BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP034943	2,991,236	0	C	G	30.0%	232.9 / 35.3	143	intergenic (+37/‑170)	gbsR/bslA	transcriptional regulator GbsR/biofilm‑surface layer protein BslA
Reads supporting (aligned to +/- strand): ref base C (13/71); new base G (36/0); total (70/73)
Fisher's exact test for biased strand distribution p-value = 4.84e-20
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 145 total aligned reads displayed.

AACTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATT‑ACT‑ACAAATTTGAAAAAT‑ACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCGGGCAGGCCTGAAT  >  NZ_CP034943/2991099‑2991374

aaCTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGTTTTTTTGTTCtt                                                                                                                                             >  2:805419/1‑140 (MQ=255)

aaCTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGTGTtttttttttt                                                                                                                                             >  2:951994/1‑140 (MQ=255)

aaCTGGAAAGCTCGAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTGATACCGAGTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGTTTTTTTTTTAtt                                                                                                                                             >  2:871291/1‑140 (MQ=255)

  cTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGACTCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAC‑ACGCCTGGGAAACCGGGCGTTTTTTTGTTCtttt                                                                                                                                           <  2:934491/140‑1 (MQ=255)

   tGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTATATTTATACCGATTGAAACAACGTAATACAAAA‑ACGCCTGGGAACCCGGGCGTGTTTTGGTTGttttt                                                                                                                                          >  2:2104682/1‑140 (MQ=255)

             tAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGTTTTTTTTTTGTTTTTTATTTAAtaa                                                                                                                                >  2:1947284/1‑138 (MQ=255)

             tAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGTTTTTTTTTTATTTTTTTTTttatt‑a                                                                                                                               >  2:1465984/1‑140 (MQ=255)

             tAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATt‑a                                                                                                                               >  2:30671/1‑140 (MQ=255)

               aaGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAACCAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGTGGTTTTGTTGTTGTTTATGTTATt‑tct                                                                                                                             >  1:2097923/1‑140 (MQ=255)

               aaGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGTGTTTTTTTTTTTTTTTTTTttatt‑aat                                                                                                                             >  1:2341167/1‑138 (MQ=255)

                    tACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGTTTTTTTTTTATTTTTTATGTAAAT‑AAT‑Aaaaa                                                                                                                       >  2:377279/1‑140 (MQ=255)

                    tACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGTTTTTTTGTTGTTTTTTATGTAATT‑ACA‑ACaaa                                                                                                                       >  2:1441220/1‑140 (MQ=255)

                    tACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGTGTTTTTTTTGTTTTTTATGttatt‑agagaaaa                                                                                                                        >  1:315672/1‑133 (MQ=255)

                     aCTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGTTTTTTTTTTGTTTTTTATTTAATT‑AAT‑AAAAAt                                                                                                                      >  2:295549/1‑140 (MQ=255)

                     aCTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATT‑ACT‑ACAAAt                                                                                                                      >  2:602276/1‑140 (MQ=255)

                     aCTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGTGTTTTTGTTCTTTTTTATGTAATT‑ACT‑ACAAAt                                                                                                                      >  2:1991332/1‑140 (MQ=255)

                     aCTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGTGTTTTTGTTATTTTTTATGTAATT‑AAA‑ACAAAt                                                                                                                      >  2:1192666/1‑140 (MQ=255)

                           aTTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGTGTTTTTGGTGTTTTTTATTTTATT‑AAT‑ACAAAATTTaaa                                                                                                                >  1:1577034/1‑140 (MQ=255)

                            ttGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGTAAAACGGGCGTTTTTTTGTTTTTTTTTATTTAATT‑AAT‑ACAAAAATGaaaa                                                                                                               >  1:2332607/1‑140 (MQ=255)

                            ttGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGTGCGTTGTTTTTTTTGTGTTTGTTTATTTAACT‑AAAAATTTGaaa                                                                                                                >  1:1643682/1‑140 (MQ=255)

                            ttGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGTTTTTTTTTTATTTTTTATGTAAAT‑AAG‑AAAAAATTTaaaa                                                                                                               >  2:1256254/1‑140 (MQ=255)

                            ttGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGTGTTTTTTTTTTTTTTTTTTTAATT‑TAT‑AAAAAATTTaaaa                                                                                                               >  1:2332287/1‑140 (MQ=255)

                            ttGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGTGGTTTTTTTTGTTTTTTTGTAATT‑TCT‑AAAAAATTTaaaa                                                                                                               >  1:1584664/1‑140 (MQ=255)

                              ggCTGAAACGGCTTGCTGAATCGGTGCAGTGGGGGGAATTTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATT‑ACT‑ACAAATTTGAAAAAt                                                                                                             <  2:2092389/140‑1 (MQ=255)

                              ggCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATT‑ACT‑ACAAATTTGAAAAAt                                                                                                             <  2:1420099/140‑1 (MQ=255)

                              ggCTCAAAGGGCTTGCTTAATGGGTGCATAGCGGGTAAATTTTTAAATTTATACCGATTTAAAAAAAGAAAAAAAAAA‑ACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATT‑ACT‑ACAAATTTGAAAAAt                                                                                                             <  1:1741021/140‑1 (MQ=255)

                               gCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGTTTTTTTGTTGTTTTTTATTTAATT‑TCT‑AAAAAATTGAAAAAT‑a                                                                                                           >  2:428675/1‑140 (MQ=255)

                                cTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGTGTTTTTGTTGTTTTTTATGTAATT‑AAT‑AAAAATTTTTAAAAT‑aa                                                                                                          >  2:866664/1‑139 (MQ=255)

                                   aaaCGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATT‑ACT‑ACAAATTTGAAAAAT‑ACggg                                                                                                       <  2:2485890/140‑1 (MQ=255)

                                   aaaCGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGTGTTTTTGTTCTTTTTTATTTAATT‑ACT‑ACAAAATTTAAAAAA‑AAggg                                                                                                       >  2:779134/1‑140 (MQ=255)

                                       ggCTTGCTGAATCGGTGCAGCGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATT‑ACT‑ACAAATTTGAAAAAT‑ACGGGaaaa                                                                                                   <  1:2695971/140‑1 (MQ=255)

                                         cTTGCTGAATCGTTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGTGTTATTGTTCTTTTTTATGTAATT‑AAT‑AAAAAATTGAAAAAT‑ACGGGaaaaaa                                                                                                 >  2:1431307/1‑139 (MQ=255)

                                         cTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGTGTTGTTGTTATTTTTTATGTAATT‑AAT‑ACAAAATTTAAAAAT‑AAGGGaaaaaa                                                                                                 >  2:1200583/1‑139 (MQ=255)

                                             gtGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCTATTTAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATT‑ACT‑ACAAATTTGAAAAAT‑ACGGGAAAAACATcc                                                                                             <  1:1746566/139‑1 (MQ=255)

                                                 aTCGGTGCAGAGGGGGGAATTTTTTAAATTTATACCGTTTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATT‑ACT‑ACAAATTTGAAAAAT‑ACGGGAAAAACATCCCAtt                                                                                         <  2:1177516/140‑1 (MQ=255)

                                                      tGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGTGTTTTTGTTGTTTTTTATGTAATT‑ACT‑ACAAATTTTAAAAAT‑AAGGGAAAAACATACCCTTTAAtt                                                                                    >  2:2270437/1‑140 (MQ=255)

                                                        cAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGTGTTTTTGTTTTTTTTTATTTTAAT‑AAT‑AAAAAATTTAAAAAA‑AACGGAAAAAAAAACCAATTACTTca                                                                                  >  1:2700028/1‑139 (MQ=255)

                                                         agagCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATT‑ACT‑ACAAATTTGAAAAAT‑ACGGGAAAAACATCCCATTTACTTCCa                                                                                 <  1:1159934/140‑1 (MQ=255)

                                                         agagCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATT‑ACT‑ACAAATTTGAAAAAT‑ACGGGAAAAACATCCCATTTACTTCCa                                                                                 <  1:1980772/140‑1 (MQ=255)

                                                          gagCGGGGAAATTTTTAAATTTCTACCGATTGAAACACAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGTGGTTTTGTTCTTTTTTTTGTAATT‑AAT‑AAAAATATTAAAAAA‑ACGGGTAAAAAAAACCATTTTCTTACaa                                                                                >  2:1186399/1‑140 (MQ=255)

                                                               gggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGTGTTGTTGTTGTTTTTTATTTTATT‑AAT‑ACAAAATTTAAAAAA‑AAGGGAAAAAAAACCCAAATAATTACAAAaaat                                                                           >  1:2782411/1‑140 (MQ=255)

                                                                ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCTTTTTGTTGTTGTTTTTTATTTTAGT‑AAT‑ACAAATTTGAAAAAT‑ACTGGAAAAACATAGCATTTAATTCCAAAATAtt                                                                          >  2:1355443/1‑140 (MQ=255)

                                                                ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGTTTTTTTTTTGTTTTTTTTTTAATT‑ACT‑AACAATTTTAAAAAT‑ACGGGGAAAAAATACCATTTAATTACAAAAtttt                                                                          >  2:1674412/1‑140 (MQ=255)

                                                                ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGTTTTTTTTTTGTTTTTTATTTTATT‑AAT‑ACAAATTTTAAAAAA‑AAGGGAAAAACATACCAATTAAGTCCAAAattat                                                                          >  2:2677203/1‑137 (MQ=255)

                                                                ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGTTTTTTTGTTGTTTTTTTTGTTATT‑TAT‑AAAAATTTTTAAAAT‑AATGGAAAAAAATACCATTTTATTAAAAAATAtt                                                                          >  2:453989/1‑140 (MQ=255)

                                                                ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGTTTTTTTGTTGTTTTTTATTTAATT‑ACT‑AAAAATTTGTAAAAT‑AAGGGTAAAACAAACCATTTAAGTACAAAATAtt                                                                          >  2:144207/1‑140 (MQ=255)

                                                                ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGTGTTTTTGTTGTTTTTTTTTTTATT‑TAT‑AAAAAAATGAAAAAT‑AAGGGGAAAAAAAACCAATTAATTACAAAAAAtt                                                                          >  1:1441376/1‑140 (MQ=255)

                                                                ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGTGTTTTTGTTGTGTTTTTTGTTATT‑AAT‑TCAAATTTTTAAAAT‑AAGGGAAAAACATCACATTTAATTCAAAAAGAtt                                                                          >  1:2166274/1‑140 (MQ=255)

                                                                ggAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGTGTTTTTGTTCTTGTTTATGTAAGT‑ACT‑ACAAAATTGAAAAAT‑ACGGGAAAAACATCCCATGTACTTCCCAAATAtt                                                                          >  2:1664041/1‑140 (MQ=255)

                                                                    aTTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGTGTTTTTGTTGTTTTTTATGTAATT‑AAT‑AAAAAATTTTAAAAT‑AAGGGAAAAAAAACCCCAGTACTTACAAAATATTTTAt                                                                      >  2:73560/1‑140 (MQ=255)

                                                                     tttttAATTTTATTCCTATTGAAA‑AAAACAAAACAAAACACGCCTGGGAAACCGGGCGTTTTTTTGTTATTTTTTATGTAATT‑ACT‑ACAAATTTGAAAAAT‑ACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATg                                                                     <  1:1186399/140‑1 (MQ=255)

                                                                     tttttAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGTGGTTTTGTTGTTTTTTTTTTTATT‑TAA‑ATAAATTTGTTAAATAAGGGGGAAAAAAACCCCTTTA‑TTGGAAAATAttttttt                                                                     >  1:1885945/1‑136 (MQ=255)

                                                                                ataCCTATTCAAACAAATAAAAACAAAA‑ACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATT‑ACT‑ACAAATTTGAAAAAT‑ACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATg                                                          <  1:951994/140‑1 (MQ=255)

                                                                                ataCCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATT‑ACT‑ACAAATTTGAAAAAT‑ACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATg                                                          <  1:805419/140‑1 (MQ=255)

                                                                                      aTTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGTGTTTTTTTTGTTTTTTTTGTAATT‑AATAAAAAATTTAAAAAAA‑AAGGGAAATA‑ATACCAATTTTTTTGAAAAAATTTTATGGTGTTTTTATTTTGGtt                                                    >  1:2502621/1‑139 (MQ=255)

                                                                                        tGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGTTTTTTTGTTGTTTTTTATTTTATT‑TAT‑TCAAATTTGAAAAAT‑AAGGGAAAAAAATACCATTTAATTTGAAAATATTTGTTTGTAATTTTATGTTGGTtaa                                                  >  2:1707330/1‑140 (MQ=255)

                                                                                          acaCAAAGTAAAACAAAA‑ACCCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATT‑ACT‑ACAAATTTGAAAAAT‑ACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAAt                                                <  2:2105582/138‑1 (MQ=255)

                                                                                          aaaaaaAGTAAAACAAAA‑ACGCCTGTGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATT‑ACT‑ACAAATTTGAAAAAT‑ACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAAt                                                <  2:125229/140‑1 (MQ=255)

                                                                                          aaaCAACCTAAACCAAAA‑ACTACTGCGAAACCGGGCGTTTTTTTGTTCTTTTTTATTTAATT‑AAT‑ACAAATTTGAAAAAT‑ACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAAt                                                <  1:2190049/140‑1 (MQ=255)

                                                                                          aaaCAAATTAAAACAAAA‑ACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATT‑ACT‑ACAAATTTGAAAAAT‑ACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAAt                                                <  1:1192666/140‑1 (MQ=255)

                                                                                          aaaCAAATTAAAACAAAA‑ACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATT‑ACT‑ACAAATTTGAAAAAT‑ACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAAt                                                <  2:2601968/140‑1 (MQ=255)

                                                                                          aaaCAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATT‑ACT‑ACAAATTTGAAAAAT‑ACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAAt                                                <  1:602276/140‑1 (MQ=255)

                                                                                          aaaCAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATT‑ACT‑ACAAATTTGAAAAAT‑ACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAAt                                                <  2:1030873/140‑1 (MQ=255)

                                                                                          aaaCAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATT‑ACT‑ACAAATTTGAAAAAT‑ACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAAt                                                <  2:2601887/140‑1 (MQ=255)

                                                                                          aaaCAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATT‑ACT‑ACAAATTTGAAAAAT‑ACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAAt                                                <  2:2428789/140‑1 (MQ=255)

                                                                                               aaGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATT‑ACT‑ACAAATTTGAAAAAT‑ACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTa                                           <  2:1577034/140‑1 (MQ=255)

                                                                                                    aaccAAAA‑ACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATT‑ACT‑ACAAATTTGAAAAAT‑ACGGGACACACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                      <  2:2128992/137‑1 (MQ=255)

                                                                                                    aaacaaac‑ACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATT‑ACT‑ACAAATTTGAAAAAT‑ACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                      <  2:1584664/140‑1 (MQ=255)

                                                                                                    aaacaaac‑ACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATT‑ACT‑ACAAATTTGAAAAAT‑ACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                      <  2:82407/140‑1 (MQ=255)

                                                                                                    aaaaaaaa‑ACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATT‑ACT‑ACAAATTTGAAAAAT‑ACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                      <  1:462399/140‑1 (MQ=255)

                                                                                                    aaaCAAAA‑CCGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATT‑ACT‑ACAAATTTGAAAAAT‑ACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                      <  1:2457407/140‑1 (MQ=255)

                                                                                                    aaaCAAAA‑ACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATT‑ACT‑ACAAATTTGAAAAAT‑ACGGGAAAAACATCCCATTTACTTCCACAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                      <  2:408/140‑1 (MQ=255)

                                                                                                    aaaCAAAA‑ACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATT‑ACT‑ACAAATTTGAAAAAT‑ACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                      <  2:330326/140‑1 (MQ=255)

                                                                                                    aaaCAAAA‑ACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATT‑ACT‑ACAAATTTGAAAAAT‑ACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                      <  2:1743479/140‑1 (MQ=255)

                                                                                                    aaaCAAAA‑ACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATT‑ACT‑ACAAATTTGAAAAAT‑ACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                      <  1:1947284/140‑1 (MQ=255)

                                                                                                    aaaCAAAA‑ACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATT‑ACT‑ACAAATTTGAAAAAT‑ACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                      <  2:2284884/140‑1 (MQ=255)

                                                                                                    aaaCAAAA‑ACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATT‑ACT‑ACAAATTTGAAAAAT‑ACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                      <  1:30671/140‑1 (MQ=255)

                                                                                                    aaaCAAAA‑ACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATT‑ACT‑ACAAATTTGAAAAAT‑ACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                      <  2:1319128/140‑1 (MQ=255)

                                                                                                    aaaCAAAA‑ACGCCTGGGAAACCGGGCGTGTTTTTGGTGTTTTTTATGTAATT‑AAT‑AAAAATTTTAAAAAT‑AAGGGAAAAAAAAACCATTTACATGAAAAATAATTGTTTGTAAATTTATTTTGGTAAAAAGTGTTTTTgg                                      >  2:431253/1‑140 (MQ=255)

                                                                                                     aaCAAAACACGCCTGGGAAACCGGGAGTTTTTTTGTTCATTTTTCTGTAATT‑ACT‑ACAAATTTGAAAAAT‑ACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTgg                                      <  1:452106/140‑1 (MQ=255)

                                                                                                     aaCAAAA‑ACGCCTGGGAAACCGGGCGTGTTTTTGTTAAATTTTATTTAATT‑ACA‑AAAAATATGAAAAAT‑AAAGGAAAAACAAACCATTATCTTCAAAAATATATGATGGTAATTTTATGTAGGTAAAATTTGTaaatagc                                     >  2:2854314/1‑134 (MQ=255)

                                                                                                          aacaCGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATT‑ACT‑ACAAATTTGAAAAAT‑ACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGtt                                 <  2:1352939/137‑1 (MQ=255)

                                                                                                          aa‑aCGCCTGGGAAACCGGGCGTTTTTTTGTTGTTTTTTTTGTTATT‑TCT‑ACAAATTTGAAAAAT‑ACGGGAAAAACATACCATTTACGTCCCACATATTTGATGGTAATTTTTTGTTTGTAAAATTTTTTTTTGGGCGttg                                >  2:2124551/1‑139 (MQ=255)

                                                                                                          aa‑aCGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTTAAT‑ACT‑ACAAAATTGTAAAAT‑AAGGGAAAAAAAAACCCTTTTATTCCAAAAAAAATTATGGTAAATTGTTGTAGGTAAAATTTGTTCTTggggcgta                                >  2:1939454/1‑134 (MQ=255)

                                                                                                             aCGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATT‑ACT‑ACAAATTTGAAAAAT‑ACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCag                              <  1:693427/140‑1 (MQ=255)

                                                                                                             aCGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATT‑ACT‑ACAAATTTGAAAAAT‑ACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCag                              <  1:1299537/140‑1 (MQ=255)

                                                                                                                    ggAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATT‑ACT‑CCAAATTTGAAAAAT‑ACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGt                       <  1:1256254/140‑1 (MQ=255)

                                                                                                                    ggAAACCGGGCGTTTTTTTGTTATTTTTTATGTAATT‑ACT‑ACAAATTTGAAAAAT‑ACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGt                       <  1:1776703/140‑1 (MQ=255)

                                                                                                                              cgcttttttGTTCTCTTTTAGCTAATT‑ACT‑ACAAAGGTGCAACAT‑ACGCGACAAACATCCCATTTACGACCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCggg             <  2:2480448/137‑1 (MQ=255)

                                                                                                                              cGTTTTTTTGTTCTTTTTTATGTAATT‑ACT‑ACAAATTTGAAAAAT‑ACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCggg             <  1:1059548/140‑1 (MQ=255)

                                                                                                                              cGTTTTTTTGTTCTTTTTTATGTAATT‑ACT‑ACAAATTTGAAAAAT‑ACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCggg             <  1:724253/140‑1 (MQ=255)

                                                                                                                              cGTTTTTTTGTTCTTTTTTATGTAATT‑ACT‑ACAAATTTGAAAAAT‑ACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCggg             <  1:377279/140‑1 (MQ=255)

                                                                                                                                    tttGTTCTTTTTTATTTAATT‑ACT‑ACAAATTTGAAAAAT‑AAGGGAAAAACAAACCATTTAATTACAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTTGCCGTTGAGAGGAGGTGAAAAGCGGGCAGGcc       >  2:2053565/1‑140 (MQ=255)

                                                                                                                                    tttGGTTTTTTTTATGTAATT‑AAT‑AAAAATTTTAAAAAA‑AAGGGAAAAAAAACCCATTTAATTACAAAATAATTTATGGTAAATTTATTTAGGTAAAAATTTTATTTTTCCGTTCAGAGGAGGTGAAAACAGGGCACGcc       >  2:423006/1‑140 (MQ=255)

                                                                                                                                         tCTTTTTTATGTAATT‑ACT‑ACAAATTTGAAAAAT‑ACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCGGGCAGGCCTGAat  <  1:1664041/140‑1 (MQ=255)

                                                                                                                                         tCTTTTTTATGTAATT‑ACT‑ACAAATTTGAAAAAT‑ACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCGGGCAGGCCTGAat  <  2:2341167/140‑1 (MQ=255)

                                                                                                                                         tCTTTTTTATGTAATT‑ACT‑ACAAATTTGAAAAAT‑ACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCGGGCAGGCCTGAat  <  2:2700028/140‑1 (MQ=255)

                                                                                                                                         tCTTTTTTATGTAATT‑ACT‑ACAAATTTGAAAAAT‑ACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCGGGCAGGCCTGAat  <  2:1281460/140‑1 (MQ=255)

                                                                                                                                         tCTTTTTTATGTAATT‑ACA‑ACAAATTTGAAAAAT‑ACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCGGGCAGGCCTGAat  <  2:2432341/140‑1 (MQ=255)

                                                                                                                                         tCTATTATATCTACTT‑ACT‑ACAACATTGAAAAAT‑ACGCGAAAAACATCCCATTTACTTCCAAAATCTCTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGGTCAGAGGAGGTGCACAGCGCGCAGGCCTGAat  <  2:483861/140‑1 (MQ=255)

AACTGGAAAGCTCTAAAGCTTACTATGATTGGCTGAAACGGCTTGCTGAATCGGTGCAGAGCGGGGAAATTTTTAAATTTATACCGATTGAAACAAAGTAAAACAAAA‑ACGCCTGGGAAACCGGGCGTTTTTTTGTTCTTTTTTATGTAATT‑ACT‑ACAAATTTGAAAAAT‑ACGGGAAAAACATCCCATTTACTTCCAAAATATTTGATGGTAATTTTATGTAGGTAAAATTTGTATTTGGCCGTTCAGAGGAGGTGAAAAGCGGGCAGGCCTGAAT  >  NZ_CP034943/2991099‑2991374

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`