Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NZ_CP034943 3,496,387 G→T 8.8% S347R (AGC→AGA)  EO946_RS17995 ← glucosaminidase domain‑containing protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0349433,496,3870GT 8.8% 823.5 / 17.1 317S347R (AGC→AGA) EO946_RS17995glucosaminidase domain‑containing protein
Reads supporting (aligned to +/- strand):  ref base G (68/211);  new base T (36/2);  total (104/213)
Fisher's exact test for biased strand distribution p-value = 1.23e-17
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 322 total aligned reads displayed.

CTGCTGTTGTTCCAGTTGCTTTTTTCGTTGCCTTTACTTTTTTCTGAGAAAAGAAGGCTGCGGCTTTGTTTGCTTGCTGCTCGCCTAAAATCTGCGCCGTCGTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATGACGTGTAA‑TGCCATTTTTTCTTTTTAAAGAAAGTGTCTATCTTTTGCAGCTGCTGTTTCGTTAACCCCTTCATATTCACTGTATATGATGTGCTTTTGTCAACCTGTTGATAACTGCCTGATA  >  NZ_CP034943/3496248‑3496517
                                                                                                                                           |                                                                                                                                   
ctgctgTTGTTCCAGTTGCTTTTTTCGTTGCCTTTACTTTTTTCTGAGAAAAGAAGGCTGCGGCTTTGTTTGCTTGCTGCTCGCCTAAAATCTGCGCCGTCGTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTGGTg                                                                                                                                     >  2:1018529/1‑140 (MQ=255)
ctgctgTAGTTCCTGTTGCTTTTTTCGTTGCCTTTACTTTTTTCTGAGAAAAGAAGGCTGCGGCTTTGTTTGCTTGCTGCTCGCCTAAAATCTGCGCCGTCGTTATTGGATAGGCTGTCGACATGGTCGTTTTTTTGATg                                                                                                                                     <  1:5417293/140‑1 (MQ=255)
     gttgttCCAGTTGCTTTTTTCGTTGCCTTTACTTTTTTCTGAGAAAAGAAGGCTGCGGCTTTGTTTGCTTGCTGCTCGCCTAAAATCTGCGCCGTCGTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGa                                                                                                                                <  2:2340682/140‑1 (MQ=255)
       tgttCCAGTTGCTTTTTTCGTTGCCTTTACTTTTTTCTGAGAAAAGAAGGCTGCGGCTTTGTTTGCTTGCTGCTCGCCTAAAATCTGCGCCGTCGTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATg                                                                                                                              <  2:604721/140‑1 (MQ=255)
       tgttCCAGTTGCTTTTTTCGTTGCCTTTACTTTTTTCTGAGAAAAGAAGGCTGCGGCTTTGTTTGCTTGCTGCTCGCCTAAAATCTGCGCCGTCGTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATg                                                                                                                              <  1:1539626/140‑1 (MQ=255)
       tgttCCAGTTGCTTTTTTCGTTGCCTTTACTTTTTTCTGAGAAAAGAAGGCTGCGGCTTTGTTTGCTTGCTGCTCGCCTAAAATCTGCGCCGTCGTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATg                                                                                                                              <  2:5754533/140‑1 (MQ=255)
       tgttCCAGTTGCTTTTTTCGTTGCCTTTACTTTTTTCTGAGAAAAGAAGGCTGCGGCTTTGTTTGCTTGCTGCTCGCCTAAAATCTGCGCCGTCGTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATg                                                                                                                              <  1:3280404/140‑1 (MQ=255)
             aGTTGCTTTTTTCGTTGCCTTTACTTTTTTCTGAGAAAAGAAGGCTGCGGCTTTGTTTGCTTGCTGCTCGCCTAAAATCTGCGCCGTCGTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATTACgtgt                                                                                                                        >  2:2019448/1‑140 (MQ=255)
                tGCTTTTTTCGTTGCCTTTACTTTTTTCTGAGAAAAGAAGGCTGCGGCTTTGTTTGCTTGCTGCTCGCCTAAAATCTGCGCCGTCGTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATGACGTGTAA‑t                                                                                                                    <  2:5212038/140‑1 (MQ=255)
                                  tACTTTTTTCTGAGAAAAGAAGGCTGCGGCTTTGTTTGCTTGCTGCTCGCCTAAAATCTGCGCCGTCGTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATGACGTGTAA‑TGCCATTTTTTCTTTTTaa                                                                                                  <  1:4966358/140‑1 (MQ=255)
                                     ttttttCTGAGAAAAGAAGGCTGCGGCTTTGTTTGCTTGCTGCTCGCCTAAAATCTGCGCCGTCGTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATGACGTGTAA‑TGCCATTTTTTCTTTTTaaaga                                                                                               <  2:3678887/140‑1 (MQ=255)
                                     ttttttCTGAGAAAAGAAGGCTGCGGCTTTGTTTGCTTGCTGCTCGCCTAAAATCTGCGCCGTCGTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATGACGTGTAA‑TGCCATTTTTTCTTTTTaaaga                                                                                               <  2:5117823/140‑1 (MQ=255)
                                      tttttCTGAGAAAAGAAGGCTGCGGCTTTGTTTGCTTGCTGCTCGCCTAAAATCTGCGCCGTCGTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATGACGTGTAA‑TGCCATTTTTTCTTTTTaaagaa                                                                                              <  1:4788085/140‑1 (MQ=255)
                                      tttttCTGAGAAAAGAAGGCTGCGGCTTTGTTTGCTTGCTGCTCGCCTAAAATCTGCGCCGTCGTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATGACGTGTAA‑TGCCATTTTTTCTTTTTaaagaa                                                                                              <  1:1415595/140‑1 (MQ=255)
                                         ttCTGAGAAAAGAAGGCTGCGGCTTTGTTTGCTTGCTGCTCGCCTAAAATCTGCGCCGTCGTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTGATTCTTGATGACGTGTGA‑TGGCATTTTTTGTTTTtaaataaaat                                                                                           >  1:4663036/1‑138 (MQ=255)
                                         ttCTGAGAAAAGAAGGCTGCGGCTTTGTTTGCTTGCTGCTCGCCTAAAATCTGCGCCGTCGTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATTTCGTGTAA‑TTCCATTTTTTATTTTTAAATAAAgt                                                                                           >  2:4362415/1‑140 (MQ=255)
                                                   agaagGCTGCGGCTTTGTTTGCTTGCTGCTCGCCTAAAATCTGCGCCGTCGTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATGACGTGTAA‑TGCCATTTTTTCTTTTTAAAGAAAGTGTCTATCttt                                                                                 <  2:3432670/140‑1 (MQ=255)
                                                   agaagGCTGCGGCTTTGTGTGCTTGCTGCTCGCCTAAAATCTGCGCCGTCGTTCTTGGATAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATGACGTGTAA‑TGCCATTTTTTCTTTTTAAAGAAAGTGTCTATCttt                                                                                 <  2:1092814/140‑1 (MQ=255)
                                                          tGCGGCTTTGTTTGCTTGCTGCTCGCCTAAAATCTGCGCCGTCGTTATTGGATAGGCTGTAGACATGGTCGTGTTTTTGTTGCTGGCTGAGGTGGAA‑TGACAATTTTTCTTTTTTAAGTAATTGTATATCTTTTTGAgct                                                                          >  1:5167192/1‑140 (MQ=255)
                                                           gCGGCTTTGTTTGCTTGCTGCTCGCCTAAAATCTGCGCCGTCGTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATGACGTGTAA‑TGCCATTTTTTCTTTTTAAAGAAAGTGTCTATCTTTTGCAgctg                                                                         <  1:1344374/140‑1 (MQ=255)
                                                             ggCTTTGTTTGCTTGCTGCTCGCCTAAAATCTGCGCCGTCGTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATGACGTGTAA‑TGCCATTTTTTCTTTTTAAAGAAAGTGTCTATCTTTTGCAgctgct                                                                       <  2:5574610/140‑1 (MQ=255)
                                                                 ttgtttgCTTGCTGCTCGCCTAAAATCTGCGCCGTCGTTATTGGATAGGCTGTAGACCTGGTCGTTTTTTTGATGCTGGATGACGGGTAA‑TGCCATTTTTTCTTTTTAAATAAAGTGTCTATAGTTTGCAGCTGCTGttt                                                                   >  2:2664207/1‑140 (MQ=255)
                                                                 ttgtttgCTTGCTGCTCGCCTAAAATCTGCGCCGTCGTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATTACGTGTAA‑TGCCATTTTTTGTTTTTAAAGAAAGTTGGTATCTTTTTCAGCTGCTGgtt                                                                   >  2:3734012/1‑140 (MQ=255)
                                                                     ttgcttgcTGCTCGCCTAAAATCTGCGCCGTCGTTTTTGGATAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATGACGTGTAA‑TGCCATTTTTTCTTTTTAAAGAAAGTGTCTATCTTTTGCAGCTGCTGTTTCGtt                                                               <  2:4043122/140‑1 (MQ=255)
                                                                       gcttgctGCTCGCCTAAAATCTGCGCCGTCGTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATGACGTGTAA‑TGCCATTTTTTCTTTTTAAAGAAAGTGTCTATCTTTTGCAGCTGCTGTTTCGTTaa                                                             <  2:1772237/140‑1 (MQ=255)
                                                                       gcttgctGCTCGCCTAAAATCTGCGCCGTCGTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATGACGTGTAA‑TGCCATTTTTTCTTTTTAAAGAAAGTGTCTATCTTTTGCAGCTGCTGTTTCGTTaa                                                             <  2:5707043/140‑1 (MQ=255)
                                                                       gcttgctGCTCGCCTAAAATCTGCGCCGTCGTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATGACGTGTAA‑TGCCATTTTTTCTTTTTAAAGAAAGTGTCTATCTTTTGCAGCTGCTGTTTCGTTaa                                                             <  2:3212077/140‑1 (MQ=255)
                                                                       gcttgctGCTCGCCTAAAATCTGCGCCGTCGTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATGACGTGTAA‑TGCCATTTTTTCTTTTTAAAGAAAGTGTCTATCTTTTGCAGCTGCTGTTTCGTTaa                                                             <  2:5503138/140‑1 (MQ=255)
                                                                       gcttgctGCTCGCCTAAAATCTGCGCCGTCGTTATGGGATAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATGACGTGTAA‑TGCCATTTTTTCTTTTTAAAGAAAGTGTCTATCTTTTGCAGCTGCTGTTTCGTTaa                                                             <  1:2046754/140‑1 (MQ=255)
                                                                         ttgctGCTCGCCTAAAATCTGCGCCGTCGTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTTTTGCTGGATGACGTGTAATTGCCA‑TTTTTCTTTTTAAATAAACTGTCTATCTTTTTGAGCTGCTGTTTAGTTAAcc                                                           >  2:851772/1‑140 (MQ=255)
                                                                         ttgctGCTCGCCTAAAATCTGCGCCGTCGTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTGTTGCTGGATTAAGTGTAA‑TTCCATTTTTTATTTTTAAAGAAAATGTCGATATTTTTCAGCTGCTGTTTAGTTaaaa                                                           >  2:1812898/1‑138 (MQ=255)
                                                                         ttgctGCTCGCCTAAAATCTGCGCCGTCGTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATGACGTGTAA‑TGCCATTTTTTCTTTTTAAAGAAAGTGTCTATCTTTTGCAGCTGCTGTTTCGTTAAcc                                                           <  2:2158232/140‑1 (MQ=255)
                                                                         ttgctGCTCGCCTAAAATCTGCGCCGTCGTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATGACGTGTAA‑TGCCATTTTTTCTTTTTAAAGAAAGTGTCTATCTTTTGCAGCTGCTGTTTCGTTAAcc                                                           <  2:2198520/140‑1 (MQ=255)
                                                                         ttgctGCTCGACTAAAATCTGCGCCGTCGTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATGACGTGTAA‑TGCCATTTTTTCTTTTTAAAGAAAGTGTCTATCTTTTGCAGCTGCTGTTTCGTTAAcc                                                           <  1:3089857/140‑1 (MQ=255)
                                                                           gctgctCGCCTAAAATCTGCGCCGTCGTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATGACGTGTAA‑TGCCATTTTTTCTTTTTAAAGAAAGTGTCTATCTTTTGCAGCTGCTGTTTCGTTAAcccc                                                         <  2:5768313/140‑1 (MQ=255)
                                                                            ctgctCGCCTAAAATCTGCGCCGTCGTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTGATTCTGGATGACCTGTAA‑TGCCATTTTTTATTTTTAAAAAAAGTGTATATCTTTTGCAGCTGCTGTTTAGTTAAaccca                                                        >  2:1227384/1‑139 (MQ=255)
                                                                             tgttCGCCTAAAATCTGCGCCGTCGTTATTTGATAGGCTGTAGAATTGGTCGTTTTTTTGATGCTGGATGACGTGTAA‑TGCCATTTTTTCTTTTTAAAGAAAGTGTCTATCTTTTGCAGCTGCTGTTTCGTTAACCCCtt                                                       <  2:2861914/137‑1 (MQ=255)
                                                                             tgctatccTAAAATCTGCGCCGTCGTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATGACGTGTAA‑TGCCATTTTTTCTTTTTAAAGAAAGTGTCTATCTTTTGCAGCTGCTGTTTCGTTAACCCCtt                                                       <  2:5153903/134‑1 (MQ=255)
                                                                              gctCTCATAAAATCTGCGCCGTCGTTATTGGATAGGCTGTAGAGATGGTCGTTTTTTTGATGCTGGATGACGTGTAA‑TGCCATTTTTTCTTTTTAAAGAAAGTGTCTATCTTTTGCAGCTGCTGTTTCGTTAACCCCTTc                                                      <  2:4687573/140‑1 (MQ=255)
                                                                              gctCGCCTAAAATCTGCGCCGTCGTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATGACGTGTAA‑TGCCATTTTTTCTTTTTAAAGAAAGTGTCTATCTTTTGCAGCTGCTGTTTCGTTAACCCCTTc                                                      <  1:2664207/140‑1 (MQ=255)
                                                                              gctCGCCTAAAATCTGCGCCGTCGTTATTGGATAGGCTGTAGACATGGTCGTGTTTTTGATGCTGGATGACGTGTTA‑TGCCATTTTTTGTTTTTAAATAAAGTGTCTATGTTTTGCGGCTGGTGGTGGGTTAAGCGCttg                                                      >  2:5586217/1‑139 (MQ=255)
                                                                                 cGCCTAAAATCTGCGCCGTCGTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATGACGTGTAA‑TGCCATTTTTTCTTTTTAAAGAAAGTGTCTATCTTTTGCAGCTGCTGTTTCGTTAACCCCTTCata                                                   <  2:2100847/140‑1 (MQ=255)
                                                                                  gCCTAAAATCTGCTCCGTCGTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATTACGTGTAA‑TGCCATTTTTTCTTTTTAAAGAAAGTGTCTATCTTTTGCAGCTGCTGTTTCGTTAACCCCTTCatat                                                  <  1:3470203/140‑1 (MQ=255)
                                                                                   ccTAAAATCTGCGCCGTCGTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATGACGTGTAA‑TGCCATTTTTTCTTTTTAAAGAAAGTGTCTATCTTTTGCAGCTGCTGTTTCGTTAACCCCTTCATAtt                                                 <  2:3828244/140‑1 (MQ=255)
                                                                                   ccTAAAATCTGCGCCGTCGTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATGACGTGTAA‑TGCCATTTTTTCTTTTTAAAGAAAGTGTCTATCTTTTGCAGCTGCTGTTTCGTTAACCCCTTCATAtt                                                 <  1:4723928/140‑1 (MQ=255)
                                                                                   ccTAAAATCTGCGCCGTCGTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATGACGTGTAA‑TGCCATTTTTTCTTTTTAAAGAAAGTGTCTATCTTTTGCAGCTGCTGTTTCGTTAACCCCTTCATAtt                                                 <  1:4267386/140‑1 (MQ=255)
                                                                                   ccTAAAATCTGCGCCGTCGTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATGACGTGTAA‑TGCCATTTTTTCTTTTTAAAGAAAGTGTCTATCTTTTGCAGCTGCTGTTTCGTTAACCCCTTCATAtt                                                 <  2:4748182/140‑1 (MQ=255)
                                                                                   ccTAAAATCTGCGCCGTCGTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATGACGTGTAA‑TGCCATTTTTTCTTTTTAAAGAAAGTGTCTATCTTTTGCAGCTGCTGTTTCGTTAACCCCTTCATAtt                                                 <  1:2757788/140‑1 (MQ=255)
                                                                                   ccTAAAATCTGCGCCGTCGTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATGACGTGTAA‑TGCCATTTTTTCTTTTTAAAGAAAGTGTCTATCTTTTGCAGCTGCTGTTTCGTTAACCCCTTCATAtt                                                 <  2:2806312/140‑1 (MQ=255)
                                                                                   ccTAAAATCGGCGCCGTCGTTATTGGATAGTCTGTAGCCATGGTCGTTTTTTTGATGCTGGATGACGTGTAA‑TGCCATTTTTTCTTTTTAAAGAAAGTGTCTATCTTTTGCAGCTGCTGTTTCGTTAACCCCTTCATAtt                                                 <  1:5564749/140‑1 (MQ=255)
                                                                                    cTAAAATCTGCGCCGTGGTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTGATGCTTGATGACGTGTAA‑TGCCATTTTTTCTTTTTAAAGAAAGTGTCTATCTTTTGCAGCTGCTGTTTCGTTAACCCCTTCATATTc                                                <  1:4582931/140‑1 (MQ=255)
                                                                                    cTAAAATCTGCGCCGTCGTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATGACGTGTAA‑TGCCATTTTTTCTTTTTAAAGAAAGTGTCTATCTTTTGCAGCTGCTGTTTCGTTAACCCCTTCATATTc                                                <  2:4395639/140‑1 (MQ=255)
                                                                                    cTAAAATCTGCGCCGTCGTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATGACGTGTAA‑TGCCATTTTTTCTTTTTAAAGAAAGTGTCTATCTTTTGCAGCTGCTGTTTCGTTAACCCCTTCATATTc                                                <  2:3998922/140‑1 (MQ=255)
                                                                                     tAACATCTGCGCCGTCGTTATTGGATAGGCTGTAGACCTGGTCGTTTTTTTGATTCTGGATGACGTGTAA‑TGCCATTGTTTCTATATAAAGAAAGTTTCTATCTTTTGCAGCTGCTGTTTCGTTAACCCCTACATATTCa                                               <  1:2512297/140‑1 (MQ=255)
                                                                                     tAAATTCTGCGCCTTAGTTAGTGGTTCGGATGTAGACATGGTCGTTTTTTTGATGCTGGATTTCGTGTTA‑TGGAATTTTTTCTTTTTACAGATAGTGTCTATCTTTTGCAGCTGCTGTTTCGTTAACACATTCATATTCa                                               <  2:4274096/140‑1 (MQ=255)
                                                                                     tAAAATCTGCGCCGTCGTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATGACGTGTAA‑TGCCATTTTTTCTTTTTAAAGAAAGTGTCTATCTTTTGCAGCTGCTGTTTCGTTAACCCCTTCATATTCa                                               <  1:10354/140‑1 (MQ=255)
                                                                                     tAAAATCTGCGCCGTCGTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATGACGTGTAA‑TGCCATTTTTTCTTTTTAAAGAAAGTGTCTATCTTTTGCAGCTGCTGTTTCGTTAACCCCTTCATATTCa                                               <  2:5416432/140‑1 (MQ=255)
                                                                                     tAAAATCTGCGCCGTCGTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATGACGTGTAA‑TGCCATTTTTTCTTTTTAAAGAAAGTGTCTATCTTTTGCAGCTGCTGTTTCGTTAACCCCTTCATATTCa                                               <  2:1579688/140‑1 (MQ=255)
                                                                                     tAAAATCTGCGCCGTCGTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATGACGTGTAA‑TGCCATTTTTTCTTTTTAAAGAAAGTGTCTATCTTTTGCAGCTGCTGTTTCGTTAACCCCTTCATATTCa                                               <  1:703049/140‑1 (MQ=255)
                                                                                      aataTCTTCGGCGTCGTTTTTGGATAGGCTGTAGACTTGGTCGTTTTTTTGATTCTGGATGACGTGTAA‑TGCCATTTTTTCTTTTTAAAGAAAGTTTCTATCTTTTGCAGCTGCTGTTTCTTTAACCCCTTCATATTCAc                                              <  2:5173019/137‑1 (MQ=255)
                                                                                      aaacTCTGCGCCGTCGTTATTGGAGAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATGACGTGTAA‑TGCCATATTTTCTTTTTAAAGAAAGTGTCTATCTTTTGCAGCTGCTGTTTCGTTAACCCCTTCATATTCAc                                              <  1:2196273/140‑1 (MQ=255)
                                                                                      aaaaTCTGCGCCGTCTTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATGACGTGTAA‑TGCCATTTTTTCTTTTTAAAGAAAGTGTCTATCTTTTGCAGCTGCTGTTTCGTTAACCCCTTCATATTCAc                                              <  2:3347918/140‑1 (MQ=255)
                                                                                      aaaaTCTGCGCCGTCGTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATGACGTGTAA‑TGCCATTTTTTCTTTTTAAAGAAAGTGTCTATCTTTTGCAGCTGCTGTTTCGTTAACCCCTTCATATTCAc                                              <  2:2560314/140‑1 (MQ=255)
                                                                                      aaaaTCTGCGCCGTCGTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATGACGTGTAA‑TGCCATTTTTTCTTTTTAAAGAAAGTGTCTATCTTTTGCAGCTGCTGTTTCGTTAACCCCTTCATATTCAc                                              <  1:3369032/140‑1 (MQ=255)
                                                                                      aaaaTCTGCGCCGTCGTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATGACGTGTAA‑TGCCATTTTTTCTTTTTAAAGAAAGTGTCTATCTTTTGCAGCTGCTGTTTCGTTAACCCCTTCATATTCAc                                              <  1:2792806/140‑1 (MQ=255)
                                                                                      aaaaTCTGCGCCGTCGTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATGACGTGTAA‑TGCCATTTTTTCTTTTTAAAGAAAGTGTCTATCTTTTGCAGCTGCTGTTTCGTTAACCCCTTCATATTCAc                                              <  1:4011746/140‑1 (MQ=255)
                                                                                      aaaaTCTGCGCCGTCGTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATGACGTGTAA‑TGCCATTTTTTCTTTTTAAAGAAAGTGTCTATCTTTTGCAGCTGCTGTTTCGTTAACCCCTTCATATTCAc                                              <  1:2295178/140‑1 (MQ=255)
                                                                                      aaaaTCTGCGCCGTCGTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATGACGTGTAA‑TGCCATTTTTTCTTTTTAAAGAAAGTGTCTATCTTTTGCAGCTGCTGTTTCGTTAACCCCTTCATATTCAc                                              <  1:3710480/140‑1 (MQ=255)
                                                                                      aaaaTCTGCGCCGTCGTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATGACGTGTAA‑TGCCATTTTTTCTTTTTAAAGAAAGTGTCTATCTTTTGCAGCTGCTGTTTCGTTAACCCCTTCATATTCAc                                              <  1:5752664/140‑1 (MQ=255)
                                                                                      aaaaTCTGCGCCGTCGTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATGACGTGTAA‑TGCCATTTTTTCTTTTTAAAGAAAGTGTCTATCTTTTGCAGCTGCTGTTTCGTTAACCCCTTCATATTCAc                                              <  1:1909198/140‑1 (MQ=255)
                                                                                      aaaaTCTGCGCCGTCGTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATGACGTGTAA‑TGCCATTTTTTCTTTTTAAAGAAAGTGTCTATCTTTTGCAGCTGCTGTTTCGTTAACCCCTTCATATTCAc                                              <  2:649526/140‑1 (MQ=255)
                                                                                      aaaaTCTGCGCCGTCGTTATTGGAGAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATGACGTGTAA‑TGCCATTTTTTCTTTTTAAAGAAAGTGTCTATCTTTTGCAGCTGCTGTTTCGTTAACCCCTTCATATTCAc                                              <  1:282351/140‑1 (MQ=255)
                                                                                       aaaTCTGCGCCGTCGTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATGACGTGTAA‑TGCCATTTTTTCTTTTTAAAGAAAGTGTCTATCTTTTGCAGCTGCTGTTTCGTTAACCCCTTCATATTCACt                                             <  2:2680027/140‑1 (MQ=255)
                                                                                       aaaTCTGCGCCGTCGTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATGACGTGTAA‑TGCCATTTTTTCTTTTTAAAGAAAGTGTCTATCTTTTGCAGCTGCTGTTTCGTTAACCCCTTCATATTCACt                                             <  1:4299067/140‑1 (MQ=255)
                                                                                         agcTGCGCCGTCGTTATTGGCTAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATGACGTGTAC‑TGCCATATTTTCTTTTTAACGAAAGTGTCTATCTTTTGCAGCTGCTGTGTCGTTAACCCCTTCATAGTCACTGt                                           <  2:3533306/138‑1 (MQ=255)
                                                                                              cgcCGTCGTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTTGTGCTGGATGACGGGTAA‑ATCCCTTTTTTCTTTTTAAAGAAAGTGTGTAAATTTTTCAGCTGGTGTTTGGTTAAACCCTTCATATTAAAAGtataat                                      >  2:1909198/1‑138 (MQ=255)
                                                                                              cgcCGTCGTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTTATTCTGGGTGCGGTGTTA‑TTGCATTTTTTTTTTTTTAAGTAAGTTGGTATCGTTTTCAGCTTCGGTGTGGTTAACCCCATGAAATTCACCGTATatg                                      >  1:1288048/1‑140 (MQ=255)
                                                                                              cgcCGTCGTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTGTTTCTGGATGTCGGGTAA‑TGGCATTTTTTGTTTTTAAAGTAAGTTTCTATCTTTTGAATCTGCTTTTTAGTTTAACACATAAAATTGACTGTatatt                                      >  2:2474095/1‑139 (MQ=255)
                                                                                                ccGTCGTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATGACGTGTAA‑TGCCATTTTTTCTTTTTAAAGAAAGTGTCTATCTTTTTCAGCTGCTGTTTCGTTAACCCCTTCATATTCACTGTATatgat                                    <  2:4997456/140‑1 (MQ=255)
                                                                                                    cgtTATTGGATAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATGACGTGTAA‑TGCCATTTTTTCTTTTTAAAGAAAGTGTCTATCTTTTGCAGCTGCTGTTTCGTTAACCCCTTCATATTCACTGTATATGATGTGc                                <  1:5492659/140‑1 (MQ=255)
                                                                                                        aTTGGATAGGCTGTAGACATGGTCGTTTTTTTTTTTGTTGATGACGTGTAA‑AGCCATTTTTTGTTTTTAAAGAAAGTTTGGATAGTTTTCATCTGCGTTTTAGTTAAACCCTTAAGATTGACAGTATATGATTTGCtttt                            >  2:3127480/1‑140 (MQ=255)
                                                                                                           ggATAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATGACGTGTAA‑TGCCATTTTTTCTTTTTAAAGAAAGTGTCTATCTTTTGCAGCTGCTGTTTCGTTAACCCCTTCATATTCACTGTATATGATGTGCTTTTGTc                         <  1:781632/140‑1 (MQ=255)
                                                                                                           ggATAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATGACGTGTAA‑TGCCATTTTTTCTTTTTAAAGAAAGTGTCTATCTTTTGCAGCTGCTGTTTCGTTAACCCCTTCATATTCACTGTATATGATGTGCTTTTGTc                         <  1:565234/140‑1 (MQ=255)
                                                                                                            gATAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATGACGTGTAA‑TGCCATTTTTTCTTTTTAAAGAAAGTGTCTATCTTTTGCAGCTGCTGTTTCGTTAACCCCTTCATATTCACTGGATATGATGTGCTTTTGTCa                        <  2:305108/140‑1 (MQ=255)
                                                                                                                 gCTGTAGACATGGTCGTTTTTTTTTTGCTGGCTGACGTGTAA‑TGCCATTTTTTGTTTTTTAAGAAAGGTTGGATGTGTTGGAGCTGCTGGTTCGTTTAACCCTTGATATTACCTGGTTATTATTTGCTGTTGTGaaacgg                   >  1:4141950/1‑136 (MQ=255)
                                                                                                                 gCTGTAGACATGGTCGTTTTTTTGATGCTGGATGACGTGTAA‑TGCCCTTTTTTGTTTTTAAAGAAAGTTTCTATCGTTTTCAGCTGGTGTTTAGTTAAACCGGTAAAATTAACTGGATATTATGTTGGTTTGTCAAACTg                   >  2:5289699/1‑140 (MQ=255)
                                                                                                                   tGTAGACATGGTCGTTTTTTTGATGGTGGAAGAAGTGTAA‑TTCCATTTTTTCTTTTTAAACAAATTGTCTAAGTTTTGCAGCATCTGTTTCGTTAAAACCGTCATATTGACAGTTTAAGATTTTCTGTTGTaaaacattt                 >  2:1983522/1‑134 (MQ=255)
                                                                                                                     tAGACATGGTCGTTTTTTTGAAGCTGGATGACGTGTAA‑TGCCATTTTTTTTTTTTAAAGAAAGTGTCTAGCTTTTTCAGCTGCTGTTTAGTTAACCCCTTCATATTAAATTTATATGTTTTTCTTTTTTCAACCTGttta               >  2:1441503/1‑138 (MQ=255)
                                                                                                                      aGACATGGTCGTTTTTTTGATGCTGGATGACGTGTAA‑AGCCAATTTTTCTTTTTAAAGAAAGTGTGTATCTTTTTCAGCGGCGGGTTGGTTAAACCCATCAAATTAACTGTATATGATTTTCTTTTTTCAACCTGTTTAt              >  2:80895/1‑140 (MQ=255)
                                                                                                                        aCATGGTCGTTTTTTTGATGCTGGATGACGTGTAA‑TGCCATTTTTTCTTTTTAAAGAAAGTGTCTATCTTTTGCAGCTGCTGTTTCGTTAACCCCTTCATATTCACTGTATATGATGTGCTTTTGTCAACCTGTTGATaa            <  1:3509126/140‑1 (MQ=255)
                                                                                                                        aCATGGTCGTTTTTTTGATGCTGGATGACGTGTAA‑TGCCATTTTTTCTTTTTAAAGAAAGTGTCTATCTTTTGCAGCTGCTGTTTCGTTAACCCCTTCATATTCACTGTATATGATGTGCTTTTGTCAACCTGTTGATaa            <  1:3575791/140‑1 (MQ=255)
                                                                                                                        aCATGGTCGTTTTTTTGATGCTGGATGACGTGTAA‑TCCCATTTTTTCTTTTTAAAGAAAGTGTCTATCTTTTGCAGCTGCTGTTTCGTTAACCCCTTCATATTCACTGTATATGATGTGCTTTTGTCAACCTGTTGATaa            <  1:3789440/140‑1 (MQ=255)
                                                                                                                           tGGTCGTGTTTTTTATGCAGGAAGACGGGTAA‑TGCCAATTTTTAGTTTTAAAGAAAGTGTCTATCTTTTTGAGCGGGTTTTTAGTTTACCCCTTCAAATATACAGTATATGAATTGCTTTTTTGAACATGGTGAAAAATg         >  2:865055/1‑140 (MQ=255)
                                                                                                                            tgTCGTTTTTTTGACGCTGGATGACGTGTAA‑TGCCATTTTTTCTTTTTAAAGAAAGTGTCTATTTTTTGGCGCTGCTGTTTTGTTATACCCTTCATATTCAAGGTATATGATGTGCGTTTTACAACCTGTTTATAACTGc        >  2:4825248/2‑140 (MQ=255)
                                                                                                                            ggTCGTTTTTTTGTTGCTGGATGACGTGTAA‑TTCCATTTTTTCTTTTTAAAGAAAGTGTCTATCTTTTTCAGCTGCTGTTTAGTTAAACCCTTAATATTAACTGTATATTATGTGCTTTTTTAAACATTTTTATaaattc        >  2:990490/1‑136 (MQ=255)
                                                                                                                            ggTCGTTTTTTTGATGCTTGATTACGTGTAA‑TTCCATTTTTTATTTTTAAATAAAGTGTCTATCTTTTTAAGCTGCATTTTCGTTAAACCCTTCATATTGACTTTATATGAATTTCTTTTTTAAACCGGTTGATTAATGc        >  2:326470/1‑140 (MQ=255)
                                                                                                                            ggTCGTTTTTTTGATGCTGGATGACGTGTAA‑TGCCATTTTTTCTTTTTAAAGAAAGTGTCTATCTTTTGCAGCTGCTGTTTCGTTAACCCCTTCATATTc                                                >  2:3918066/1‑100 (MQ=255)
                                                                                                                             gTCGTTTTTTTTAAGCTGGATGACGTGTAA‑TGCCAGTTTTTATATTTAAAGAAAGTGTGTATCTGTTGCAGCTGCTGTTTCGTTAACACCATCATAATAACTCTATATTATTTGCTTTTTTCAACCTGTTGATaaattcc       >  2:3589935/1‑135 (MQ=255)
                                                                                                                             gTCGTGTTTTTGATTCTGGATGACGTGTAA‑ATCCAATTTTTATTTTTAAATAAAGTGGCGATCGTTTGCAGCTGCTGTTTCGTTAAACCCTTAATATTAACAGTATATGATGTGCTTTTGTAAAACTGTTGATAAATGcc       >  2:2741975/1‑140 (MQ=255)
                                                                                                                                 tttttttGATGCTGGATGACGTGTAA‑TGCCATTTTTTCTTTTTAAAGAAAGTGTCTATCTTTTGCAGCTGCTGTTTCGTTAACCCCTTCATATTCACTGTATATGATGTGCTTTTGTCAACCTGTTGATAACTGCCTGAt   <  2:4118226/140‑1 (MQ=255)
                                                                                                                                           |                                                                                                                                   
CTGCTGTTGTTCCAGTTGCTTTTTTCGTTGCCTTTACTTTTTTCTGAGAAAAGAAGGCTGCGGCTTTGTTTGCTTGCTGCTCGCCTAAAATCTGCGCCGTCGTTATTGGATAGGCTGTAGACATGGTCGTTTTTTTGATGCTGGATGACGTGTAA‑TGCCATTTTTTCTTTTTAAAGAAAGTGTCTATCTTTTGCAGCTGCTGTTTCGTTAACCCCTTCATATTCACTGTATATGATGTGCTTTTGTCAACCTGTTGATAACTGCCTGATA  >  NZ_CP034943/3496248‑3496517

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑