| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 3,562,015 | A→C | 12.5% | intergenic (‑661/‑137) | EO946_RS18300 ← / → EO946_RS21105 | response regulator/HAMP domain‑containing histidine kinase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 3,562,015 | 0 | A | C | 12.5% | 561.9 / 7.7 | 261 | intergenic (‑661/‑137) | EO946_RS18300/EO946_RS21105 | response regulator/HAMP domain‑containing histidine kinase |
| Reads supporting (aligned to +/- strand): ref base A (125/82); new base C (4/43); total (129/132) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.25e-11 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 262 total aligned reads displayed.
ATCAGCACGTCGTTTATTTACAGTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCA‑TATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAATTTCCTTTCTTAATGATTCAATC > NZ_CP034943/3561879‑3562151 | aTCAGCACGTCGTTTATTTACAGTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCA‑TATACGAGCTTTTTTACGCTTCACAAggg < 1:932952/140‑1 (MQ=255)aTCAGCACGTCGTTTATTTACAGTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCA‑TATACGAGCTTTTTTACGCTTCACAAggg < 2:1295199/140‑1 (MQ=255) tCAGCACGTCGTTTATTTACAGTGCAAATCGCATATATTTTAATGGCCAAGTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCA‑TATACGAGCTTTTTTACGCTTCACAAGGGt < 2:1322838/140‑1 (MQ=255) aCGTCGTTTATTTACAGTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCA‑TATACGAGCTTTTTTACGCTTCACAAGGGTGACaa < 1:1537595/140‑1 (MQ=255) gtcgtTTATTTACAGTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTGTATAGCGCAAATCAGACCA‑TATACGAGCTTTTTTACGCTTAACAAGGGTGACAATg > 2:3793167/1‑140 (MQ=255) tcgtTTATTTACAGTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCA‑TATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGa < 1:2946802/140‑1 (MQ=255) tcgtTTATTTACAGTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCA‑TATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGa < 1:3573975/140‑1 (MQ=255) cgtTTATTTACAGTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCA‑TATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGaa > 1:614288/1‑140 (MQ=255) cgtTTATTTACAGTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCA‑TATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGaa > 1:3710686/1‑140 (MQ=255) gtTTATTTACAGTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCA‑TATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAAc < 1:1240239/140‑1 (MQ=255) ttatttaCAGTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCA‑TATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACtt > 2:1199539/1‑140 (MQ=255) cAGTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCA‑TATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTAc < 1:2305636/140‑1 (MQ=255) gTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCA‑TATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACaa > 2:1918385/1‑140 (MQ=255) gTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCA‑TATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACaa > 2:3219742/1‑140 (MQ=255) gTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCA‑TATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACaa > 1:34744/1‑140 (MQ=255) gTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCA‑TATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACaa > 2:2394192/1‑140 (MQ=255) gTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCA‑TATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACaa > 1:3900441/1‑140 (MQ=255) gTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCA‑TATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACaa > 1:3952681/1‑140 (MQ=255) gTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCA‑TATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACaa > 1:5095272/1‑140 (MQ=255) gTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCA‑TATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACaa > 1:4890189/1‑140 (MQ=255) gTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCA‑TATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACaa > 1:516453/1‑140 (MQ=255) gTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCA‑TATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACaa > 1:1176423/1‑140 (MQ=255) aTCGCATCTATTTTAATGGCCAATTAATAGGACAACGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCA‑TATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCa < 2:3116752/140‑1 (MQ=255) cTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCA‑TATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTAAAATTTTCAAACttat > 2:4221716/1‑138 (MQ=255) agtcacAATTAATAGCACAAACCGCACGCCCTAAAAATAAACGTTATTTTATACCCCAAACCCCCCCA‑TATACGCGCTTTTTTACGCTGCACAAGGGTGACAATGAACTGGTGGTCAATTTTTCAAACTACGGAAAAACg < 1:1441853/135‑1 (MQ=255) aTGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCA‑TATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACg > 1:4469909/1‑140 (MQ=255) aTGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCA‑TATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACg > 1:1988575/1‑140 (MQ=255) tGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTTATTTTATACCGCAAAACACACCA‑TATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGc < 2:449470/140‑1 (MQ=255) tGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCA‑TATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGc < 2:3631392/140‑1 (MQ=255) aTAGGACAAAGCGGACGCCCTAAAAATAAACGTGATTTTATAGCGCAAAACAGACCA‑TATACGAGCTTTTTTACGCTTCACACGGGTGACATTGACCTTGTGGTACAATTTACAAACTTCGGAAAAACGCCGGGGTgggg < 2:476959/140‑1 (MQ=255) aTAGGACAAAGCGGACGCCATTCAAATAACCCTGATTTTATAGCGCAAAACAGACCA‑TAGACGAGCTTTTTTCCGCTTCACAAGGGTGACACTGAACTTGTGGTACAATTTACAAACTTCGGAAAAACGCCGGGGTgggg < 2:4612702/140‑1 (MQ=255) aGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGAAAAACAGACCA‑TATACGAGCTATTTTACGGTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAAGTTCGTAAAAGCGCCCGGGTGGGGaa > 2:4869942/1‑140 (MQ=255) aaaGCGTAAGCCCTTCAAATAAACCTTTTTTTATAGCGAAAAACAGACCA‑TTTCCGAGCTTTTTTACGCTTCACACGGGTGAAATTGAAGTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCa < 2:2876365/140‑1 (MQ=255) aaaGCGCAAGCCCTTCAAATTAACCAGATTTTATAGCCCCAAACAGACCA‑GATACGAGCTTTTTTACGCTTCACACGGGTGACACTGAACTTGTGGTACACTGTTCAAACGTCGGACATACGCCGGGTTGTGGCATCGCa > 2:3929634/1‑140 (MQ=255) aaaGCGCAACCCATAAAAAAACACCTTATTTAATAGCCAAAAACACACCA‑TATACGAGCTTTTTTACGCTTCAAACGGGTGACAATGAACTTGTGGTAAAATTTACAAACTTCGCAAAAACGCCGGGGTGGGGAATCGCa < 1:2826234/140‑1 (MQ=255) aGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCA‑TATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCaaa > 2:4804056/1‑140 (MQ=255) aGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCA‑TATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCaaa > 2:375532/1‑140 (MQ=255) aGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCA‑TATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCaaa > 1:4452740/1‑140 (MQ=255) aGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCA‑TATACGAGATTTTTTACGCTTCACAAGGGTGACACTCAACTTGTGGTACAATTTTCAAAATTCGTAAACACGAGGGCGTGGGGAATCGCaaa > 1:4559114/1‑140 (MQ=255) cGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCA‑TATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGc > 1:3541276/1‑140 (MQ=255) aaGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCA‑TATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGa > 1:2671511/1‑140 (MQ=255) aaGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCA‑TATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGa > 1:3028494/1‑140 (MQ=255) cTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCA‑TATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACt > 1:1714297/1‑140 (MQ=255) cTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCA‑TATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACt > 2:2041141/1‑140 (MQ=255) cTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCA‑TATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACt > 1:3390320/1‑140 (MQ=255) tCAAATAAACCTGATTTTATAGCGCAAAACAGACCA‑TATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAAc < 1:1665206/76‑1 (MQ=255) tCAAATAAACCTGATTTTATAGCGCAAAACAGACCA‑TATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACttt > 1:4923058/1‑140 (MQ=255) aaaTAAACCTGATTTTATAGCGAAAAACACACCA‑AATCCGAGCTTTTTAACGCTTCACACGGGTGACAATGAACTTGTGTTAAAATTTCCAAAATTCGCAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTg < 1:1126334/140‑1 (MQ=255) aaaaCCTTATTTTATAGCGAAAAAACCCACA‑TATCCGAGCTTTTTGACGCTACACACGGGTGACAATCAACTTGGGTTACAATTTTCAAAGTTGGCAAAAACGCCGGGGTGGGGAATCGCAACGCCGATTACTTTTGGaa < 1:2103831/139‑1 (MQ=255) acccTTATTTTATAGCTCAAAACAGACAA‑TATACGAGATTTTTTCCGGTTCCACAGGTTGAAACTCAAGTTGTGGTAAAATTTACAAACTTCGTAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACg < 1:3881638/138‑1 (MQ=255) aaccataTTTTATAGCCCAAAACACACAA‑TACCCGAGCTTTTTCACGATTCACCCGGGTTACAATGAAATTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACg < 1:1046748/134‑1 (MQ=255) aacattaTTTTATAGCGAAAACCAGACAA‑TATACGAGCTTTTTTACGCTTCACAAGGGTTAAAATTAACTTGTGGTACAATTTACAAACTACGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACg < 1:3771677/134‑1 (MQ=255) aacattaTTTTATAGCGAAAAACACACAA‑TATACGAGCTTTTTTACGCTTCACACGGGTGAAAATGAACTTGTGGTACAATTTTAAAAATTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACg < 1:1304430/134‑1 (MQ=255) aaCCTTATTTTATCGCCCAAAACCCACCA‑TATACCAGCTTTTTTACGCTTCACACGGGTTACAATGAAGTTGTGTTACAATTTTCAAACTTCGGAAACACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACg < 1:749969/140‑1 (MQ=255) aaCCTTATTTTATAGCGCAAAACAGACCA‑TATACGAGCTTTTTTACGCTTCACAAGGGTGAAAATCAACTTGTGGTACAATTTTCAAACGTCGCAAACACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACg < 1:4804056/140‑1 (MQ=255) aaCCTTATTTTATAGCCAAAAACACACAA‑TATACGAGCTTTTTTCCGATTCACACGGGTGAAAATGAAGTTGTGGTACAATTTTCAAACTGCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACg < 1:1025655/140‑1 (MQ=255) aaCCTTATTTTATACCGAAAACCACCCAA‑TATACGAGTTTTTTTACGCTTCACACGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACg < 1:4180742/140‑1 (MQ=255) aaCCTGATTTTATAGCGCAAAACAGCCCA‑TATACGAGCTTTTTTACGCTTCACAAGGGTGACAATTAACTTGTGGTACAATTTTAAAAATTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACg < 2:926981/140‑1 (MQ=255) aaCCTGATTTTATAGCGCAAAACAGACCA‑TATACGAGCTTTTTTACGCTTCACACGGGTGAAAATGAACTTGGGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACg < 1:1298948/140‑1 (MQ=255) aaCCTGATTTTATAGCGCAAAACACACAA‑TATACGAGATTTTTTACGCTTCACAAGGGTGACAATCAACTTGTGTTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACg < 2:2206796/140‑1 (MQ=255) aaCCTGATTTTATAGCCCAAAACCCACCA‑TATACCAGCTTTTGTACGCTTCACACGGGTGACAATGAACGTGTGGTACAATTTTCAAACTTCGTAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACg < 1:917112/140‑1 (MQ=255) aaCCTGATTTTATAGC‑CAAAACAACCCATTAAACTAGATTTTTGCCGCTTCAAACGGGTGAAATTTACCTTGTGGTAAAATTTTCAAACTGGGTAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACg < 1:1771606/140‑1 (MQ=255) aaCCGGATTTTATAGCCCAAACCCGCCCA‑TATACGAGGTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGTTACAATTTACAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAACCCGATTACTTTTGGAACg < 1:4000524/140‑1 (MQ=255) aCCTGATTTTATAGCGCAAAACAGACCA‑TATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGc > 2:1240923/1‑140 (MQ=255) ccTGTTTTTATCGCCCAAAACCCACCA‑TACACGAGCTTTTTTACGCTACACACGGGTGAAAATGAACTTGTGGAACAATTTCCAAACGTCGCAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCa < 1:2568719/140‑1 (MQ=255) tGATTTTATAGCGAAAAACAGACCA‑TCTACGAGTTTTTTTACGATTAACCTGGGTGACATTTAACTTGTGTTAAAATTTTAAAACTTCGTAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAgg < 1:5211396/140‑1 (MQ=255) aTTTTATAGCGCAAAACAGACCA‑TATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGAt > 1:4678991/1‑140 (MQ=255) tttATAGCGCAAAACAGACCA‑TATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATaa < 2:2596227/140‑1 (MQ=255) tttATAGCGCAAAACACACCA‑TATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATaa < 2:6672/140‑1 (MQ=255) tttATAGCGAAAAACCGACCA‑TATACGATCTTTTTTACGCTTAACAAGGGTGACAATGACCTTGTGTTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATaa < 2:3328463/140‑1 (MQ=255) gcAAAACAGACCA‑TATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATAtttc > 2:3822497/1‑138 (MQ=255) aaaaCAGACCA‑TATACGAGATTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCga < 2:5085840/140‑1 (MQ=255) aaCAGACCA‑TATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCCGGATAACATATTGCgaga > 2:1745946/1‑140 (MQ=255) aGACCA‑TATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGaa < 2:2338097/140‑1 (MQ=255) aCCA‑TATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAATACGCGGGGGGGGGGAATCGCAAAGCCGATTACTTGTGGAACGCAGGATAACATATTGCGAGAGAACa > 1:3190852/1‑140 (MQ=255) aCCA‑TATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACa > 2:1681231/1‑140 (MQ=255) tataCGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCa < 2:2685490/113‑1 (MQ=255) ataCGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAAtt > 1:2732231/1‑140 (MQ=255) ataCGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAAtt > 1:1865918/1‑140 (MQ=255) tcGAGCTTTTTTACGCTTCACTAGGGTGACAATGAATTTGTTTTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGTGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAATTTc < 2:1089448/139‑1 (MQ=255) aCGAGCTTTTTTACGCTTCACAAGGGGGACAATGAACTTGTGGTACAATTTTCAAACTGCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAATTTc < 2:1861663/140‑1 (MQ=255) aGCTTTTTTACGCTTCACAAGGGTGACAATGAAATTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCTAGAGAACAAAATTTCCtt > 2:2825878/1‑140 (MQ=255) gCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAATTTCCttt > 2:3891947/1‑140 (MQ=255) cTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAATTTCCTTTc > 1:504059/1‑140 (MQ=255) cTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAATTTCCTTTc > 2:3236638/1‑140 (MQ=255) tttttACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAATTTCCTTTCtt > 1:3629602/1‑140 (MQ=255) ttttACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAATTTCCTTTCTTa > 1:4144413/1‑140 (MQ=255) ttttACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAATTTCCTTTCTTa > 2:1495167/1‑140 (MQ=255) tttACGCTTCACACGGGTTACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAATTTCCTTTCTTaa < 2:4326545/140‑1 (MQ=255) tttACGCTTCACAAGGGTGACAATTAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAATTTCCTTTCTTaa < 2:1617251/140‑1 (MQ=255) cacaAGGGTGACAATGAACTTTTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAATTTCCTTTCTTAATGATTCAAt < 2:4004784/140‑1 (MQ=255) cacaAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTgggg < 1:2425744/62‑1 (MQ=255) cacaAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTgggg > 2:2425744/1‑62 (MQ=255) cacaAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAATTTCCTTTCTTAATGATTCAAt > 1:2134263/1‑140 (MQ=255) cacaAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAATTTCCTTTCTTAATGATTCAAt < 2:3490858/140‑1 (MQ=255) cacaAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAATTTCCTTTCTTAATGATTCAAt > 1:4337731/1‑140 (MQ=255) acacGGGTGACAATGAACTTGTGGTACAATTTACAAACTTCGGAAACACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAATTTCCTTTCTTAATGATTCAATc < 1:1918385/140‑1 (MQ=255) acaAGGGTGACAATGACGTTGTGGTACACTTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAATTTCCTTTCTTAATGATTCAATc < 2:4124052/140‑1 (MQ=255) acaAGGGTGAAAATGAACTTGTGGTACAATTTACAAACTTGGTAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAATTTCCTTTCTTAATGATTCAATc < 1:2233593/140‑1 (MQ=255) acaAGGGTGAAAATGAAATTGTGTTACAATTTACAAACTTCGCAAACACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAATTTCCTTTCTTAATGATTCAATc < 1:2041141/140‑1 (MQ=255) | ATCAGCACGTCGTTTATTTACAGTGCAAATCGCATCTATTTTAATGGCCAATTAATAGGACAAAGCGGAAGCCCTTCAAATAAACCTGATTTTATAGCGCAAAACAGACCA‑TATACGAGCTTTTTTACGCTTCACAAGGGTGACAATGAACTTGTGGTACAATTTTCAAACTTCGGAAAAACGCCGGGGTGGGGAATCGCAAAGCCGATTACTTTTGGAACGCAGGATAACATATTGCGAGAGAACAAAATTTCCTTTCTTAATGATTCAATC > NZ_CP034943/3561879‑3562151 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |