Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NZ_CP034943 2,034,593 C→A 17.4% intergenic (‑259/‑135) EO946_RS10175 ← / → EO946_RS10180 UPF0715 family protein/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0349432,034,5930CA17.4% 332.9 / 23.3 160intergenic (‑259/‑135)EO946_RS10175/EO946_RS10180UPF0715 family protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base C (107/20);  new base A (2/31);  total (109/51)
Fisher's exact test for biased strand distribution p-value = 2.56e-17
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 160 total aligned reads displayed.

TAATGGTGGCTGTTATGTTTACATGCAGATTCCTTCCCTAACCTGTCCTTATCTCCGCTTCTTTTTCAAA‑CGTTTTGTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAA‑AAACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATAAGAAGAGTTGATATTCAACACTTTTCGTAAAGGGGTGACACCAATGA  >  NZ_CP034943/2034456‑2034731
                                                                                                                                          |                                                                                                                                           
      tggCTGTTATGTTTACATGCAGATTCCTTCCCTAACCTGTCCTTATCTCCGCTTCTTTTTCAAA‑CGTTTTGTACAGTGTGTCCCAGCTTTAGTCAGCTTCTTCATATACGACGTGTGCTAATAAAATGTTTCAA‑AAACGa                                                                                                                                    >  2:3231215/1‑140 (MQ=255)
      tggCTGTTATGTTTACATGCAGATTCCTTCCCTAACCGGTCCTTATCTCCGCTTCTTTTTCAAA‑CGTTTTGTACAGTGTTTCCCAGCTTTAGTCATCTTCTTCATATACGAAGGGTGCTAATAAAATGTTTAAA‑AAACGa                                                                                                                                    >  2:869436/1‑140 (MQ=255)
        gCTGTTATGTTTACATGCAGATTCCTTCCCTAACCTGTCCTTATCTCCGCTTCTTTTTCAAA‑CGTTTTGTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAA‑AAACGAcc                                                                                                                                  >  2:134829/1‑140 (MQ=255)
        gCTGTTATGTTTACATGCAGATTCCTTCCCTAACCTGTCCTTATCTCCGCTTCTTTTTCAAA‑CGTTTTGTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAA‑AAACGAcc                                                                                                                                  >  1:1297403/1‑140 (MQ=255)
        gCTGTTATGTTTACATGCAGATTCCTTCCCTAACCTGTCCTTATCTCCGCTTCTTTTTCAAA‑CGTTTTGTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAA‑AAACGAcc                                                                                                                                  >  2:3526600/1‑140 (MQ=255)
        gCTGTTATGTTTACATGCAGATTCCTTCCCTAACCTGTCCTTATCTCCGCTTCTTTTTCAAA‑CGTTTTGTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAA‑AAACGAcc                                                                                                                                  >  2:1810893/1‑140 (MQ=255)
                 tttACATGCAGATTCCTTCCCTAACCTGTCCTTATCTCCGCTTCTTTTTCAAA‑CGTTTTGTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAA‑AAACGACCGGGGTAAAg                                                                                                                         >  1:612803/1‑140 (MQ=255)
                 tttACATGCAGATTCCTTCCCTAACCTGTCCTTATCTCCGCTTCTTTTTCAAA‑CGTGTTGTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAA‑AAACGACCGGGGTAAAg                                                                                                                         >  1:2298142/1‑140 (MQ=255)
                    aCATGCATTTTCCTCCCCTACCCTGTCTTTATCTCCGATTTTTTTTCAAA‑GGTTTTGTACCGTTTTTCCCCGCTTTCGTCATCTTCTACATATACGAAGTGTGATAAAAAAATGTTAAAA‑ACACGACCGGGGTAAAGCTg                                                                                                                      <  2:2298142/140‑1 (MQ=255)
                     cATGCATATCCCTGCCCTAACCTGTCCTTATCTCCG‑TTTTTTTTCAAACCTTTTTTTACTGTGTTTCCCAGGTTTATTAAGATTCTTAATAAACCAAGTGTGCAAATAAATTTTTACAA‑AAACGACCGGGGTAAAGCTGa                                                                                                                     <  2:2100176/140‑1 (MQ=255)
                     cATGCAGTTTCCGTCCCTACCCGGTCCTTATCTCCGCTTCTTTTTCAAC‑CGTTGGGTACTTTTTTCCCCAGCTTTAGTCAGCTTCTTAATATCCGACGGGTGATAATAAAATGTTACAA‑AAACGACCGGGGTAAAGCTGa                                                                                                                     <  2:754894/140‑1 (MQ=255)
                     attGCAGATTCCTTCCCTCACCTGTCCTTTTCTCCGTTTCTTTTTAAAA‑CTTTTTGTACATTTTTCCCCAGCTTTCTTATCCTTATTAAAATCCCATGTGTGATAATAAACTTTATAAA‑AAACGACCGGGGTAAAGCTGa                                                                                                                     <  2:1569524/138‑1 (MQ=255)
                      aTGCAGATTCCTTCCCTAACCTGTCCTTATCTCCGCTTCTTTTTCAAA‑CGTTTTGTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAA‑AAACGACCGGGGTAAAGCTGAc                                                                                                                    >  1:1722462/1‑140 (MQ=255)
                      aTGCAGATTCCTTCCCTAACCTGTCCTTATCTCCGCTTCTTTTTCAAA‑CGTTTTGTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAA‑AAACGACCGGGGTAAAGCTGAc                                                                                                                    >  1:2221180/1‑140 (MQ=255)
                          attttccttccCTACCGTGTCCTTTTCTCCGTTTTTTTTTAAAC‑GGTTTTTTACTGTTTTCCCCCGCTTCAGTCAGCTTCTACATATACGATGTTTGATATTAAATTGTTTAAA‑AAACGACCGGGGTAAAGCTGActctc                                                                                                                <  2:1349284/137‑1 (MQ=255)
                          ataTTCGTTCCCTACCCTGTCCTTTTCTCCGTTTCTTTTTCAAA‑CTTTTTTTAACGTTTTTCCCAGCTTTAGTCAGCTTTTTCATATACTATGTGTGATAATAAATTTTTAAAA‑AAACGACCGGGGTAAAGCTGActctc                                                                                                                <  2:2094556/138‑1 (MQ=255)
                          aGATTCCTTCCCTAACCTGTCCTTATCCCCGATTATTTTTCAAA‑GGTTTTGTACTGTTTTTCCCAGCTTTAGACAGTTTCTAAATATACCAAGGTTGCTAATAAATTTTTTCAA‑AAACGACCGGGGTAAAGCTGActctc                                                                                                                <  2:3922340/140‑1 (MQ=255)
                           gATTCCTTCCCTAACCTGTCCTTATCTCCGCTTCTTTTTCAAA‑CGTTTTGTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAA‑AAACGACCGGGGTAAAGCTGActctct                                                                                                               >  1:2100176/1‑140 (MQ=255)
                           gATTCCTTCCCTAACCTGTCCTTATCTCCGCTTCTTTTTCAAA‑CGTTTTGTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAA‑AAACGACCGGGGTAAAGCTGActctct                                                                                                               >  1:974125/1‑140 (MQ=255)
                           gATTCCTTCCCTAACCTGTCCTTATCTCCGCTTCTTTTTCAAA‑CGTTTTGTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAA‑AAACGACCGGGGTAAAGCTGActctct                                                                                                               >  2:2578612/1‑140 (MQ=255)
                           gATTCCTTCCCTAACCTGTCCTTATCTCCGCTTCTTTTTCAAA‑CGTTTTGTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAA‑AAACGACCGGGGTAAAGCTGActctct                                                                                                               >  2:2747285/1‑140 (MQ=255)
                            aTTCCTTCCCTAACCTGTCCTTATCTCCGCTTCTTTTTCAAA‑CGTTTTGTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAA‑AAACGACCGGGGTAAAGCTGACTCTCtt                                                                                                              >  2:3192129/1‑140 (MQ=255)
                            aTTCCTTCCCTAACCTGTCCTTATCTCCGCTTCTTTTTCAAA‑CGTTTTGTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAA‑AAACGACCGGGGTAAAGCTGACTCTCtt                                                                                                              >  2:1037045/1‑140 (MQ=255)
                              gccttccCAAACCTTACCTTATCTCCGCTTCTTTTAAAAA‑CGTTTTGAACCGTGTTCCCACGCTTTAGTACGCTTCTACATTTCCGACGTGTGCTAATAAAATGTTCAAA‑ACACGACCGGGGTAAAGCTGACTCTCTTGt                                                                                                            <  2:2437684/139‑1 (MQ=255)
                                  tccCTAACCTGTCCTTATCTCCGCTTCTTTTTCAAA‑CGTTTTGTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAA‑AAACGACCGGGGTAAAGCTGACTCTCTTGTCTTa                                                                                                        >  2:384071/1‑140 (MQ=255)
                                  tccCTAACCTGTCCTTATCTCCGCTTCTTTTACAAC‑CTTTTTGTACTTTGTTTCCCCGCTTTAGACAGCTTATTCATATACCACGTGTGATAAAAAAATTTTTCAA‑AAACGACCGGGGTAAAGCTGACTCTCTTGTCTTa                                                                                                        <  2:1902058/140‑1 (MQ=255)
                                             tCCTTCTCTCCGCTTCTTTTTCAAA‑CGTTTTGTACAGTGTTTCCCAGCTTTAGTCAGCTTCGTCATATACGAAGTGTGCTAATAAAATGTTTCAA‑AAACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAagag                                                                                             >  1:1764995/1‑140 (MQ=255)
                                             tCCTTATCTCCGCTTCTTTTTCAAA‑CGTTTTGTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAA‑AAACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGACagag                                                                                             >  1:3728269/1‑140 (MQ=255)
                                             tCCTTATCTCCGCTTCTTTTTCAAA‑CGTTTTGTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAA‑AAACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAcgag                                                                                             >  2:1127519/1‑140 (MQ=255)
                                             tCCTTATCTCCGCTTCTTTTTCAAA‑CGTTTTGTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAA‑AAACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAagag                                                                                             >  2:696957/1‑140 (MQ=255)
                                             tCCTTATCTCCGCTTCTTTTTCAAA‑CGTTTTGTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAA‑AAACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAagag                                                                                             >  1:2716414/1‑140 (MQ=255)
                                             tCCTTATCTCCGCTTCTTTTTCAAA‑CGTTTTGTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAA‑AAACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAagag                                                                                             >  1:1966551/1‑140 (MQ=255)
                                             tCCTTATCTCCGCTTCTTTTTCAAA‑CGTTTTGTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAA‑AAACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAagag                                                                                             >  1:411716/1‑140 (MQ=255)
                                             tCCTTATCTCCGCTTCTTTTTCAAA‑CGTTTTGTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAA‑AAACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAagag                                                                                             >  1:3458014/1‑140 (MQ=255)
                                             tCCTTATCTCCGCTTCTTTTTCAAA‑CGTTTTGTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACCAAGTGTGCTAATAAAAATTTTCAA‑AAACCACCGGGGTAAAGCTGACTATCTTGTCTTAATGGGAAatag                                                                                             >  1:350869/1‑140 (MQ=255)
                                                  aTCTCCGCTTCTTTTTCAAA‑CGTTTTGTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAA‑AAACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAAc                                                                                        >  2:874108/1‑140 (MQ=255)
                                                  aTCTCCGCTTCTTTTTCAAA‑CGTTTTGTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAA‑AAACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAAc                                                                                        >  2:126459/1‑140 (MQ=255)
                                                       cGCTTGTTTTTCAAA‑CGGTTTGTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAA‑AAACGACCGGGGTAAAGCTGTCTCTCTTGTCTTTATTGGAAAGAGTCAACGaaaa                                                                                   >  1:3347780/1‑140 (MQ=255)
                                                       cGCTTCTTTTTCAAA‑CGTTTTGTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAA‑AAACGACCGGGGTAAAGCTGACTCTCTTTTCTTAATGGGAAAGAGTCAACGaaaa                                                                                   >  1:237880/1‑140 (MQ=255)
                                                       cGCTTCTTTTTCAAA‑CGTTTTGTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAA‑AAACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGaaaa                                                                                   >  1:4023908/1‑140 (MQ=255)
                                                       cGCTTCTTTTTCAAA‑CGTTTTGTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAA‑AAACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGaaaa                                                                                   >  2:2146999/1‑140 (MQ=255)
                                                       cGCTTCTTTTTCAAA‑CGTTTTGTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAA‑AAACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGaaaa                                                                                   >  1:1257119/1‑140 (MQ=255)
                                                       cGCTTCTTTTTCAAA‑CGTTTTGTACAGTGTTTACCCGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCCA‑AAAAGACAGGGGTAAATCTTACTCTCGTGTCTTCAAGGGAAAGAGTCAAAGaaaa                                                                                   >  1:584093/1‑140 (MQ=255)
                                                         cttcttTTTCAAA‑CGTTTTGTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAA‑AAACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGaaaaaa                                                                                 >  2:524498/1‑140 (MQ=255)
                                                           tatttttCAAA‑CTTTTTGTACAGTTTTTCCCTGCTTTAGTAAGCTTCTACATATACGATGTGTGCTAATAAATTGTTAAAA‑AAACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAg                                                                               <  2:2710096/138‑1 (MQ=255)
                                                              ttttCAAC‑CTTTTTTGACAGTGTTTCCAAGCTTTACTAAGCTTCTTACTATACGAAGGGTGATAATAAATTTTTTCAA‑AAACGACCGGGGTAAAACTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCga                                                                            <  2:411132/140‑1 (MQ=255)
                                                                       gtttttGTACTGTGTTTCCCAGCTTTATTCAGGTTCTTAATATACTCTTTGTGCTAATAAAATTTTTAAA‑AAACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATAc                                                                    <  2:2341716/138‑1 (MQ=255)
                                                                       gtttttGTAACGTGTTTCACAGATTTAGTCAGCTTCTTAATATACGAGGTGTGATAATAAATTTTTTAAA‑AAACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATAc                                                                    <  2:1726809/138‑1 (MQ=255)
                                                                       gtttttGAACTGTGTTTCCATTATTTAGAAAGGTTATTAATAAACTATGTGTAATAATAAATTGTTTCAA‑AAACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATAc                                                                    <  1:3341522/138‑1 (MQ=255)
                                                                       ggtgttGTACAGGTTTGCCCTGTTTGTGTCTGCTTCTTCATATACGTCTGGTCCTAA‑AAAATTTTTAAACACACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATAc                                                                    <  1:3341542/136‑1 (MQ=255)
                                                                         gtgtGTACCGTGTTACCCATCTTTAGTCATTTTCTTAATATACTATGTTTTATAATAAAATGTTAAAA‑ACACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCt                                                                  <  1:2264508/137‑1 (MQ=255)
                                                                                  actgttCCCATCTTTAGTCAGCTTCTTAATAAACGATGTTTGAAAATAAAATTTTACAA‑ACACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAacag                                                         <  2:1096094/136‑1 (MQ=255)
                                                                                   tgtTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGGTAATAAAATGTTTCAA‑AAACGACCGGGGTAAAGCTGACTCTCGTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGACTGAATACCTGCCTAacaga                                                        >  1:3922237/1‑140 (MQ=255)
                                                                                   tgtTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAA‑AAACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAacaga                                                        >  1:2604939/1‑140 (MQ=255)
                                                                                   tgtTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAA‑AAACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAacaga                                                        >  1:1763339/1‑140 (MQ=255)
                                                                                   tgtTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAA‑AAACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAacaga                                                        >  1:749391/1‑140 (MQ=255)
                                                                                   tgtTGCCCAGTTTTATTCAGCTTCTACATATACTATGTGTGATTATAAAATTTTACAA‑AAACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAacaga                                                        <  2:97421/140‑1 (MQ=255)
                                                                                    tttccccAGCTTTCGTCTGCTTTTCAATATCCGACGTGTGATAATAAAATTTTTAAA‑ACACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAacagac                                                       <  2:1297403/136‑1 (MQ=255)
                                                                                    tttccccAGATTTCGTACGCTATTTAATATACGATTTTTGCTAATAAAATTTTAAAA‑AAACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAacagac                                                       <  2:2502375/136‑1 (MQ=255)
                                                                                    gtTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAA‑AAACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAacctgt                                                       >  1:1050247/1‑136 (MQ=255)
                                                                                    gtTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAA‑AAACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAACCGAATGAATACCTGCCTAacctgt                                                       >  1:2178093/1‑136 (MQ=255)
                                                                                            tcTTTAGTACGCTTCTACATATACGATTTGTGCTAATAAATTTTTAAAA‑ACACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATaag                                               <  1:3192129/139‑1 (MQ=255)
                                                                                            gtttttttCAGCTTCTTCATATACCATTTTTGTTAATAAATTTTTAAAA‑AAACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATaag                                               <  1:321986/133‑1 (MQ=255)
                                                                                            gcttctgTCAGATTCTAAATATACGAAGTTTGATAATAAAATGTTAAAA‑AAACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATaag                                               <  2:2186056/134‑1 (MQ=255)
                                                                                             cTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAA‑AAACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAACGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATaaga                                              >  1:2532016/1‑140 (MQ=255)
                                                                                             cTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAA‑AAACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATaaga                                              >  1:1531425/1‑140 (MQ=255)
                                                                                             cTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAA‑AAACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATaaga                                              >  1:1530744/1‑140 (MQ=255)
                                                                                             cTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAA‑AAACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATaaga                                              >  1:1359150/1‑140 (MQ=255)
                                                                                               ttACTCACCTTCTAAACATCCGAAGTGTGAAAATAAAATGTAACAA‑ACACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATaagaag                                            <  1:3086482/140‑1 (MQ=255)
                                                                                                 aGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAA‑AAACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATAAGAagag                                          >  1:2063364/1‑140 (MQ=255)
                                                                                                       cttcttCATATACGAAGTGTGCTAATAAAATGTTTCAA‑AAACTAACGTTGTAAAGCTGACTATCTTGTATTAAAGGTAAAAAGTCAACGAAAAAAAGCTAATGAATACCTCCATAAAAGACATAATAAGAAGAGTTGata                                    >  2:3947826/1‑140 (MQ=255)
                                                                                                       cttcttCATATACGAAGTGTGCTAATAAAATGTTTCAA‑AAACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACCGACAGAATAAGAAGAGTTGata                                    >  2:3887930/1‑140 (MQ=255)
                                                                                                       cttcttCATATACGAAGTGTGCTAATAAAATGTTTCAA‑AAACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATAAGAAGAGTTGata                                    >  2:2037428/1‑140 (MQ=255)
                                                                                                         tcttaATATACGAAGTGTGATAATAAAATTTTTAAA‑ACACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATAAGAAGAGTTGATAtt                                  <  2:2178971/140‑1 (MQ=255)
                                                                                                         tctccATATACGACTTGTGCTAATAAAATGTTAAAA‑AAACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATAAGAAGAGTTGATAtt                                  <  2:3061927/140‑1 (MQ=255)
                                                                                                            taatatACTATGTGTGATAAAAAATTTTTAAAA‑AAACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATAAGAAGAGTTGATATTCaa                               <  1:2152761/138‑1 (MQ=255)
                                                                                                                ataCTATGTGGGATAAAAAAATTTTAAAA‑AAACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATAAGAAGAGTTGATATTCAACACt                           <  2:1799304/140‑1 (MQ=255)
                                                                                                                ataCGAAGTGTGCTAAGAAAATGTTTCAA‑AAACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATAAGAAGAGTTGATATTCAACACt                           >  1:494260/1‑140 (MQ=255)
                                                                                                                 taCGAAGTGTGCTAATAAAATGTTTCAA‑AAACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATAAGAAGAGTTGATATTCAACACtt                          >  2:157858/1‑140 (MQ=255)
                                                                                                                     aaGTGTGCTAATAAAATGTTTCAA‑AAACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTCACAGACAGAATAAGAAGAGTTGATATTCAACACTTTTCg                      >  1:1056682/1‑140 (MQ=255)
                                                                                                                     aaGTGTGCTAATAAAATGTTTCAA‑AAACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATAAGAAGAGTTGATATTCAACACTTTTCg                      >  2:3812862/1‑140 (MQ=255)
                                                                                                                      aGTGTGCTAATAAAATGTTTCAA‑AAACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATAAGACGAGTTGATATTCAACACTTTTCGt                     >  2:2061816/1‑140 (MQ=255)
                                                                                                                      aGTGTGCTAATAAAATGTTTCAA‑AAACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATAAGAAGAGTTGATATTCAACACTTTTCGt                     >  2:3427657/1‑140 (MQ=255)
                                                                                                                       gtgtGCTAATAAAATGTTTCAA‑AAACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATAAGAAGAGTTGATATTCAACACTTTTCGTa                    >  2:1192602/1‑140 (MQ=255)
                                                                                                                        ttttataataaATTGTTCAAA‑ACACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATAAGAAGAGTTGATATTCAACACTTTTCGTaa                   <  1:64469/135‑1 (MQ=255)
                                                                                                                        tgtgCTAATAAAATGTTTCAA‑AAACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATAAGAAGAGTTGATATTCAACACTTTTCGTaa                   >  2:3668091/1‑140 (MQ=255)
                                                                                                                        tgtgATAATAAATTTTTAAAA‑AAACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATAAGAAGAGTTGATATTCAACACTTTTCGTaa                   <  1:2589696/140‑1 (MQ=255)
                                                                                                                         gttataataaACTTTTAAAA‑AAACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATAAGAAGAGTTGATATTCAACACTTTTCGTaaa                  <  2:3691590/136‑1 (MQ=255)
                                                                                                                          tgCTAATAAAATGTTTCAA‑AAACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATAAGAAGAGTTGATATTCAACACTTTTCGTAAAg                 >  2:3345713/1‑140 (MQ=255)
                                                                                                                           tttaataaTTTTTTTAAA‑AAACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATAAGAAGAGTTGATATTCAACACTTTTCGTAAAgg                <  1:239749/138‑1 (MQ=255)
                                                                                                                            cTAATAAAATGTTTCAA‑AAACGACCGGGTTAAAGCTGACTCTCTAGTCTTAAAGTGAAAGAGACAACGAAAAAAAGCGAATGAAAACCTGCCTAACATACAGAATAAGAAGAGGTGATATTCAACACTATTCGTAAAtgg               >  1:918684/1‑140 (MQ=255)
                                                                                                                            cTAATAAAATGTTTCAA‑AAACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGACAGAGTCAACGAAAAAAAGCGAATGAATACCTGACTAACAGACAGAATAAGAAGAGTTGATATTCAACACTTTTCGTAAAggg               >  2:1742533/1‑140 (MQ=255)
                                                                                                                            cTAATAAAATGTTTCAA‑AAACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATAAGAAGAGTTGATATTCAACACTTTTCGTAAAggg               >  2:1492590/1‑140 (MQ=255)
                                                                                                                             taataaAATTTTACAA‑ACACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATAAGAAGAGTTGATATTCAACACTTTTCGTAAAgggg              <  1:1831923/140‑1 (MQ=255)
                                                                                                                             aaataaATTTTTAAAA‑ACACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATAAGAAGAGTTGATATTCAACACTTTTCGTAAAgggg              <  1:2747285/139‑1 (MQ=255)
                                                                                                                                taaAATGTTTCAA‑AAACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATAAGAAGAGTTGATATTCAACACTTTTCGTAAAGGGGTGa           >  2:559155/1‑140 (MQ=255)
                                                                                                                                    aTGTTTCAA‑AAACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATAAGAAGAGTTGATATTCAACACTTTTCGTAAAGGGGTGACAcc       >  1:406532/1‑140 (MQ=255)
                                                                                                                                     ggTTACAA‑CATCGACCGGGGTTAAGCTGAGTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATAAGAAGAGTTGATATTCAACACTTTTCGTAAAGGGGTGACACCa      <  1:1277295/139‑1 (MQ=255)
                                                                                                                                        ttCAA‑AAACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATAAGAAGAGTTGATATTCAACACTTTTCGTAAAGGGGTGACACCAATg   <  1:1992944/140‑1 (MQ=255)
                                                                                                                                         tCAA‑AAACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATAAGAAGAGTTGATATTCAACACTTTTCGTAAAGGGGTGACACCAATGa  >  1:131518/1‑140 (MQ=255)
                                                                                                                                          |                                                                                                                                           
TAATGGTGGCTGTTATGTTTACATGCAGATTCCTTCCCTAACCTGTCCTTATCTCCGCTTCTTTTTCAAA‑CGTTTTGTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAA‑AAACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATAAGAAGAGTTGATATTCAACACTTTTCGTAAAGGGGTGACACCAATGA  >  NZ_CP034943/2034456‑2034731

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑