| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP034943 | 3,446,995 | C→A | 5.1% | V197V (GTG→GTT) | degU ← | two‑component system response regulator DegU |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP034943 | 3,446,995 | 0 | C | A | 5.1% | 1304.5 / 10.1 | 490 | V197V (GTG→GTT) | degU | two‑component system response regulator DegU |
| Reads supporting (aligned to +/- strand): ref base C (105/317); new base A (44/3); total (170/320) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.87e-21 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 490 total aligned reads displayed.
AAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTGA > NZ_CP034943/3446858‑3447133 | aaaaGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCAc < 2:178936/140‑1 (MQ=255)aaaaGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCAc < 1:2091855/140‑1 (MQ=255)aaaaGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCAc < 1:769034/140‑1 (MQ=255)aaaaGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCAc < 1:1393629/140‑1 (MQ=255) aaaGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACg < 1:3865457/140‑1 (MQ=255) tGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTtct < 2:2545059/140‑1 (MQ=255) gCCTAGTAAAAGGCAAGTCTCCTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCA‑TTTTTTGTAAAATATTGCTGACATGGTTTTTAACGGTTTtctc < 1:1837020/140‑1 (MQ=255) cccAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCa < 2:4797507/140‑1 (MQ=255) cccAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCa < 2:5705815/140‑1 (MQ=255) aGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCACCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTg < 2:802289/140‑1 (MQ=255) aaaaGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATa < 2:5138752/140‑1 (MQ=255) aGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAAc < 2:3195045/140‑1 (MQ=255) ggCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTTAATTGA‑TTTTTTTGAAAATATTTCTCACAAGGTTTTTGACGGTTTTGTCACTGATaaaaa > 1:3596278/1‑138 (MQ=255) gCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACaa < 2:3717158/140‑1 (MQ=255) aGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGa < 1:3236812/140‑1 (MQ=255) aGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGa < 1:4213468/140‑1 (MQ=255) aGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGa < 2:1943485/140‑1 (MQ=255) aGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGa < 1:125245/140‑1 (MQ=255) gTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGAt > 2:4041122/1‑140 (MQ=255) gTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACAATAA‑TTTTTTTCAAAATATTTGTGAGAGGGTTTTTCACCGTTTTGTCACTGATAAAAAAttct > 1:4684144/1‑137 (MQ=255) gTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTGTACCTTAA‑TTTTTTGGAAAATATTGCTCACATGGTTTTTACCGGGTTTATGACTGATAAACACTGAt > 1:4881373/1‑140 (MQ=255) tctcTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACACCGGCTTGCGTCCGGTCGTTTACATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGAtt < 1:2616364/140‑1 (MQ=255) ttcttctaCTCTCTCATTTCTACCCAGCCATTTTTAATGGCGACCACACCGGCTTGCGTCCGGGCGTTTACATTCA‑TTTTTTGCAAAATATTGCACACATGGTTTTTCACGGTTTTCTCACTGATAAACCAAGATTCAcc > 2:3013533/7‑140 (MQ=255) tattatACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTAA‑TTTTTTGCAAAATAATTCTCCCAAGGTTTTTCAAGGTTTTATAACTGATAAACAAAGATTCACCa > 1:153402/1‑140 (MQ=255) taCTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTAA‑TTTTTTGCAAAATATTTCTCACAAGGTTTTTAACGGTTTTATCACTGATAAACAATGATTCACCAATAcc > 2:2206859/1‑140 (MQ=255) taCTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTGTACAATCA‑TTTTTTTCAAAATATTTGTAACATGGTTTTTAAAGGTTTTATCAATGATAAAAAATGATTAACCAATAcc > 1:967842/1‑140 (MQ=255) cTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAAATTAA‑TTTTTTTCAAAATATTGCTCACATGGTTTTTCAAGGTTTTATAAATGATAAAAAAAGATTCAACAAAACcgc > 2:325766/1‑140 (MQ=255) aTCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCA‑TTTTTTGCAAAATATTGCTAACATTGTTTTTCAAGGTTTTCTCACTGATAAACAATGATTCACCAATAcagagg > 2:5256447/1‑135 (MQ=255) aTCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTGTTCATTCA‑TTTTTTGCAAAATATTTCTCACATGGTTTTTGACGGTTTTATCAATGATAAAAAAATATTCACCAAAACCGCgg > 1:5803376/1‑140 (MQ=255) tctcATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTGTTCATTCA‑GTTTTTTCCAAATATTGCTCACATTGTTTTTGACCGTGTTGTAACAGAGAAACAAAGTTTCACCAAAAACGAGGt > 1:102798/1‑140 (MQ=255) tctcAGTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCA‑TTTTTTGCAAAATATTGCGCACATGGTTTTTACCGGGTTTCTCACTGATAAACACTGATTCACCAATAACGCggg > 2:3573219/1‑139 (MQ=255) ctcATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTGA‑TTTTTTGCAAAAAATTTCTCACAAGGTTTTTAACCGTTTTATAACTGATAAACAAAGAATAACCAAAACCCCGGtt > 1:2418315/1‑140 (MQ=255) tttCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCA‑TTGTTTGCAAAATATTGCTCACAAGGTTGTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCtt > 2:1442365/1‑140 (MQ=255) cTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAAATTAA‑TTTTTTGCAAAAAATTTCTCACATGGTTTTTGACCGTTTTATAACTGATAAACAATGAGTAACCAATAACGCGGTTGCttttt > 2:1821166/1‑140 (MQ=255) cccAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACAATAA‑TTTTTTTAAAAAAATTGCTCACATGGTTTTTAAAGGTTTTCTCAATTATAAAAAATTATTCACCAATACCGCCGTTGCtttttaag > 2:667237/1‑137 (MQ=255) aGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACCTTCA‑TTTTTTGCACAATATTGCGCAAATGGTTTTGCACGGGGTTCTCACTGATTAACCAAGATTCACCCATACCGCGGGTGCTTTTTCCGtgt > 2:5554307/1‑138 (MQ=255) aGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCA‑TTTTTTTCAAAATATTGCTCACATGTTTTTTGACGGTTTTGTCACTTATAAAAAATGATTAACCAATAACGCGGGTTCTTTTTACGTCt > 2:870790/1‑140 (MQ=255) aGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACAATCA‑TTTTTTGCAAAATATTGCTCACCTGGTTTTTCACGGTTTTTTCACAGATAAACAAAGATTCACCAAAAACCCGGTTTCTTTTTACGTCt > 1:3161285/1‑140 (MQ=255) aGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTAAATTCA‑TTTTTTTCAAAATATTGCTCACAGTGTTTTTAACGGTTTTATCACTGATAAACAATGATTAACCAATACCGCGGTTGCTTTTTcactct > 2:5039783/1‑135 (MQ=255) tttttAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTAA‑TTTTTTGCAAAATATTTCTCACATGGTTTTTCACGGTTTTGTCACTGATAAACAAAAATTAACCAATAACCCGGTTTCTTTTTACGTCTGCAAg > 2:3310665/1‑140 (MQ=255) ttttAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGGTGCTTTTTCCGTCTGCAAGc < 2:5617039/140‑1 (MQ=255) gCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCATTTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGGTGCTTTTTCCGTCTGCAAGCATCTgca < 2:1296298/140‑1 (MQ=255) gCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTgcag < 2:4314976/140‑1 (MQ=255) gCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTgcag < 2:4850800/140‑1 (MQ=255) gCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTgcag < 1:5284670/140‑1 (MQ=255) gACCACCACGGCTGGCGTCCGGTCGTTTACATTCA‑TTTTTTGCAAAATATTGCTCAGATGGCTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAAGACCGCGGGTGCTTTTTCCGTCTGCAAGCATCTgcagca < 1:4421401/140‑1 (MQ=255) gACCACAACGGCTTGCGTCCGGTCGTGTTCCTTGA‑TTTTTTGGAAAAAATTGCTCACATTGTTTTTGACGGTTTTGTCACTGATAAACAATGATTGACCCATAACGCGGGTTGTTTTTGGGGGTGCAACCATCTggagca > 1:5082052/1‑140 (MQ=255) aCCACAACGGCTTGCGTCCGGTCGTTTACATTCA‑TTTTTTTCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTGACTGATAAAAAATTATTAAACAATAACGCGGTTTCTTTTTGCGTCTGCAAGCATCTGCAGCAc > 2:4508814/1‑140 (MQ=255) aCCACAACGGCTTGCGTCCGGTCGTTTACATTCA‑TTTTTTTCAAAATATTGCGCACCAGGGTTTTGACCGTTTTATCACAGATAAACAAATATTCACCAATTCCGCGGTTGCGTTTTCCGTGTGCAAGCATCTGGAGCAc > 2:2296525/1‑140 (MQ=255) aCCACAACGGCTTGCGTCCGGTCGTTTACATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCAc > 2:2847722/1‑140 (MQ=255) cacaACGGCTTGCGTCCGGTCGTTTACATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACtt < 2:204628/140‑1 (MQ=255) gTCCGGTCGTTTTCATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTATCACTGATAAAAAATTATTCACCAATACCGCGGTTGGTTTTTCCGTCTGCAAGCAACTGCAGCACTTCACATTAccgccg > 2:4216941/1‑140 (MQ=255) cGGTCGTTTACATTCA‑TTTTTTGCAAAATATTGCTCACATTGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTACGTCTGCAAGCATATGCAGCACTTCACATTACCCCCGAGt > 2:1111169/1‑140 (MQ=255) cGGTCGTTTACATTCA‑TTTTTTGCAAAATAATGCTCACAAGGTTTTTCACGGTTTTATCACTGATAAAAAATGATTAACCAAAACCGCGGTTGCTTTTTACGTCTTCAACCATCTGCAGCACATCACATTGCCGCCGAGt > 2:3849410/1‑140 (MQ=255) ggTCGTTTACATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGtt < 1:1708150/140‑1 (MQ=255) ggTCGTTTACATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGtt < 1:1485009/140‑1 (MQ=255) gTCGTTTACATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTa < 1:4925251/140‑1 (MQ=255) cttttACATTCA‑TTTTTTGCAAAATATTTCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGGTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTaaa < 2:4397320/138‑1 (MQ=255) cGTTTACATTCA‑TTTTTTGCATAAGATTGCTCACATGGTTTTTCACGGTTTTATCACTGATAAACAATGATTCACCAATACCGCGGGTGCTTTTTACGTCTGCAAGCATCTGCAGCACTTCTCATTCCCGCCGAGTTaaa < 1:3306314/140‑1 (MQ=255) cGTTTACATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTaaa < 2:2716254/140‑1 (MQ=255) cGTTTACATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACAGTCCCGCCGAGTTaaa < 1:1109836/140‑1 (MQ=255) cGTTTACATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGGTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTaaa < 1:436576/140‑1 (MQ=255) cGTTTACAGTCA‑TTTTTTTCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAAAAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTaaa < 1:4546937/140‑1 (MQ=255) cGTTTAAATTCA‑TTTTTTGCAAAATATTGCTCACATGTTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATATGCAGCACTTCACAGTCCCGCCGAGTTaaa < 1:4006616/140‑1 (MQ=255) tttACATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAat < 1:1514010/140‑1 (MQ=255) tttACATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAat < 1:2364432/140‑1 (MQ=255) attca‑ttTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTa < 2:4684144/140‑1 (MQ=255) ca‑ttTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATg < 1:5478802/140‑1 (MQ=255) a‑ttTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATgg > 2:1371817/1‑140 (MQ=255) a‑ttTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATgg > 1:4116853/1‑140 (MQ=255) tttGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTg < 1:3701910/140‑1 (MQ=255) tGCAATATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCg < 2:4124463/140‑1 (MQ=255) tGCAAAATATTGCTCACCTGGTTTTTCACGGTTGTCTCACTGATAAACAATGATTCACCAATACCGCGGGTGCGTTGTCCGTCTGCAAGCATCTGCAGCACTTCCCAGTCCCGCCGAGTTAAAATATGTAATGGTCTGCg < 1:2746141/140‑1 (MQ=255) tGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCg < 1:1172279/140‑1 (MQ=255) tGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCg < 1:1808638/140‑1 (MQ=255) tGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCg < 1:558838/140‑1 (MQ=255) tGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGGTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCg < 2:1204601/140‑1 (MQ=255) tGCAAAATAGTGATAACATGGTTTTTCACGTTTTTCTAACTGATAAACAATGATTCACCAATACCGCGGGTGATTTTTCCGTCTGCAAGAATCTGCAGCACTTCACATTCCCGCATAGTTAAAATATGTAATGGTCTGCg < 1:227093/140‑1 (MQ=255) cAAAATATTGCTCACCTGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACAGTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGa < 2:2510924/140‑1 (MQ=255) aaTATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGAttt < 1:891425/140‑1 (MQ=255) aaTATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACAGTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGAttt < 1:849002/140‑1 (MQ=255) gCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGAt < 1:4807621/140‑1 (MQ=255) gCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGAt < 1:2942948/140‑1 (MQ=255) gCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACAGTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGAt < 1:4253859/140‑1 (MQ=255) gCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGGTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGAt < 2:153402/140‑1 (MQ=255) tCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAg < 1:3050845/140‑1 (MQ=255) ctGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCt < 2:5803376/139‑1 (MQ=255) attgTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCt < 1:2211173/137‑1 (MQ=255) aTGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCt < 1:5677647/140‑1 (MQ=255) aTGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCt < 1:1335227/140‑1 (MQ=255) aTGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCt < 1:2483756/140‑1 (MQ=255) aTGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCt < 1:5191303/140‑1 (MQ=255) aTGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCt > 1:3445032/1‑140 (MQ=255) aTGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCt < 2:5527744/140‑1 (MQ=255) aTGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCt > 1:2028259/1‑140 (MQ=255) aTGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCGGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCt < 2:3430526/140‑1 (MQ=255) ttttCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGGTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACAGTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGc < 2:538110/140‑1 (MQ=255) ttCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTg < 2:1073986/140‑1 (MQ=255) ttCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTg < 2:3072702/140‑1 (MQ=255) ttCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGGTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTg < 2:1660279/140‑1 (MQ=255) | AAAAGACCTGCCCAGTAAAAGGCAAGTCTCTTATTATACTATCTCATTTCTACCCAGCCATTTTTAATGGCGACCACAACGGCTTGCGTCCGGTCGTTTACATTCA‑TTTTTTGCAAAATATTGCTCACATGGTTTTTCACGGTTTTCTCACTGATAAACAATGATTCACCAATACCGCGGTTGCTTTTTCCGTCTGCAAGCATCTGCAGCACTTCACATTCCCGCCGAGTTAAAATATGTAATGGTCTGCGGATTTCAGGATAGACCTCATGCTGA > NZ_CP034943/3446858‑3447133 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |