Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NZ_CP034943 2,034,593 C→A 16.1% intergenic (‑259/‑135) EO946_RS10175 ← / → EO946_RS10180 UPF0715 family protein/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0349432,034,5930CA16.1% 453.9 / 29.2 220intergenic (‑259/‑135)EO946_RS10175/EO946_RS10180UPF0715 family protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base C (142/36);  new base A (2/40);  total (144/76)
Fisher's exact test for biased strand distribution p-value = 2.48e-20
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 223 total aligned reads displayed.

TTTAATGGTGGCTGTTATGTTTACATGCAGATTCCTTCCCTAACCTGTCCTTATCTCCGCTTCTTTTTCAAACGTTTT‑GTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAAAA‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATAAGAAGAGTTGATATTCAACACTTTTCGTAAAGGGGTGACACCAATG  >  NZ_CP034943/2034454‑2034730
                                                                                                                                            |                                                                                                                                          
tttAATGGTGGCTGTTATGTTTACATGCAGATTCCTTCCCTAACCTGTCCTTATCTCCGCTTCTTTTTCAAACGTTTT‑GTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTc                                                                                                                                            >  2:1105705/1‑140 (MQ=255)
tttAATGGTGGCTGTTATGTTTACATGCAGATTCCTTCCCTAACCTGTCCTTATCTCCGCTTCTTTTTCAAACGTTTT‑GTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTc                                                                                                                                            >  2:2201324/1‑140 (MQ=255)
   aaTGGTGGCTGTTATGTTTACATGCAGATTCCTTCCCTAACCTGTCCTTATCTCCGCTTCTTTTTCCAACGTTTT‑GTACAGTGTTTCCCAGCTGTAGTCAGCTTCTTCATATACGACGTGTGCTAATATACTGTTTCaaa                                                                                                                                         >  2:3114404/1‑140 (MQ=255)
   aaTGGTGGCTGTTATGTTTACATGCAGATTCCTTCCCTAACCTGTCCTTATCTCCGCTTCTTTTTCAAACGTTTT‑GTACAGTGTTTCCCAGCTTTAGTCAGCTTCTGCATATACGAAGTGTGCTAATAAAATGTTTCaaa                                                                                                                                         >  2:495322/1‑140 (MQ=255)
         ggCTTTTTTGTTTACATGCATTTCCCTTCCCTAACCTGTCCTTATCGCCTTTTATTTTCAAAATTTTTT‑TTACTGTGTTTCCCAGCTTTAGTACGCTTTTTCATATACGATTTGTGATAATAAATTGTTTCAAAA‑ACGAc                                                                                                                                  <  2:2377696/140‑1 (MQ=255)
         ggCTTTTATTTTTACCTGCTTATTCTTCCCCTAACCTCTCTTTATCACCGATTCTTTTTCAAACGTTTT‑GTAACGTTTTTCCACGATTAAGTCAGATTATTAATATACTCAGTGTGCTAATAAATTGTTAAAAAA‑ACGAc                                                                                                                                  <  2:1357839/140‑1 (MQ=255)
          gCTGTTATGTTTACATGCAGATTCCTTCCCTAACCTGTCCTTATCTCCGCTTCTTTTTCAAACGTTTT‑GTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAAAA‑ACGaac                                                                                                                                 >  1:5406812/1‑138 (MQ=255)
          gCTGTTATGTTTACATGCAGATTCCTTCCCTAACCTGTCCTTATCTCCGCTTCTTTTTCAAACGTTTT‑GTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAAAA‑ACGAcc                                                                                                                                 >  1:1703348/1‑140 (MQ=255)
          gCTGTTATGTTTACATGCAGATTCCTTCCCTAACCTGTCCTTATCTCCGCTTCTTTTTCAAACGTTTT‑GTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAAAA‑ACGAcc                                                                                                                                 >  1:5664820/1‑140 (MQ=255)
          gCTGTTATGTTTACATGCAGATTCCTTCCCTAACCTGTCCTTATCTCCGCTTCTTTTTCAAACGTTTT‑GTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAAAA‑ACGAcc                                                                                                                                 >  1:604986/1‑140 (MQ=255)
          gCTGTTATGTTTACATGCAGATTCCTTCCCTAACCTGTCCTTATCTCCGCTTCTTTTTCAAACGTTTT‑GTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAAAA‑ACGAcc                                                                                                                                 >  1:1436668/1‑140 (MQ=255)
          gCTGTTATGTTTACATGCAGATTCCTTCCCTAACCTGTCCTTATCTCCGCTTCTTTTTCAAACGTTTT‑GTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAAAA‑ACGAcc                                                                                                                                 >  2:3880265/1‑140 (MQ=255)
          gCTGTTATGTTTACATGCAGATTAATTCCCTAACCTGTCCTTATCTCCGCTTCTTTTTCAATCGTTTT‑GTAAAGTGTTTAGCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATTTTTCTAAA‑ACGaac                                                                                                                                 >  2:1436923/1‑138 (MQ=255)
               tATGTTTACATGCAGATTCCTTCCCTAACCTGTCCTTATCTCCGCTTCTTTTTCAAACGTTTT‑GTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAAAA‑TCGACCGGGGt                                                                                                                            >  2:2577917/1‑140 (MQ=255)
                      aCATGCAGATTCCTTCCCTAACCTGTCCTTATCTCCGCTTCTTTTTCAAACGTTTT‑GTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAAAA‑ACGACCGGGGTAAAGcct                                                                                                                     >  1:1826183/1‑138 (MQ=255)
                      aCATGCAGATTCCTTCCCTAACCTGTCCTTATCTCCGCTTCTTTTTCAAACGTTTT‑GTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAAAA‑ACGACCGGGGTAAAGCTg                                                                                                                     >  1:389008/1‑140 (MQ=255)
                       attGCAGATTCCTTCCCTCCCCTGTCCTTATGTCCGTTTATTTTTCAAACTTTTT‑GTACAGTTTTTCCAAGCTTTAGTCTGCTTCTTCATATACTATTTGTGATAATAAAATTTTTCAAAA‑ACGACCGGGGTAAAGCTGa                                                                                                                    <  2:5481620/138‑1 (MQ=255)
                        aTGCAGATTCCTTCCCTAACCTGTCCTTATCTCCGCTTCTTTTTCAAACGTTTT‑GTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAAAA‑ACGAGCGGGGTAAAGCTGAc                                                                                                                   >  2:3026138/1‑140 (MQ=255)
                        aTGCAGATTCCTTCCCTAACCTGTCCTTATCTCCGCTTCTTTTTCAAACGTTTT‑GTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAAAA‑ACGACCGGGGTCAAGCTGAc                                                                                                                   >  2:4797125/1‑140 (MQ=255)
                           cAGATTCCTTCCCTAACCTGTCCTTATCTCCGCTTCTTTTTCAAACGTTTT‑GTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAAAA‑ACGACCGGGGTAAAGCTGActct                                                                                                                >  2:2138059/1‑140 (MQ=255)
                             gATTCCTTCCCTAACCTGTCCTTATCTCCGCTTCTTTTTCAAACGTTTT‑GTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAAAA‑ACGACCGGGGTAAAGCTGActctct                                                                                                              >  1:38109/1‑140 (MQ=255)
                                  cttccCTACCCTGACATTATATCCGTTAATTTTAAAACCTTTTT‑TTACTTTTTTACCCCCCTTTAGACTGATTGTACATATACCATGTTTGATAATAAATTTTTTAAAAC‑ACGAACGGGGTAAAGCTGACTCTCTTGTCt                                                                                                         <  2:2652783/140‑1 (MQ=255)
                                        tAACCTGTCCTTATCTCCGCTTCTTTTTCAAACGTTTT‑GTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATTTTTCAAAA‑ACGACCGGGGTAAATCTGACTCTCTTGTCTTAATgg                                                                                                   >  1:1897456/1‑140 (MQ=255)
                                        tAACCTGTCCTTATCTCCGCTTCTTTTTCAAACGTTTT‑GTACAGTGTTTCCCAGCTGTAGTCAGCTTCTTCAGATACGAAGTGTGCTAATAAAATGTTTCAAAA‑AAGACCGGGGTAAAGCTGACTCTCTTGTCTTAATgg                                                                                                   >  1:771616/1‑140 (MQ=255)
                                               tCCTTATCTCCGCTTCTTTTTCAAACGTTTT‑GTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTCATAAAATGTTTCAAAA‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAagag                                                                                            >  1:4079578/1‑140 (MQ=255)
                                               tCCTTATCTCCGCTTCTTTTTCAAACGTTTT‑GTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAAAA‑ACGACCGGGGTAAAGCTGACTCTCTTTTATTAATGGGAAagag                                                                                            >  2:3588619/1‑140 (MQ=255)
                                               tCCTTATCTCCGCTTCTTTTTCAAACGTTTT‑GTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAAAA‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAagag                                                                                            >  1:3676822/1‑140 (MQ=255)
                                               tCCTTATCTCCGCTTCTTTTTCAAACGTTTT‑GTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAAAA‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAagag                                                                                            >  2:12483/1‑140 (MQ=255)
                                               tCCTTATCTCCGCTTCTTTTTCAAACGTTTT‑GTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAAAA‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAagag                                                                                            >  1:3938093/1‑140 (MQ=255)
                                               tCCTTATCTCCGCTTCTTTTTCAAACGTTTT‑GTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAAAA‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAagag                                                                                            >  1:3293462/1‑140 (MQ=255)
                                               tCCTTATCTCCGCTTCTTTTTCAAACGTTTT‑GTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAAAA‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAagag                                                                                            >  1:5622253/1‑140 (MQ=255)
                                               tCCTTATCTCCGCTTCTTTTTCAAACGTTTT‑GTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAAAA‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAagag                                                                                            >  2:3731137/1‑140 (MQ=255)
                                               tCCTTATCTCCGCTTCTTTTTCAAACGTTTT‑GTACAGTGTTTCCCAGCTTTAGTCAGCTGCTTCATATACGAAGTGTGCTAATAAAATGTTTCAAAA‑ACGACCGGGGTAACGCTGACTCTCTTGTCTTAATGGGCAagag                                                                                            >  1:1464463/1‑140 (MQ=255)
                                                    aTCTCCGCTTCTTTTTCAAACGTTTT‑GTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTACTAAAATGGTTCAAAA‑ACGACCGGGGTAAAGCTGACTCTCTTGGCTTAATGGGAAAGAGTCAAc                                                                                       >  1:3139442/1‑140 (MQ=255)
                                                         cGCTTCTTTTTCAAACGTTTT‑GTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAAAA‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGaaaa                                                                                  >  1:5254098/1‑140 (MQ=255)
                                                         cGCTTCTTTTTCAAACGTTTT‑GTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAAAA‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGaaaa                                                                                  >  1:1359757/1‑140 (MQ=255)
                                                         cGCTTCTTTTTCAAACGTTTT‑GTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAAAA‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGaaaa                                                                                  >  1:2658775/1‑140 (MQ=255)
                                                         cGCTTCTTTTTCAAACGTTTT‑GTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGGGCTAATAAAATGTTTCAAAA‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGaaaa                                                                                  >  2:2486231/1‑140 (MQ=255)
                                                          tattttttttCAACCTTTTT‑GTACCGTTTTTCCCCTCTTTTGTCAGTTTCTTAATATACTATGTTTGATAATAAATTGTTTCAAAC‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGaaaaa                                                                                 <  2:407006/135‑1 (MQ=255)
                                                          gCTTATTTTTAAAACTTTTT‑TAACTTTGTTTCCCAGCTTTAGTCAGGTTCTTAATACAGGATGTGTTCTAATAAACTTTTTAAAAA‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGaaaaa                                                                                 <  2:2703722/140‑1 (MQ=255)
                                                           cttcttTTTCAAACGTTTT‑GTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATAAGAAGTGTGGTAATAAAATGTTTCATAA‑TCGACCGGGGTAAAGCTGTCTCTCTTGTCTTATTGGGAAAGAGTCAACGaaaaaa                                                                                >  1:3366459/1‑140 (MQ=255)
                                                               tttttAAAAGTTTTT‑TTACTGTTTTCCCCAGTTTTAGTCAGTTTATTAATAAACTATGTTTGATAATAAAATGTTAAAAAA‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCg                                                                            <  2:4890109/140‑1 (MQ=255)
                                                                      accttttt‑ttACTGTGTTTCCCACCTTTATTCTGCTAAGTCATAAACGATGGTTGATAATAAAATGTTTAAAAA‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCgaatgaat                                                                     <  2:1440314/136‑1 (MQ=255)
                                                                       aCGTTTTGGTACCTTTTTTCCCAGCTTTCTACAGGTTATTCATAACCGAGGTGTCCTAAAAAAATTTAAAAAAC‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCgaatgaat                                                                     <  1:4744561/140‑1 (MQ=255)
                                                                        cGTTTT‑TTACAGGGTTCCCCCGCTTTATTCAGCTTCTTCATATACTAAGTGTGATAATAAAATTTTACAAAA‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATAc                                                                   <  2:4695524/140‑1 (MQ=255)
                                                                        cGTTTT‑GTACGGTTGTGCCCATGTTTAGTCCGCTTTTTATTATACGTATTGTGCTAATAAATTGTTTCAAAA‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATAc                                                                   <  1:2183148/140‑1 (MQ=255)
                                                                        cGTTTT‑GTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAAAA‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATAc                                                                   >  1:1001081/1‑140 (MQ=255)
                                                                          tttt‑GTACTTTGTTTCCCCGTTTTTTTCTGTTTCTTCATATCCGATGTGTGCTAATAAAATTTTAAAAAC‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCt                                                                 <  2:1968699/140‑1 (MQ=255)
                                                                          tttt‑GTACTGTGTTCCCCAGTTTTTTTCATCTTATAAATAAACTATGTGTGAAAAAAAAATTTTAAAAAC‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCt                                                                 <  1:3029456/140‑1 (MQ=255)
                                                                                   tgtttttCCCAGTTTTTGTCCGTTTCTTCATAACCGATGTGTTAAAAAAAATTTTTACAAAC‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAaca                                                         <  1:5057322/136‑1 (MQ=255)
                                                                                    gtgtTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAAAA‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAacag                                                        >  1:2850831/1‑140 (MQ=255)
                                                                                    gtgtTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAAAA‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAacag                                                        >  1:1284381/1‑140 (MQ=255)
                                                                                    gtgtTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAAAA‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAacag                                                        >  1:3568794/1‑140 (MQ=255)
                                                                                     tttttCCCAGTTTTCTTCAGTTTCTTAATATACTATGTTTGAAAATAAAATTTTAAAAAA‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAacaga                                                       <  2:1748843/138‑1 (MQ=255)
                                                                                     tgtTTCCCTTTTTTAGTCAGCTTCTACATATACGATGTGTGATAATAAAATTTTTAAAAA‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAacaga                                                       <  1:1256060/140‑1 (MQ=255)
                                                                                     tgtTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAATTGTTACAAAC‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAacaga                                                       <  2:3852773/140‑1 (MQ=255)
                                                                                     tgtTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAAAA‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAacaga                                                       >  2:3949418/1‑140 (MQ=255)
                                                                                     tgtTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAAAA‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAacaga                                                       >  1:1968699/1‑140 (MQ=255)
                                                                                     tgtTTCCATGTTTTATTCAGCTTCTTATTATACGTCGTTTTATAATAAAATGTTACAAAC‑ACGACCGGTGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAacaga                                                       <  1:2469424/140‑1 (MQ=255)
                                                                                     tgtTGCCCCGGTTTCGTCCGGTTTTTCATATACGATGTGTGATAATAAAATGTTTCAAAC‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAacaga                                                       <  2:3552340/140‑1 (MQ=255)
                                                                                       tttCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAAAA‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAacagaca                                                     >  2:4339229/1‑140 (MQ=255)
                                                                                       tttCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAAAA‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAacagaca                                                     >  2:957361/1‑140 (MQ=255)
                                                                                       tttCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAAAA‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAacagaca                                                     >  2:4316353/1‑140 (MQ=255)
                                                                                          cccAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAAAA‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGaa                                                  >  1:4322706/1‑140 (MQ=255)
                                                                                          cccAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAAAA‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGaa                                                  >  2:437240/1‑140 (MQ=255)
                                                                                              cttttAGTCAGCTTCTTCATATACCAAGTGTGATAATAAAATTTTAAAAAA‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATaag                                              <  2:1930661/138‑1 (MQ=255)
                                                                                               cTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAAAA‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATaaga                                             >  1:1219757/1‑140 (MQ=255)
                                                                                               cTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAAAA‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATaaga                                             >  2:814085/1‑140 (MQ=255)
                                                                                               cTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAAAA‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATaaga                                             >  1:4141291/1‑140 (MQ=255)
                                                                                                 ttcctCAGCTTCTTCTAATACGATGTGTGCTAATAAAATGTTTAAAAA‑ACGACCGGGGTAAAGCTGACTCTATTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATaagaag                                           <  1:5742753/136‑1 (MQ=255)
                                                                                                 ttAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAAAA‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAACAAAAGCGAATGAATACCTGCCTAACAGAGAGAATaagaag                                           >  1:5380111/1‑140 (MQ=255)
                                                                                                 ttAGACAGCTTCTTCATATACGATTTGTCCTAATAAAATTTTAAAAAA‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATaagaag                                           <  2:2726888/140‑1 (MQ=255)
                                                                                                   aGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAAAA‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATAAGAagag                                         >  2:4524566/1‑140 (MQ=255)
                                                                                                      aagattcttcGAAGACGAAGTGTGATAATAAATTTTTTCAAAA‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATAAGAAGAGTTg                                      <  2:5327683/136‑1 (MQ=255)
                                                                                                         cttcttCATATACGAAGTGTGCTAATAAAATGTTTCAAAA‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATAAGAAGAGTTGata                                   >  1:1633357/1‑140 (MQ=255)
                                                                                                         cttcttCATATACGAAGTGTGCTAATAAAATGTTTCAAAA‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATAAGAAGAGTTGata                                   >  2:4133064/1‑140 (MQ=255)
                                                                                                         cttcttCATATACGAAGTGTGCTAATAAAATGTTTCAAAA‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATAAGAAGAGTTGata                                   >  2:5579367/1‑140 (MQ=255)
                                                                                                              tcATATCCCAAGTGTGATAATAAAATGTTTCAAAC‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATAAGAAGAGTTGATATTCaa                              <  2:3972399/140‑1 (MQ=255)
                                                                                                                   taCGAAGTGTGCTAATAAAATGTTTCAAAA‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATAAGAAGAGTTGATATTCAACACtt                         >  2:2464437/1‑140 (MQ=255)
                                                                                                                   taCGAAGTGTCCTCATAAAATGTTTCAAAA‑ACGAACGGGGTAAAGCTGACTCTCTTGTCTAAATGGGAAAGAGTCAACGAAAAAAATCTAATGAATACCTGCCTAACAGACAGAATAAGAAGAGTTGATATTCAACACtt                         >  1:993170/1‑140 (MQ=255)
                                                                                                                    tctaaGTGTGCTAATAAAATTTTTAAAAA‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATAAGAAGAGTTGATATTCAACACttt                        <  2:1197505/137‑1 (MQ=255)
                                                                                                                    ccGAAGTTTGATAATAAATTTTTAAAAAA‑ACGACCGGGGTAAATCTGACTCTGTTGTCTTAATGTGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATAAGAAGAGTTGATATTCAACACttt                        <  2:1706895/139‑1 (MQ=255)
                                                                                                                    actatttgttCTAATAAATTTTTAAAAAA‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATAAGAAGAGTTGATATTCAACACttt                        <  2:3764735/134‑1 (MQ=255)
                                                                                                                       aaGTGTGCTAATAAAATGTTTCAAAA‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAGTGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATAAGAAGAGTTGATATTCAACACTTTTCg                     >  2:5677491/1‑140 (MQ=255)
                                                                                                                       aaGTGTGCTAATAAAATGTTTCAAAA‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATAAGAAGAGTTGATATTCAACACttttag                     >  2:1124263/1‑138 (MQ=255)
                                                                                                                          tgtgCTAATAAAATGTTTCAAAA‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACACAATAAGAAGAGTTGATATTCAACACTTTTCGtta                  >  2:199167/1‑138 (MQ=255)
                                                                                                                            ttcTAATAAAATGTTTAAAAA‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGACTGAATACCTGCCTAACAGACAGAATAAGAAGAGTTGATCTTCAACACTGTTGGTACAg                >  2:3305751/3‑140 (MQ=255)
                                                                                                                            tgCTAATAAAATGTTTCAAAA‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATAAGAAGAGTTGATATTCAACACTTTTCGTACAg                >  1:5173247/1‑140 (MQ=255)
                                                                                                                            tgCTAATAAAATGTTTCAAAA‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATAAGAAGAGTTGATATTCAACACTTTTCGTAAAg                >  2:4265848/1‑140 (MQ=255)
                                                                                                                            tgCTAATAAAATGTTTCAAAA‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATAAGAAGAGTTGATATTCAACACTTTTCGTAAAg                >  2:1577128/1‑140 (MQ=255)
                                                                                                                            tgCTAATAAAATGTTTCAAAA‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATAAGAAGAGTTGATATTCAACACTTTTCGTAAAg                >  2:5154076/1‑140 (MQ=255)
                                                                                                                            tgCTAATAAAATGTTTCAAAA‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATAAGAAGAGTTGATATTCAACACTTTTCGTAAAg                >  1:4025802/1‑140 (MQ=255)
                                                                                                                            tgCTAATAAAATGTTTCAAAA‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATAAGAAGAGTTGATATTCAACACTTTTCGTAAAg                >  2:2892035/1‑140 (MQ=255)
                                                                                                                               taataaAATGTTTAAAAA‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATAAGAAGAGTTGATATTCAACACTTTTCGTAAAgggg             <  2:3801755/140‑1 (MQ=255)
                                                                                                                               taaaaaAATGTTTCAAAA‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCGGCCTAACAGACAGAATAAGAAGAGTTGATATTCAACACTTTTCGTAAAgggg             <  2:3249053/140‑1 (MQ=255)
                                                                                                                                  acaaaTCTTTAACAC‑ACGCCGGGGGTAAAGCTGACTATCTTGTCGTAATGGGAAATACTCAACGAAAAAAAGAGAATGAATACCTGCCTAACAGACAGAATAAGAAGAGTTGATATTCAACACTTTTCGTAAAGGGGTGa          <  2:712325/138‑1 (MQ=255)
                                                                                                                                   taatcttttCAAAACACGACCGGGGTAACGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATAAGAAGAGTTGATATTCAACACTTTTCGTAAAGGGGTGa          <  2:3625520/134‑1 (MQ=255)
                                                                                                                                    aaaTGTTTCAAAA‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATAAGAAGAGTTGATATTCAACACTTTTCGTAAAGGGGTGaca        >  1:4616016/1‑140 (MQ=255)
                                                                                                                                    aaaTGTTTCAAAA‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATAAGAAGAGTTGATATTCAACACTTTTCGTAAAGGGGTGaca        >  1:2197921/1‑140 (MQ=255)
                                                                                                                                      aTGTTTCAAAA‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACATACAGAATAAGAAGAGTTGATATTCAACACTTTTCGTAAAGGGGGGACAcc      >  2:3188963/1‑140 (MQ=255)
                                                                                                                                            |                                                                                                                                          
TTTAATGGTGGCTGTTATGTTTACATGCAGATTCCTTCCCTAACCTGTCCTTATCTCCGCTTCTTTTTCAAACGTTTT‑GTACAGTGTTTCCCAGCTTTAGTCAGCTTCTTCATATACGAAGTGTGCTAATAAAATGTTTCAAAA‑ACGACCGGGGTAAAGCTGACTCTCTTGTCTTAATGGGAAAGAGTCAACGAAAAAAAGCGAATGAATACCTGCCTAACAGACAGAATAAGAAGAGTTGATATTCAACACTTTTCGTAAAGGGGTGACACCAATG  >  NZ_CP034943/2034454‑2034730

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑