| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 3,268,725 | C→A | 9.4% | intergenic (+73/+137) | catR → / ← EO946_RS16920 | catDE operon transcriptional regulator CatR/HAMP domain‑containing histidine kinase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 3,268,725 | 0 | C | A | 9.4% | 721.8 / 18.9 | 282 | intergenic (+73/+137) | catR/EO946_RS16920 | catDE operon transcriptional regulator CatR/HAMP domain‑containing histidine kinase |
| Reads supporting (aligned to +/- strand): ref base C (40/205); new base A (35/2); total (75/207) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.26e-21 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 292 total aligned reads displayed.
GGCCCCCATCTTGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACATTTAAAATAACCCACGTCCAGATAGGACAT > NZ_CP034943/3268586‑3268856 | ggCCCGCATCTTGGGTGATATTTCTAAATGGGCGACGGATTTGATTGACCCTTCGTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAATGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAAc < 2:3478240/140‑1 (MQ=255)ggCCCCCATCTTGGTTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAAc < 1:851602/140‑1 (MQ=255) ccccATCTTGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAACGAc > 2:325088/1‑140 (MQ=255) ccATCTTGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTTTTTTTA‑ATTTTGCAGGT‑AAAAAAAGACtt > 1:3993086/1‑140 (MQ=255) cATCTTGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAACGACTtc > 2:1689239/1‑140 (MQ=255) tCTTGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAACGACTtctc < 1:1837811/140‑1 (MQ=255) tCTTGGGTGAGATTTCTAAAGGGGCGACGGATTGGATTGACCCTTACTTTCTTTACTAATTGCTAAACCGGTTCTGATCTAAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAACGACTtctc < 1:2139847/140‑1 (MQ=255) tcggagagaTTTCTCACTGGGCGACGCATTCGATTGACCCTTCATTTATTGAGTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGACAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAACGACTTCTCAGc < 2:3075055/135‑1 (MQ=255) tGGGTGATATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAACGACTTCTCAGc < 2:63384/140‑1 (MQ=255) tGGGTGATATTTCTAAATGGGCGACGGATTGGATTGACCATTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGAGAGAAAAGATCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAACGACCTCTCAGc < 1:4766795/140‑1 (MQ=255) tGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTTATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAACGACTTCTCAGc < 2:3684860/140‑1 (MQ=255) tGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTG‑ATTTGCGAGGG‑AAAAAACGACTtctaatc > 2:4720545/1‑136 (MQ=255) tGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAACGACTTCTCAGc < 2:1260947/140‑1 (MQ=255) tGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAACGACTTCTCAGc < 2:4071367/140‑1 (MQ=255) tGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAACGACTTCTCAGc < 2:3953931/140‑1 (MQ=255) tGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAACGACTTCTCAGc < 2:4875017/140‑1 (MQ=255) tGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAACGACTTCTCAGc < 2:3292900/140‑1 (MQ=255) tGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAACGACTTCTCAGc < 2:4457536/140‑1 (MQ=255) tGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAACGACTTCTCAGc < 2:252072/140‑1 (MQ=255) tGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAACGACTTCTCAGc < 2:2343550/140‑1 (MQ=255) tGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGCGGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAACGACTTCTCAGc < 1:1475253/140‑1 (MQ=255) ggggTGATATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTAATTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGTT‑AAAAAACGACTTCTCAGc < 1:141847/139‑1 (MQ=255) cgcgTGAGATTTCTAACTGGGCGACGGATTGGATTGACCCTTCCGTTCTTCACTAATTCCTAAAACGGTTCTGATCTAAAAGGCGAGAAAAGAGCCGTTTTTTTATTTGTC‑ATTTGCCAGGT‑CAAAAACGACTTCTCAGc < 2:1480930/137‑1 (MQ=255) gggTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTTTTTTTG‑ATTTGCCCTGT‑AAAAAACGACTTGTGAGcc > 2:4117554/1‑140 (MQ=255) gggTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAACGACTTCTCAGcc < 1:3050677/140‑1 (MQ=255) gggTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCGGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTA‑ATTTGCCAGGT‑AAAAAAAGACttataagac > 2:206968/1‑133 (MQ=255) ggTGATATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACGAATTGCTAACACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAACGACTTCTCAGCCg < 2:772517/140‑1 (MQ=255) ggTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTTACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAACGACTTCTCAGCCg < 2:1396594/140‑1 (MQ=255) ggTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTTATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAACGACTTCTCAGCCg < 2:883716/140‑1 (MQ=255) ggTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTTCCAGGT‑AAAAAAAGACTTCTCAGCCg > 2:2392088/1‑140 (MQ=255) ggTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAACGACTTCTCAGCCg < 1:4233134/140‑1 (MQ=255) ggTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAACGACTTCTCAGCCg < 2:4069916/140‑1 (MQ=255) ggTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAACGACGTCTCAGCCg < 2:1763358/140‑1 (MQ=255) gTGAGATTTATAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAACGACTTCTCAGCCGa < 1:3523568/140‑1 (MQ=255) tGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAACGACTTCTCAGCCGat < 1:1039226/140‑1 (MQ=255) gagaTTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTTACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAACGACTTCTCAGCCGata < 1:1370037/140‑1 (MQ=255) gagaTTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAACGACTTCTCAGCCGata < 2:2470921/140‑1 (MQ=255) gagaTTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAACGACTTCTCAGCCGata < 1:1764462/140‑1 (MQ=255) gagaTTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAACGACTTCTCAGCCGata < 2:2194797/140‑1 (MQ=255) gagaTTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAACGACTTCTCAGCCGata < 1:958027/140‑1 (MQ=255) agaTTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTG‑ATTTTGCAGGT‑AAAAAACGACTTCTCAGCCGatat > 2:352915/1‑140 (MQ=255) agaTTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTTCCATGT‑AAAAAACGACTTCTAAGCCGatat > 2:3825918/1‑140 (MQ=255) agaTTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTTCCAGGT‑AAAAAAAGCCTTATCAGCCGctat > 1:4061780/1‑140 (MQ=255) agaTTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAACGACTTCTCAGCCGatat > 2:3274110/1‑140 (MQ=255) agaTTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTAATTTTC‑ATTTTCGAGGG‑AAAAAAAGACATCTCcgacgaaag > 1:222435/1‑137 (MQ=255) taTTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCGTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAACGACTTCTCAGCCGatata < 2:3374625/139‑1 (MQ=255) gaTTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAACGACTTCTCAGCCGatata < 1:4921357/140‑1 (MQ=255) gaTTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAACGACTTCTCAGCCGatata < 2:2842513/140‑1 (MQ=255) gaTTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAACGACTTCTCAGCCGatata < 2:2791233/140‑1 (MQ=255) gaTTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAACGACTTCTCAGCCGatata < 1:448121/140‑1 (MQ=255) gaTTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAACGACTTCTCAGCCGatata < 1:2810472/140‑1 (MQ=255) aTTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTGTTTTTAATTTTA‑ATTTTCCAAGT‑AAAAAAAGACTTCTAAGCCGctatat > 1:1124405/1‑140 (MQ=255) ttCTAAATGGGCGACTGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAACGACTTCTCAGCCGATATAtag < 2:3244930/140‑1 (MQ=255) cTAAATGGGCGACGTATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAACGACTTCTCAGCCGATATAtagta < 2:3993188/140‑1 (MQ=255) aaTGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAACGACTTCTCAGCCGATATATAGTAGaa < 1:3255854/140‑1 (MQ=255) aTGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAACGACTTCTCAGCCGATATATAGTAGAAc < 1:2493383/140‑1 (MQ=255) tGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAACGACTTCTCAGCCGATATATAGTAGAAcc < 1:3512515/140‑1 (MQ=255) gattgACCCTTCCTTTCTTGACTAATTGCTAAAATGGTTCTGATCTCAAAGACGAGAAAAGAACCG‑TTTTTTATTTT‑‑‑‑‑‑‑‑CCAGGTGAAAAAAAGATATCTCAGCCGATATATAGTACATCCACACATTACGTTTTTaaagga < 2:5175173/140‑6 (MQ=255) aCCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGGG‑AAAAAACGACTTCAAAGCCGATATATAGTAGAACCCCACCTTGCGGTTTTAGcc > 2:580250/1‑140 (MQ=255) cccTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTT‑ATTTTGCGGGT‑AAAAAAATAATTCTCAGCCGATATATATTTTAAACCCACAATTGGttttttgagg > 1:2668741/1‑135 (MQ=255) cccTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCg < 1:4540079/140‑1 (MQ=255) cccTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCACAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGTT‑AAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCg < 1:4831933/140‑1 (MQ=255) cccGTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCg < 1:292385/140‑1 (MQ=255) tccttTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTGTTTATCCgaaga > 2:2754034/1‑140 (MQ=255) tccttTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAACGACTTAGCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCgaaga > 2:1196505/1‑140 (MQ=255) tccttTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTA‑ATTTTCCAGGT‑AAAAAACGACTTATCATCGGATATATAGTATAAACCCACATTTCGTTTTTAGCCgaaga > 2:4417359/1‑140 (MQ=255) tccttTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTGGTTTTATTTTTA‑ATTTGCCCGGT‑AAAAAACGAATTCTCAGCCGAGATATATTAGAACCCCACCTTGCGTTTTTTGGagaaga > 1:4434099/1‑140 (MQ=255) ccttTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAAAGACTTCACCGCCGATATATAGTAGAAACCCACATTTCGTTTTTAGCCgaacaa > 2:2900580/1‑140 (MQ=255) ccttTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTGTTTTTATTTTTC‑ATTTTCCCGGT‑AAAAAACGACTTCTAAGCCGATAAATAGTAGAACCCCCCATTGCGTTTTTATCCgaagaa > 2:2227086/1‑140 (MQ=255) gACTAATTTCTAAAACGGTACTGATCTCACAGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAACGACTTCTCAGCCGATAGATAGTAGAACCCCACAGGGCGTTTTTAGCCGAAGAATTTGagca < 2:4162979/140‑1 (MQ=255) ttGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCCGGT‑AAAAAACGACTTCTCAGCCGATATATAGTAGAAACCCCCATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGc > 2:186700/1‑140 (MQ=255) gggtCTGACCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCtt < 2:1803076/137‑1 (MQ=255) gTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAACGACTTCTCAGCCGATATATAGTATAACCCCACATTGCGTTTTTTGCCGAAGAATTTGAGCAGCTGGCGTAAGAGCTTc > 2:1137696/1‑140 (MQ=255) tgcTGATCTCAAACGCGAGAAAAGAGCCGTTTTTTTATTTGTC‑ATTTGCCAGGT‑AAAAAACGACTTCTCAGCCGATAGATTGTAGAACCCCACACTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAACGAGCTTCa < 2:1976952/138‑1 (MQ=255) tCTTATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCAt < 2:5144064/140‑1 (MQ=255) tCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCAt < 1:428785/140‑1 (MQ=255) tCTGATCTCAAAGGCGAGAAAAGAGCCGTGTTTTTATTTTTG‑ATTTTCCCGGT‑AAAAAAACACTTCTCAGCCGATATTTAGTAGAACCCCACCTTGCGTTTTTAGGCGAACAATTTTTGCAGCTGGCGCAAGAGCTTCAt > 1:3630635/1‑140 (MQ=255) tGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATga < 1:466252/140‑1 (MQ=255) tGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATga < 1:2508184/140‑1 (MQ=255) ctcAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGagaag < 1:5208888/140‑1 (MQ=255) tcAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGagaaga < 1:1786956/140‑1 (MQ=255) aaaGGCGAGAAAAGAGCCGTTTTTTTATTTTTCAATTTGCC‑GGT‑AAAAAACGACTTGTGAGCCGATATATAGTAGAAACCCACAATGCGTTTTTAGGCGAAGAATATGGGCCGCTGGCGAAAGAGGGTCCTGAGCAGATg > 1:5080143/1‑140 (MQ=255) aaaGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATg > 2:1064840/1‑140 (MQ=255) taaaaGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAACGAATTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGtt < 1:2480397/139‑1 (MQ=255) gaAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGtt < 1:2574333/140‑1 (MQ=255) caaaaGAGCCGTTTTTTTATTTTTC‑ATTTGCCCGGT‑AAAAAACGACTTCTCAGCCGATAGATAGTACAACCCCACATTTCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGtt < 1:236834/139‑1 (MQ=255) aaaaGAGCCTTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAATCGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGATGATGGATCAGTTc < 2:4257182/140‑1 (MQ=255) agCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAAATTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACAtt < 2:359407/140‑1 (MQ=255) ccGTTTTTTTATTTTTC‑ATTTTCCAGGT‑AAAAAACGAATTCTCAGCCGATATATATTAGAACCCCACATTTCGTTTTTATCCGAAGAATTTTAGCAGCTGGCGAAAGAGCTTAATGAGAAGATTGATAAGTTCAAATTTa > 2:1443393/1‑140 (MQ=255) ttATTTTTC‑ATTTGCCAGGT‑AAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCCCCTTGGGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATTTATCAGTTCACATTTAAAATAAcc < 1:739193/140‑1 (MQ=255) ttATTTTTC‑ATTTGCCAGGT‑AAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACATTTAAAATAAcc < 1:3347053/140‑1 (MQ=255) ttATTTTTC‑ATTTGCCAGGT‑AAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACATTTAAAATAAcc < 1:3576221/140‑1 (MQ=255) ttATTTTTC‑ATTTGCCAGGT‑AAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACATTTAAAATAAcc < 1:1641967/140‑1 (MQ=255) ttATTTTTC‑ATTTGCCAGGA‑AAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACATTTAAAATAAcc < 1:4117554/140‑1 (MQ=255) ttATTTTTA‑ATTTGCCAGGT‑AAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACATTTAAAATAAcc < 1:590283/140‑1 (MQ=255) aTTTTTC‑ATTTGCCAGGT‑AAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACATTTAAAATAACCCa < 2:262602/140‑1 (MQ=255) aTTTTTC‑ATTTGCAATGT‑AAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACATTTAAAATAACCCa < 2:2974400/140‑1 (MQ=255) ttC‑ATTTGCCAGGT‑AAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACATTTAAAATAACCCACGTc < 2:1907098/140‑1 (MQ=255) tttGCCAGGT‑AAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACATTTAAAATAACCCACGTCCAGa < 1:3768767/140‑1 (MQ=255) tttGCCAGGT‑AAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACATTTAAAATAACCCACGTCCAGa < 1:1226622/140‑1 (MQ=255) | GGCCCCCATCTTGGGTGAGATTTCTAAATGGGCGACGGATTGGATTGACCCTTCCTTTCTTGACTAATTGCTAAAACGGTTCTGATCTCAAAGGCGAGAAAAGAGCCGTTTTTTTATTTTTC‑ATTTGCCAGGT‑AAAAAACGACTTCTCAGCCGATATATAGTAGAACCCCACATTGCGTTTTTAGCCGAAGAATTTGAGCAGCTGGCGAAAGAGCTTCATGAGAAGATGGATCAGTTCACATTTAAAATAACCCACGTCCAGATAGGACAT > NZ_CP034943/3268586‑3268856 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |