New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP034943	= 80462	308 (0.880)	5 (0.010)	3/252	NT	1.6%	intergenic (+18/‑32)	hslO/EO946_RS00430	redox‑regulated molecular chaperone HslO/peptidyl‑prolyl cis‑trans isomerase
	?	NZ_CP034943	80466 =	312 (0.890)					intergenic (+22/‑28)	hslO/EO946_RS00430	redox‑regulated molecular chaperone HslO/peptidyl‑prolyl cis‑trans isomerase
Rejected: Frequency below/above cutoff threshold.

GCCGAAGCAGTATGCCATTTTTGTAATGAAAAGTACTTATTTACAAAAGAAGAGCTGGAAGGGCTTCGTGACCAAACTACCCGCTAAGCTCTTTAGCGGGTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NZ_CP034943/80358‑80462 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AATTTGAGAAAAGGGGCTGAAAACAGATTTGAAATCAAGAACTATCTGGACCATTATTTTAGGGGCGCTGTTGGTT  >  NZ_CP034943/80466‑80541                                                                                                                                                                                       GCCGTAGCTGTATTCAATTTTTGTAATGAAAAGTATTTATTTACAAAAGAAGATCTGGAAGGGCTTCGTGACCAAACTACCCGCTACGCTCTTTAGCTGGTTTTTAATTTGAGATAAGGGGCTGAAAGCAGGTTTGAAAT                                           <  1:244726/140‑1 GCCGAAGCATTATGCCATTTTTGTAATGAAAAGTACTTATTTACAAAAGAAGAGCTGGAAGGGCTTCGTGACCAAACTACCCGCTAAGCTCTTTAGCGGGTTTTTAATTTGAGAAAAGGGGCTGAAAGCAGGTTTGAAAT                                           <  1:3870793/140‑1 GCCGAAGCAGTATGCCATTTTTGTAATGAAAAGTACTTATTTACAAAAGAAGAGCTGGAAGGGCTTCGTGACCAAACTACCCGCTAAGCTCTTTAGCGGGTTTTTAATTTGAGAAAAGGGGCTGAAAGCAGGTTTGAAAT                                           <  1:5171310/140‑1                  TTTTTGTAATGAAAAGTACTTATTTACAAAAGAAGAGCTGGAAGGGCTTCGTGACCAAACTACCCGCTAAGCTCTTTAGCGGGTTTTTAATTTGAGAAAAGGGGCTGAAAGCAGGTTTGAAATCAAGAACAATCTGGACC                          >  1:3064272/1‑140                                          TACAAAAGAAGAGCTGGAAGGGCTTCGTGACCAAACTACCCGCTAAGCTCTTTAGCGGGTTTTTAATTTGAGAAAAGGGGCTGAAAGCAGGTTTGAAATCAAGAACAATCTGGACCATTATTTTAGGGGCGCTGTTGGTT  <  2:3064272/140‑1                                                                                                                                                                                       GCCGAAGCAGTATGCCATTTTTGTAATGAAAAGTACTTATTTACAAAAGAAGAGCTGGAAGGGCTTCGTGACCAAACTACCCGCTAAGCTCTTTAGCGGGTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NZ_CP034943/80358‑80462 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AATTTGAGAAAAGGGGCTGAAAACAGATTTGAAATCAAGAACTATCTGGACCATTATTTTAGGGGCGCTGTTGGTT  >  NZ_CP034943/80466‑80541

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.