908659/137‑1 (MQ=255) gaaTTTTTTAAAAGCTCGAAATCTGCGAATGGCGCAAAATCACTACTTCCGAACGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCAAAATGACGTCCCGCACTTTGACATCTTTGCGGATAGCGCCGCa < 2:1001599/138‑1 (MQ=255) gCATTTTTTAAAAGCTCGAAATCTGCGCAAGGCGCAAAATCAATACTTCCGAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCAAAATGACGTCCCGCACTTTGACATCTTTGCGGATAGCGCCGCa < 2:3137550/140‑1 (MQ=255) gCATTTTTTAAAAGCTCGAAATCTGCGCAAGGCGCAAAATCAATACTTCCGAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCAAAATGACGTCCCGCACTTTGACATCTTTGCGGATAGCGCCGCa < 1:3500519/140‑1 (MQ=255) gCATTTTTTAAAAGCTCGAAATCTGCGAAAGGCGCAAAATCAATCCTACCCAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCAAAATGACGTCCCGCACTTTGACATCTTTGCGGATAGCGCCGCa < 1:2149247/140‑1 (MQ=255) ccATTTTTTAAAAGATCGAAATCTGCGCAAGGCGAAAAATCACTACTTCCCAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCAAAATGACGTCCCGCACTTTGACATCTTTGCGGATAGCGCCGCa < 2:3238902/139‑1 (MQ=255) aTTTTTTAAAAGCTCGAAATCTGCGCAAGGCGCAAAATCAATACTTCCGAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATTTCATAGCCAAAATGACGTCCCGCACTTTGACATCTTTTCGGATAGCGCCGCAAg > 2:359322/1‑140 (MQ=255) tttttAAAAGCTCGAAATCTGCGCAAGGCGCAAAATCAATACTTCCGAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCAAAATGACGTCCCGCACTTTGACATCTTTGCGGATAGCGCCGCAAGaa > 1:2388435/1‑140 (MQ=255) aaacGCTCGAAATCTGCGCACGGCGAAAAATCAATACTTCCGAACGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCAAAATGACGTCCCGCACTTTGACATCTTTGCGGATAGCGCCGCAAGAACCTAc < 2:683294/140‑1 (MQ=255) cGAAATCTGCGCAAGGCGCAAAATCAATACTTCCGAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCAAAATGACGTCCCGCACTTTGACATCTTTGCGGATAGCGCCGCAAGAACCTACTCttatt > 1:1411761/1‑140 (MQ=255) agAAATCTTCGAAAGGCGAAAAATCAATACTTCCGAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCAAAATGACGTCCCGCACTTTGACATCTTTGCGGATAGCGCCGCAAGAACCTACTCttatt < 2:1384574/139‑1 (MQ=255) gcACGGCGCAAAATCAATCCTGCCGAACGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCAAAATGACGTCCCGCACTTTGACATCTTTGCGGATAGCGCCGCAAGAACCTACTCTTATTAGATTTTGca < 2:2579924/140‑1 (MQ=255) gcAAGGCGCAAAATCAATACTTCCCAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCAAAATGACGTCCCGCACTTTGACATCTTTGCGGATAGCGCCGCAAGAACCTACTCTTATTAGATTTTGca < 1:1943023/140‑1 (MQ=255) gcAAGGCGAAAAATCAATACTTCCCAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCAAAATGACGTCCCGCACTTTGACATCTTTGCGGATAGCGCCGCAAGAACCTACTCTTATTAGATTTTGca < 2:2397831/140‑1 (MQ=255) gaaaGGCGCAAAATCAATAATTCCTAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCAAAATGACGTCCCGCACTTTGACATCTTTGCGGATAGCGCCGCAAGAACCTACTCTTATTAGATTTTGca < 2:307182/138‑1 (MQ=255) aactCAATACTCCCGAACGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCAAAATGACGTCCCGCACTTTGACATCTTTGCGGATAGCGCCGCAAGAACCTACTCTTATTAGATTTTGCACATCGTAGCt < 1:1737311/137‑1 (MQ=255) aaaaCAACACTCCCGAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCAAAATGACGTCCCGCACTTTGACATCTTTGCGGATAGCGCCGCAAGAACCTACTCTTATTAGATTTTGCACATCGTAGCt < 2:1250778/140‑1 (MQ=255) aaaTCACCACTCCCCAACGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCAAAATGACGTCCCGCACTTTGACATCTTTGCGGATAGCGCCGCAAGAACCTACTCTTATTAGATTTTGCACATCGTAGCt < 1:2687149/140‑1 (MQ=255) aaaTCAATACTTCCGAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCAAAATGACGTCCCGCACTTTGACATCTTTGCGGATAGCGCCGCAAGAACCTACTCTTATTAGATTTTGCACATCGTAGCt < 2:1688044/140‑1 (MQ=255) aataaataCTTCCGAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCAAAATGACGTCCCGCACTTTGACATCTTTGCGGATAGCGCCGCAAGAACCTACTCTTATTAGATTTTGCACATCGTAGCtt < 2:4540646/140‑1 (MQ=255) aaTACTTCCGAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCAAAATGACGTCCCGCACTTTGACATCTTTGCGGATAGCGCCGCAAGAACCTACTCTTATTAGATTTTGCACATCGTAGCTTTGaa < 1:4438823/140‑1 (MQ=255) aTACTTCCGAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCAAAATGACGTCCCGCACTTTGACATCTTTGCGGATAGCGCCGCAAGAACCTACTCTTATTAGATTTTGCACATCGTAGCTTTGaat > 2:1410426/1‑140 (MQ=255) ccGAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCAAAATGACGTCCCGCACTTTGACATCTTTGCGGATAGCGCCGCAAGAACCTACTCTTATTAGATTTTGCACATCGTAGCTTTGAATTAattc > 1:3852275/1‑140 (MQ=255) aaaGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCAAAATGACGTCCCGCACTTTGACATCTTTGCGGATAGCGCCGCAAGAACCTACTCTTATTAGATTTTGCACATCGTAGCTTTGAATTAattcatt < 2:4643348/140‑1 (MQ=255) | GCGAATCGTCGTTGTAGAACTGATCAGCTGTAAATACGCTTCCTACCGTCACCGG‑CACGCCTTTATCCTTTGCGGCATCATAGGCATTTTTTAAAAGCTCGAAATCTGCGCAAGGCGCAAAATCAATACTTCCGAAAGCGACTCTGTTCATTTGTGAATCAGTTGAGGATGTCATAGCCAAAATGACGTCCCGCACTTTGACATCTTTGCGGATAGCGCCGCAAGAACCTACTCTTATTAGATTTTGCACATCGTAGCTTTGAATTAATTCATT > NZ_CP034943/2139344‑2139617 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |