| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 316,262 | C→A | 6.1% | Q28K (CAA→AAA) | opuAA → | glycine/proline betaine ABC transporter ATP‑binding protein OpuAA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 316,262 | 0 | C | A | 6.1% | 1149.3 / 6.2 | 466 | Q28K (CAA→AAA) | opuAA | glycine/proline betaine ABC transporter ATP‑binding protein OpuAA |
| Reads supporting (aligned to +/- strand): ref base C (266/151); new base A (2/47); total (268/198) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.80e-17 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 469 total aligned reads displayed.
GTGGAATGTTACATAAGTGTTACGGTTATAAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAA‑ATGCTTGCCAA‑CGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATCA > NZ_CP034943/316125‑316399 | tgGAATGTTACATAAGTGTTACGGTTATAAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCaa‑a > 1:967011/1‑140 (MQ=255) gtgtTACGGTTATAAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAA‑ATGCTTGCCAA‑CGGaa > 1:4601983/1‑140 (MQ=255) tgtTACGGTTATAAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAA‑ATGCTTGCCAA‑CGGaaa < 2:1633301/140‑1 (MQ=255) gtTACGGTTATAAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCCGTTCAA‑ATGCTTGCAAA‑CGGAAAg > 2:4287296/1‑140 (MQ=255) ttACGGTTATAAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAA‑ATGCTTGCCAA‑CGGAAAGa > 1:3780262/1‑140 (MQ=255) aCGGTTATAAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAA‑ATGCTTGCCAA‑CGGAAAGACa > 1:1011553/1‑140 (MQ=255) aCGGTTATAAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAA‑ATGCTTGCCAA‑CGGAAAGACa > 1:2781270/1‑140 (MQ=255) ataAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAA‑ATGCTTGCCAA‑CGGAAAGACaaaaaaa > 1:528387/1‑140 (MQ=255) ataAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAA‑ATGCTTGCCAA‑CGGAAAGACaaaaaaa > 2:4202921/1‑140 (MQ=255) ataAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAA‑ATGCTTGCCAA‑CGGAAAGACaaaaaaa > 1:2848550/1‑140 (MQ=255) ataAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAA‑ATGCTTGACAA‑CGGAAAGACaaaaaaa > 2:1764621/1‑140 (MQ=255) aaGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAA‑ATGCTTGCCAA‑CGGAAAGACAAAAAAaga < 1:5396616/140‑1 (MQ=255) aTTTTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAATATAAAAGTCGATAAAGTATCTAAAATTTTTGGGAAAAAAACAAAGAAAGCAGTTCAA‑ATGCTTGCCAA‑CGGAAAGACAAAAAAAGAGATc < 1:697577/140‑1 (MQ=255) aTTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAA‑ATGCTTGCCAA‑CGGAAAGACAAAAAAAGAGATc < 1:4177376/140‑1 (MQ=255) ttGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAA‑ATGCTTGCCAA‑CGGAAAGACAAAAAAAGAGATcc > 1:3414587/1‑140 (MQ=255) tGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAA‑ATGCTTGCCAA‑CGGAAAGACAAAAAAAGAGATCCt > 1:5443819/1‑140 (MQ=255) tGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAA‑ATGCTTGCCAA‑CGGAAAGACAAAAAAAGAGATCCt > 1:2348815/1‑140 (MQ=255) tGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAA‑ATGCTTGCCAA‑CGGAAAGACAAAAAAAGAGATCCt > 2:484080/1‑140 (MQ=255) tttAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAA‑ATGCTTGCCAA‑CGGAAAGACAAAAAAAGAGATCCTGa > 1:1346362/1‑140 (MQ=255) tatGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAA‑ATGCTTGCCAA‑CGGAACGTCAAAAAAAGAGATCCTGAAAGCg > 2:4116403/1‑140 (MQ=255) tatGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAA‑ATGCTTGCCAA‑CGGAAAGACAAAAAAAGAGATCCTGAAAGCg > 1:3330450/1‑140 (MQ=255) tatGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAA‑ATGCTTGCCAA‑CGGAAAGACAAAAAAAGAGATCCTGAAAGCg > 2:4537966/1‑140 (MQ=255) tggtggAAAAATTTTTGTGTATTTTAGAAACCAATTAAGATAAAATTCGAGAAAGTATATAAAATTTTTGGCAAAAAAAAAAACAAACCAGTTAAA‑ATGCTTGCCAA‑CGCAAACACAAAAAAAGATATCCTGAAAGCGAc < 2:3537256/140‑1 (MQ=255) tGGAGGTAAAATATTATTGTAGATTATAACCAAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAAAAAAGAAAGAAGTTCAA‑AGGCTTGCAAA‑CGGAAAGACAAAAAAAGAGAACCTGAAAGCGAc < 2:1087336/140‑1 (MQ=255) tGGAGGGAAAATATGTGTGTAGATGAGAAACAAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAA‑ATGATTGCCAA‑CGGAAACACAAAAAAAGAGATCCTGAAAGCGAc < 2:2912298/140‑1 (MQ=255) aGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTc > 1:2042244/1‑91 (MQ=255) aGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAA‑ATGCTTGCCAC‑CGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCgg > 2:5088776/1‑140 (MQ=255) aGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAA‑ATGCTTGCCAA‑CGGCAAGACCAAAAACGAGCTCCTCAAAGCGACCgg > 2:3927915/1‑140 (MQ=255) aGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAA‑ATGCTTGCCAA‑CGGAAAGACACAAAAAGAGATCCTGAAAGCGACCgg > 1:1087812/1‑140 (MQ=255) aGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAA‑ATGCTTGCCAA‑CGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCgg > 1:5719121/1‑140 (MQ=255) aGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAA‑ATGCTTGCCAA‑CGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCgg > 1:164151/1‑140 (MQ=255) aGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAA‑ATGCTTGCCAA‑CGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCgg > 1:366334/1‑140 (MQ=255) aGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAA‑ATGCTTGCCAA‑CGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCgg > 1:3203033/1‑140 (MQ=255) aGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAA‑ATGCTTGCCAA‑CGGAAAGACAAAAAAAGAGATCCTGAAAGAGAcctg > 1:1900280/1‑138 (MQ=255) aGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGCTCAA‑ATGCTTGCCAA‑CGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCgg > 2:5610706/1‑140 (MQ=255) aGGGAAAATATGAGTGTAGAGGAGAAACCAATTAATATAAAAGTCGAGAAAGTCTCTAAAATATTTGGGAAACAAACAAAGAAAGAAGTTAAA‑ATGCTTGCCAA‑CGGAAAGACAAAAAAAGAGATCCTGAAAGCAAACgg > 1:4366252/1‑140 (MQ=255) ggAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAA‑ATGCTTGCCAA‑CGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGAt > 2:2400925/1‑140 (MQ=255) taaaaTATGAGGGTAGATGAGAAACAAATTAATATAAAAGTCGATAAAGTATATAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAA‑ATGCTTGCCAA‑CGGAAACACAAAAAAAGAGATCCTGAAAGCGACCGGATc < 2:3993342/139‑1 (MQ=255) gAAAATATGAGTGTAGATGATAAACCAATTAAGATAAAAGTCGAGAAAGTATATAAATTTTTTGGGAAACAAACAAAGAAAGCAGTTCAA‑ATGCTTCCCAA‑CGCAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATc < 2:4315150/140‑1 (MQ=255) caaaaTATTCGTTTAGTTGCCAAACCAATTAAGATCAAAGTCGCGAAATTATATAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAA‑ATGCTTGCCCA‑GGTAAACACAAAAAAAGAGATCCTGAAAGCGACCGGATc < 2:730320/139‑1 (MQ=255) atGAGTTTAGATGATAAACCAATTAAGATAAAAGTCGATAAATTATCTAAAATTTTTGGCAAACAAACAAAGAACGCAGTTCAA‑AGGCTTGCCAA‑CGCAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGt < 2:5719121/140‑1 (MQ=255) tgtAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAA‑ATGCTTGCCAA‑CGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTgggg > 1:2223264/1‑140 (MQ=255) tgtAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAA‑ATGCTTGCCAA‑CGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTgggg > 1:3534213/1‑140 (MQ=255) tAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTGGGGAAACAAACAAAGAAAGCAGTTCAA‑ATGCTTGCCAA‑CGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTa > 1:1248300/1‑140 (MQ=255) taaaaaaaTTAATATAAAAGTCTATAAAGTATATAAAATTTTTGGCAAACAAACAAAGAAAGCAGTAAAA‑ATGGTTGCCAA‑CGCAAAGACAAAAAAAGAGAGCCTCAAAGCGACCGGATCAACCGTTGGGGTAAATCAAg < 2:5239768/134‑1 (MQ=255) aaaCCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAA‑ATGCTTTCCAA‑CGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGc > 1:2976016/1‑140 (MQ=255) aaaCCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAA‑ATGCTTGCCAA‑CGGACAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGc > 1:4094890/1‑140 (MQ=255) aaaCCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAA‑ATGCTTGCCAA‑CGGACAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGGTGGGGTAAATCAAGc > 2:5001312/1‑140 (MQ=255) aaaCCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAA‑ATGCTTGCCAA‑CGGAAAGACAAAAAAAGAGATCCTGTAAGCGACCGGATCAACCGTTGGGGTAAATCAAGc > 2:1412190/1‑140 (MQ=255) aaaCCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAA‑ATGCTTGCCAA‑CGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGc > 1:4735120/1‑140 (MQ=255) aaaCCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAA‑ATGCTTGCCAA‑CGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGc > 2:554007/1‑140 (MQ=255) aaaCCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAA‑ATGCTTGCCAA‑CGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGc > 1:4976103/1‑140 (MQ=255) aaCCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAA‑ATGCTTGCCAA‑CGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATc > 1:2536337/1‑135 (MQ=255) aaCCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAA‑ATGCTTGCCAA‑CGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATc < 2:2536337/135‑1 (MQ=255) aCCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAA‑ATGCTTGCCAA‑CGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAg > 1:1741216/1‑140 (MQ=255) aaTTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAA‑ATGCTTGCCAA‑CGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGAtt > 2:822523/1‑140 (MQ=255) aaTAAAGATAAAATTCGAGAAATTATCTAAAATTTTTGGGAAAAAAACAAACAAACCAGTACAA‑ATGCTTGCCAA‑CGCAAAGACAAAAAAAGAGATCCTTAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGAtt < 2:1157308/140‑1 (MQ=255) tAATATAAAAGTCTAAAACTTATATAAAATTTTTGGCAAACAAACAATTAAACCATTTCAA‑ATGCTGCCCAC‑CGCAAACACAAAAAAAGCGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTg < 1:557164/140‑1 (MQ=255) tAAGATAAAACTCGAGACAGTAAATAAAATGTTGGGCAACAAAACAAAGAAAGAATTACAA‑ATGCTGCCCAA‑CGCAAACAAAAAAAAAGAGACCCTCACAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTg < 1:1450374/140‑1 (MQ=255) tAAGATAAAACTCGAGAAATTATCTAAAATTTTTGGCAAACAAACAAAGAAAGCAGTTAAA‑ATGCTTGCCAA‑CGCAAACACAAAAAAATAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTg < 2:3875373/140‑1 (MQ=255) tAACATAAAAGTCGACAAAGTATCTAAAATTTTTGGCAAACAAACAAACAAAGCAGTACAA‑ATGC‑TGCCAACCGCAAACACAAAAAAAGACATCCTCAACGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTg < 1:484080/140‑1 (MQ=255) ataaaaaaGTCGATAACTTATCAAAATTTTTTGGCAAAAAAAAAAACAAA‑CCTTTCAATATGTTTCCCAC‑CGCAAAGAAAAAAAAAGAGATCCTCAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGAt < 1:578266/136‑1 (MQ=255) ataTAAACGTCTAGAAAGTATCTAAAATTTTTGGCAAAAAAAAAAATAAAGCAGTTAAA‑ATGCTTGCCAC‑CGGAAACAAAAAAAAAGAGATCCTCAACGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGAt < 2:5125380/138‑1 (MQ=255) aGATAAAAGTCGACAAAGTATCAAAATTTTTTGGTAAACAAACAAAGAACCCAGTTAAA‑ATGCTTGCCAC‑CGGAAAGACAAAAAAAGAGATCCTCAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGAt < 2:4892600/140‑1 (MQ=255) aaaaGTAGAGAAATTATCTAAAATTTTTGGGAAACAAAAAAAGAAATAATTTCAA‑ATTATTGCAAA‑CGTAAAGAAAAAAAAACATATAATGAAAGCGACCTGATCAACCTTTGGGTTAAATCAATCAGATTTTGAttttt > 2:4090615/1‑136 (MQ=255) aaaGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAAAAAAGAAAGCAGTTCAA‑ATGCTTGCCAA‑CGGAAAGACAAAAAAAGAGATCCGGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGtata < 2:640534/140‑1 (MQ=255) ttagataaaTTATATAAAATTTTTGGAAAAAAAACAAAGAAAGCAGTTAAA‑ATGCTTGCCAA‑CGTAAATAAAAAAAAATAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATatga < 2:3289637/134‑1 (MQ=255) cGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAA‑ATGCTTGCCAA‑CGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATatgatg > 1:3862620/1‑140 (MQ=255) gacaaaGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAA‑ATGCTTGCCAA‑CGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATgg < 2:3203033/137‑1 (MQ=255) acacattATCTAAATTTTTTGGGAAAAAAAAAAATAATGCATTTAAA‑ATGCTTGCCAA‑CGTAACGAAAAAAAAATAGATCCTAAACGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGt < 1:405200/134‑1 (MQ=255) aaaGTATATAAAATTTTTGGCAAAAAAAAAAAGAAAGCAGTTAAA‑ATGCTTGCCAA‑CGCAAACACAAAAAAAGAGATCCTTAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTga < 1:4552788/140‑1 (MQ=255) attATCTAAAATTTTTGGGAAACAAAAAAACAACCCTGTTCAA‑AGGCTTGCCAA‑CGTAAACACAAAAAAATACATCCTCAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTgaga < 2:2052488/138‑1 (MQ=255) aGTATCTAAAATTGTTGGCAAACAAAAAAATAAAGCAGTTCAA‑ATGCTTGCCAA‑CGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTgaga < 2:5377056/140‑1 (MQ=255) atAAATTTTTTGGGAAAAAAACAAACAACGCATTTAAA‑AGGGTTGCCAA‑CTCAAATAAAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATAttt < 1:3265348/139‑1 (MQ=255) atAAATTTTTTGGCAAAAAAAAAAAGAAAGCTTTTCAA‑TTGCTTGCAAA‑CGTAAACAAAAAAAAAGAGATCCTTAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATAttt < 1:534076/139‑1 (MQ=255) tttttGGGAAACAAACAAAGAAAGCCGTTCAA‑ATGCTTGCCAA‑CGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGtcatc < 2:1035067/140‑1 (MQ=255) ttttGGTAAAAACACAAAGCTACCACTTATA‑TTGATTGCCAA‑CCCAAATAAAAAAAAAGAGCTCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATCTGATGGTGAGATATTTGtcatca < 2:4395652/140‑1 (MQ=255) ttttGGGAAACAAACAAAGAAAGCAGTTCAA‑ATGCTTGCCAA‑CGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGtcatca > 2:1817591/1‑140 (MQ=255) ttttGGGAAACAAACAAAGAAAGCAGTTCAA‑ATGCTTGCCAA‑CGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGtcatca > 2:4680811/1‑140 (MQ=255) tttGGTAAAAAAACAAATAAAGCTGTACAA‑ATGCTTGCAAC‑CGGAAAGAAAAAAAATGAGATCCTGAACGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTcatcat < 1:3915366/140‑1 (MQ=255) tttGGGAAACAAACAAAGAAAGCAGTTCAA‑ATGCTGGCCAA‑CGGAAAGACAAAAAAAGAGAGCATGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTcatcat < 2:371585/140‑1 (MQ=255) tttGGCAAACAAACAAACAAAGCATTTCAA‑AGGCTTGCCAA‑CGTAAAGACAAAAAAAGAGATCCTCAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTcatcat < 1:4882459/140‑1 (MQ=255) tttGGCAAACAAACAAACAAACCTGTCAAA‑ATCCTTCCAAA‑CGCAAACACAAAAAAAGAGATCCTCAACGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTcatcat < 1:832235/140‑1 (MQ=255) tttGGCAAAAAAACAAAGAACGCATTTCAA‑TTGCTTCCCAA‑CGCAAACAAAAAAAAAGAGAGCCTCAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTcatcat < 1:427373/140‑1 (MQ=255) tttGCGAAAAAAACAAAGAAAGATGTTAAA‑CTGCTTGCAAA‑CGCAAACACAAAAAAAGATAACCTCAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTcatcat < 1:3112357/140‑1 (MQ=255) tgtGGGAAACAAACAAAGAAAGCAGTTCAA‑ATGCTTGCCAA‑CGGAAAGACAAAAAAAGAGACCCTGAACGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTcatcat < 2:3043380/138‑1 (MQ=255) ttGGGAAACAAACAAAGAAAGCAGTTCAA‑ATGCTTGCCAA‑CGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTCAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATg > 2:2152407/1‑140 (MQ=255) ttGGCAAACAAACAAACAAAGCCCTTCAA‑AGGCTGCCCAC‑CGCAAACACAAAAAAAGAGAGCCTGAACGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATg < 1:5088776/140‑1 (MQ=255) tGGCAACCAAACAAACAACCCCGGTCAA‑ATGCTTCCCAA‑CGCAAAGACAAAAAAAGAGATCCTGACAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATgg < 2:3414587/140‑1 (MQ=255) tGGCAAAAAAAAAAACAACCCATTTCAA‑ATGCTTGCCAA‑CGTAAAGAAAAAAAAACAGATCCTCAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATgg < 1:467435/140‑1 (MQ=255) ggAAACAAACAAAGAAAGCAGTTCAA‑ATGCTTGCCAA‑CGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGt < 2:366334/140‑1 (MQ=255) ggAAACAAACAAAGAAAGCAGTTCAA‑ATGCTTGCCAA‑CGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGt < 2:2811863/140‑1 (MQ=255) ggAAACAAACAAAGAAAGCAGTTCAA‑ATGCTTGCCAA‑CGGAAAGACAAAAAAAGAGAGCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGt < 2:3780262/140‑1 (MQ=255) gcaaacaaacAAAGAAAGCAGTTCAA‑ATGCTTGCCAA‑CGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGt < 2:3812729/138‑1 (MQ=255) aaaaacaaaGAAAGCAGTTCAA‑CTGCTTGCCAA‑CGGAAACACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTAt < 2:541093/138‑1 (MQ=255) aaaagaaagCAGTTCAA‑ATGCTTGCCAA‑CGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAggg < 2:59294/139‑1 (MQ=255) aaaagaaacCAGTTCAA‑ATTCTTGCAAA‑CGGAAAGAAAAAAAAACATATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAggg < 2:1973258/139‑1 (MQ=255) aagaagTTCAA‑TTGCTTGCCAA‑CGGAACCAAAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGt < 1:3968887/140‑1 (MQ=255) agCAGTTCAA‑ATGCTTGCCAA‑CGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTa > 2:2659300/1‑140 (MQ=255) gTTCAA‑ATGCTTGCCAA‑CGGAAAGAGAACAAAAGAGATCCTGAAAGCGACCGGATCAACCGGTGGGGTAAATCAAGCAGATGTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAACTc > 1:5137063/1‑140 (MQ=255) | GTGGAATGTTACATAAGTGTTACGGTTATAAGGATTGTTTAATATGGAGGGAAAATATGAGTGTAGATGAGAAACCAATTAAGATAAAAGTCGAGAAAGTATCTAAAATTTTTGGGAAACAAACAAAGAAAGCAGTTCAA‑ATGCTTGCCAA‑CGGAAAGACAAAAAAAGAGATCCTGAAAGCGACCGGATCAACCGTTGGGGTAAATCAAGCAGATTTTGATGTATATGATGGTGAGATATTTGTCATCATGGGTCTATCAGGGAGCGGTAAATCA > NZ_CP034943/316125‑316399 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |