| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 112,586 | G→T | 7.4% | intergenic (+264/‑40) | gltX → / → cysE | glutamate‑‑tRNA ligase/serine O‑acetyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 112,586 | 0 | G | T | 7.4% | 1314.1 / 20.8 | 517 | intergenic (+264/‑40) | gltX/cysE | glutamate‑‑tRNA ligase/serine O‑acetyltransferase |
| Reads supporting (aligned to +/- strand): ref base G (146/314); new base T (55/2); total (201/316) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.15e-22 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 521 total aligned reads displayed.
TTCGAAATCAGTATTCAAAGGCGGCCGCCGCCGTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑GGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTCCGGTTTAC > NZ_CP034943/112448‑112725 | gAAATCAGTATTCAAAGGCGGCCGCCGCCGTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTg < 2:2094047/140‑1 (MQ=255) gAAATCAGTATTCAAAGGCGGCCGCCGCCGTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTg < 1:174160/140‑1 (MQ=255) aGTATTCAAAGGCGGCCGCCGCCGTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑gg < 1:4067610/140‑1 (MQ=255) aGTATTCAAAGGCGGCCGCCGCCGTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑gg < 2:1116486/140‑1 (MQ=255) ggcCGCCGCCGTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑GGCAATCAAATagag < 2:1037129/140‑1 (MQ=255) ggcCGCCGCCGTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑GGAAATCAAATagag < 1:3904912/140‑1 (MQ=255) gccgccgccGTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGACCCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAATA‑GGAAATCAAATAtaga > 1:3703434/1‑140 (MQ=255) gccgccgccGTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATTCAGAGGCGC‑TTTTTTTATTGGGTGTAGA‑GGAAATGAAATagaca > 2:4047712/1‑138 (MQ=255) gccgccgccGTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑GGAAATc < 2:5411888/131‑1 (MQ=255) gccgccgccGTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑GGAAATc < 2:2719960/131‑1 (MQ=255) gccgccgccGTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑GGAAATCAAATAgaga > 1:3324071/1‑140 (MQ=255) ccgccgccgTTACAGGCTTAAGTTGGGAGAGCATAAGTATGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTATCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑GGAAATCACATAGAGaa < 2:2630574/140‑1 (MQ=255) ccgccgcagTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑GGAAATCAAATAGAGaa < 2:2177148/140‑1 (MQ=255) cgccgccgTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑GGAAATCAAATAGAGAAg < 2:398317/140‑1 (MQ=255) ttACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑GGAAATCAAATATAGAAGTGGGGGGa > 2:126237/1‑140 (MQ=255) cAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑GGAAATCAAATAGAGAAGTGGGGGGAAGc < 2:4148875/140‑1 (MQ=255) cAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑GGAAATCAAATAGAGAAGTGGGGGGAAGc < 1:1246066/140‑1 (MQ=255) aGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑GGAAATCAAATAGAGAAGTGGGGGGAAGCa < 1:1878722/140‑1 (MQ=255) ggCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGAGGTTTAAGCGTCTCTGTCATTTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑GGAAATCAAATAGAGAAGTGGGGGGAAGCAt < 2:1771994/140‑1 (MQ=255) gTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑GGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGtttt < 1:4104326/140‑1 (MQ=255) gagaGCAGAATTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑GGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGa < 1:3953119/140‑1 (MQ=255) gagaGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑GGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGa < 1:859274/140‑1 (MQ=255) gagaGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑GGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGa < 1:4541761/140‑1 (MQ=255) agCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑GGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATg < 2:642817/140‑1 (MQ=255) aGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑GGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTc < 1:2047884/140‑1 (MQ=255) aGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑GGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTc < 1:4418506/140‑1 (MQ=255) aaGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑GGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTc > 2:5728330/1‑138 (MQ=255) gTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑GGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAaag < 2:3324071/140‑1 (MQ=255) cttcTTTTCAAACAGAGTGGAACCGCGCGTTTTAAGCGTATCTGTAATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑GGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAaagaa < 2:2500938/137‑1 (MQ=255) cTGCTTTTCAAACAGAGTGGAACCGCGCGTTTTAAGCGTCTCTGTCATGTGTTCATGCTGAGGCGC‑TTTTTTTATTGGGTGAAGC‑GGAAAGCAAATAGAGAAGTGGGGGGACGCATGTGTTTTTTAGAATGCTCAaagaa < 1:3650363/140‑1 (MQ=255) cTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑GGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAaagaa < 1:183275/140‑1 (MQ=255) cTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑GGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAaagaa < 1:1519462/140‑1 (MQ=255) cTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑GGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAaagaa < 1:2824374/140‑1 (MQ=255) cTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑GGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAaagaa < 1:1666306/140‑1 (MQ=255) cTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑GGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAaagaa < 1:4297032/140‑1 (MQ=255) cTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑GGAAATCAAATAGAGAAGTGGGGGGAACCATGTGTTTGTTAGAATGCTCAaagaa < 1:4630307/140‑1 (MQ=255) cTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTAGTGGGTGAAGA‑GGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAaagaa < 2:5678413/140‑1 (MQ=255) tGCTTTTCAAACAGAGTGGACCCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTTGGGGTAGA‑GGTAATCAAATATAGAAGTGGGGGGCAGCATGTGTTTTTTATAATTCTCAaataaa > 1:4516518/1‑139 (MQ=255) tGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑GTTTTTTATTTGGTGAAGA‑GGAAATCAAATAGAGAAGTTGGGGGACGCCGGTGTTTTTTTTAAATCTCAaagaag > 1:2722984/1‑140 (MQ=255) tGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑GTTTTTTATTGGGTGGAGG‑GGGAAACCAATAGAGAAGGGGGGGGGAGCATGTGTTTTTTTGTATTCTCAaagaag > 1:1927913/1‑140 (MQ=255) gattttAAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGAGC‑TTTTTTTATTGGGTGAAGA‑GGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAagaaga < 1:5440837/138‑1 (MQ=255) gCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑GGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAagaaga < 1:5098966/140‑1 (MQ=255) gCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑GGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAagaaga < 1:525860/140‑1 (MQ=255) gCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑GGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAagaaga < 1:708337/140‑1 (MQ=255) gCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTAATGCCGAGTCGC‑TTTTTTTAGTTGGTGAAGA‑GGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAagaaga < 2:4839089/140‑1 (MQ=255) gCTTTTCAAACAGAGTGGAACCGCGCGGTGTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑GGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAagaaga < 2:2309211/140‑1 (MQ=255) cTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑GGTAATCAAATCTAGAAGTGGGGGGAAGCATGTGTGTTTTAGAATGCTCAAACAAGAc > 2:1423663/1‑140 (MQ=255) cTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑GGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGAc < 1:4695676/140‑1 (MQ=255) cTTTTCAAACAGAGGGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTAATGGGTGAAGA‑GGAAATAAAAAAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTGAAAGAAAAc > 2:1997129/1‑140 (MQ=255) cAAACAGAGTGGAACCGCGCGGTGTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGA‑TTTTTTTATTGGGTGAAGA‑GGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCCCAAAGAAGACATTGa < 2:3712427/140‑1 (MQ=255) aaCAGCGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTGTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑GGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATa < 1:3123116/140‑1 (MQ=255) aaCAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑GGAACTCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATa < 2:2958181/140‑1 (MQ=255) aaCAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑GGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATa < 1:564014/140‑1 (MQ=255) aaCAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑GGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATa < 1:5590698/140‑1 (MQ=255) aaCAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑GGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATa < 2:4660921/140‑1 (MQ=255) aaCAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑CGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATa < 1:5768382/140‑1 (MQ=255) aCAGTGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGCTTTTTTTTATTGGGTGAAGA‑GGAAAACACATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATa < 1:1015190/140‑1 (MQ=255) cAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑GGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACa < 2:480134/140‑1 (MQ=255) agagTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑GGAAATCCAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTATAATGCTCAAATAAGAAATTTATACAg > 2:4414831/1‑140 (MQ=255) agTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTTGGTGAAGA‑GGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTTATACAgtg > 2:3578639/1‑140 (MQ=255) gTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑GTTTTTTTTTGGGTGTATA‑GGAAAAAAAAAATAGTAGTGGGGGGAAGCACTTGTTTTTTATTATTCTCAAAAAAAAAAATTATAAAgtgt > 1:2839895/1‑140 (MQ=255) tGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑GGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGtt < 1:2593778/140‑1 (MQ=255) aCCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑GGAACTCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGAt < 2:84211/140‑1 (MQ=255) cgcgGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTTGGTGTCGC‑GGGCAACGAATATAGAGCTGGGGGGCAGCATGGGTTTTTTATTATGGTCAAAGCAGACAGTGTTACACTGTTGGagaaat > 1:3456339/1‑135 (MQ=255) cgcgGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGTAGA‑GGCACTCAAATAGAGAAGGGGGGGGACGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATCAGGTGTTCGATCAAg > 2:3096455/1‑140 (MQ=255) cgcgGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑GGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATTCTCATAGAAGAAATTGATAAAGTGTTCGATCaat > 2:5479274/1‑139 (MQ=255) cgcgGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑GGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAagaaga > 2:1908307/1‑117 (MQ=255) cgcgGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑GGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACACTGTTAGATCAAg > 2:3208530/1‑140 (MQ=255) cgcgGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGGGAAGA‑GGAAATCAAATATAGAACTGGGGGGAAGCAAGTGTTTTTTAGAATGGTCAAAGAAGACAATGATACACTGTTAGATCAAg > 2:778638/1‑140 (MQ=255) cgcgGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑GTTTTTTATTGGGTGAAGA‑GGAAAAAAAATATAGAAGTGGGGGGGAGCATGTGTTTTTTATAATGCTCAAAGAAGACATTGATAAAGTGTTGGATCAAg > 1:3048327/1‑140 (MQ=255) ggTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑GGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATc < 2:1182584/140‑1 (MQ=255) aaGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑GTTTTTTATTTGGTGGATA‑GGAAATCAAAAAGAGAAGGGGGGGGAACCATGTGTTTTTTATAATGCTCACAGAAGACATTGATACAGTGTTCGATCAATATGgagca > 1:3819362/1‑140 (MQ=255) cGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑GGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAgcagca < 1:4931568/140‑1 (MQ=255) tctcTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑GGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCaag < 1:772569/140‑1 (MQ=255) tctGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTTTTGGGTGAAGATGGAAAGC‑AATAGAGGAGTGGGGGGGAGCCTGTGTTTTTTATAAAGGTCAAAAAAAACAATGATACAGTGTTCGATCAAGATACCGCCGCaaaga > 2:4295712/1‑137 (MQ=255) tctGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGTAGA‑GGAAATCAAATAGAGAAGTGGGGGGAAGGATGTGTTTTTTATAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCaagaa > 2:2769936/1‑140 (MQ=255) tctGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑GGAAATGAAATAGGGAAGTGGGGGGACGCCTGTGTTTTTTAGAATGGTCCAAGAAGACATTGATCCAGTGTTCGATCATGATCCAGCAGCgagaa > 2:5174439/1‑140 (MQ=255) tctGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑GGAAATCAAATAGATAAGTGGGGGGAAGCATGTGTTTTTTATAATGCTCAAAGAAGACATTGATACAGTGTTAGATCAAGATGCAGCAGCaagaa > 2:3850402/1‑140 (MQ=255) tctGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑GGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTTATACAGTGTTCGATAAAGATACAGCACcaacaa > 2:5081363/1‑140 (MQ=255) tctGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGGGGAGA‑GGAAATAAAATAGAGAAGTGGGGGGAAGCCTGTGTTTTTTATAATTCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCaagaa > 2:347593/1‑140 (MQ=255) tctGTCATGTTTTCATGCAGAGGCGC‑GTTTTTTATTTGGTGTAGA‑GGGAAACAAATAGAGAAGTGGGGGGGAGCATGTGTTTTTTTGAATTCTCAAAGAAGACAATGATACACTGTTCGATAAAGATACAGCAGCaagaa > 1:1079286/1‑140 (MQ=255) tctGGCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGGGCACA‑CGAAATCAAATAGCGAAGTGGGGGGAAGCATGGGTTTTTTAGAATGCTCAAATAAGACCTTGATACAGTGTTCGATCCAGATCCAGCCGCaagaa > 2:163565/1‑140 (MQ=255) ctGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑GGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCaagaag < 1:1401771/140‑1 (MQ=255) ctGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑GGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCaagaag < 1:2162861/140‑1 (MQ=255) ctGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑GGAAATCAAAGAGAGAAGTGGGGGGAAGCATGTGTTGTTTACAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCaagaag < 1:338933/140‑1 (MQ=255) ctGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑GGAAAACAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCaagaag < 2:3912127/140‑1 (MQ=255) tGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑GGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTATAATGCTCAAAGAAGACATTTTTACAGTGTTCGATCAAGATACAGCAGCAACAAGTTAttt > 2:1537240/1‑140 (MQ=255) ttttCATGCAGAGGCGC‑TTTTTTTATTGGGTGTAGA‑GGAAAAAAAAAATAGTAGTGGGGGGGAGCATGTGTTTTTTTGAATTCTCAAAGAAAAAAATTATAAAGTGTTAGATAAAGATACACCCGCAAGAAGTTAttttt > 1:2988601/1‑139 (MQ=255) ttttCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑GGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAagaaga > 2:341610/1‑93 (MQ=255) ttCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑GGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGaa < 1:63720/140‑1 (MQ=255) aTGCAGAGGCGC‑TTTTTTTATTGGGTGTAGA‑GGCAATCAAATAGAGTAGTGGGGGGAAGGCTGTGTTTTTTAGAATGCTGAAAGAAGACATTGATAAAGTGTTAGATCAACATCCAGCAGCACGAAGTTATtgtgtcgtt > 2:3494558/1‑135 (MQ=255) aTGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑GGCAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTTATACAGTGTTCGATCAAGATCCAGCAGCCAGAAGGTATTTTGAAGTg > 2:4959547/1‑140 (MQ=255) agGCGC‑TTTTTTTATTGGGTGAAGA‑GGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTa > 2:5543199/1‑140 (MQ=255) gcgc‑TTTTTTTATTGGGTGAAGA‑GGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAAc < 1:2415832/140‑1 (MQ=255) cgc‑TTTTTTTCTTGGGTGAAGA‑GGAAATCAAATAGAGAAGTGGGGGGACGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACt < 1:420787/140‑1 (MQ=255) tattttATTGGCTGAAGA‑CGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTAtt < 2:905039/138‑1 (MQ=255) ttattATTGGGTGAAGA‑GGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTc < 1:5043758/137‑1 (MQ=255) aTTGGGTGCAGA‑GGAAATCACCTAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCGCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTCTTTTGAAGTGATTTTAACTTATTCCGGtt < 1:4747076/140‑1 (MQ=255) tGGGTGAAGA‑GGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTCCGGTTTa < 2:4516592/140‑1 (MQ=255) ggggTGAAGA‑CGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTCCGGTTTa < 1:3545583/139‑1 (MQ=255) | TTCGAAATCAGTATTCAAAGGCGGCCGCCGCCGTTACAGGCTGAAGTTGGGAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGAACCGCGCGGTTTAAGCGTCTCTGTCATGTTTTCATGCAGAGGCGC‑TTTTTTTATTGGGTGAAGA‑GGAAATCAAATAGAGAAGTGGGGGGAAGCATGTGTTTTTTAGAATGCTCAAAGAAGACATTGATACAGTGTTCGATCAAGATCCAGCAGCAAGAAGTTATTTTGAAGTGATTTTAACTTATTCCGGTTTAC > NZ_CP034943/112448‑112725 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |