| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009974 | 3,929,980 | (G)7→8 | intergenic (‑84/‑145) | RPPX_17505 ← / → RPPX_17510 | ATPase AAA/type IV secretion protein Rhs |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009974 | 3,929,973 | 1 | . | G | 88.5% | 494.6 / 65.7 | 156 | intergenic (‑77/‑152) | RPPX_17505/RPPX_17510 | ATPase AAA/type IV secretion protein Rhs |
| Reads supporting (aligned to +/- strand): ref base . (6/12); new base G (103/35); total (109/47) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.37e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 174 total aligned reads displayed.
ACCAGTTTCTCCTGGCCTAGGATCTGGGTAGAAAGAAAAGTGCGCAGCGCGATCAGCGCTTCACGGTGTTCCATCGGCGACGGTTCCTGGTAGGGGGCCTGAGGCGGCGTGAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATC‑C‑GGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTCCCACGCATGGCTGGCCTTTGCCTGATGGTCCGTGACGGCGTGCTGGCGCCTGCTTGTGCTTTTCGGACAAGCAGGA > CP009974/3929823‑3930118 | aCCAGTTTCTCCTGGCCTAGGATCTGGGTAGAAAGAAAAGTGCGCAGCGCGATCAGCGCTTCACGGTGTTCCATCGGCGACGGTTCCTGGTAGGGGGCCTGAGGCGGCGTGAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATc‑c < 1:1273115/151‑1 (MQ=255) cAGTTTCTCCTGGCCTAGGATCTGGGTAGAAAGAAAAGTGCGCAGCGCGATCAGCGCTTCACGGTGTTCCATCGGCGACGGTTCCTGGTAGGGGGCCTGAGGCGGCGTGAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATC‑C‑gg < 2:1631442/151‑1 (MQ=255) cAGTTTCTCCTGGCCTAGGATCTGGGTAGAAAGAAAAGTGCGCAGCGCGATCAGCGCTTCACGGTGTTCCATCGGCGACGGTTCCTGGTAGGGGGCCTGAGGCGGCGTGAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATC‑C‑gg > 2:591223/1‑151 (MQ=255) ggTTTCTCCTGGCCTAGGATCTGGGTAGAAAGAAACGTGCGCAGCGCGATCAGCGCTTCACGGTGTTCCATCGGCGACGGTTCCTGGTAGGGGGCCTGAGGCGGCGTGAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATC‑C‑ggg < 2:2002501/150‑1 (MQ=255) tttCTCCTGGCCTAGGATCTGGGTAGAAAGAAAAGTGCGCAGCGCGATCAGCGCTTCACGGTGTTCCATCGGCGACGGTTCCTGGTAGGGGGCCTGAGGCGGCGTGAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATC‑C‑ggggg < 1:1246308/151‑1 (MQ=255) tctcCTGGCCTAGGATCTGGGTAGAAAGAAAAGTGCGCAGCGCGATCAGCGCTTCACGGTGTTCCATCGGCGACGGTTCCTGGTAGGGGGCCTGAGGCGGCGTGAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATC‑C‑ggggggg < 1:1847699/151‑1 (MQ=255) tccccTGGCCTAGGATCGGGGTAGAAAGAAAAGTGCGCAGCGCGATCAGCGCTTCACGGTGTTCCATCGGCGACGGTTCCTGGTAGGGGGCCTGAGGCGGCGTGAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATC‑C‑ggggggg < 1:2293705/148‑1 (MQ=255) ctcCTGGCCTAGGATCTGGGTAGAAAGAAAAGTGCGCAGCGCGATCAGCGCTTCACGGTGTTCCATCGGCGACGGTTCCTGGTAGGGGGCCTGAGGCGGCGTGAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATC‑C‑gggggggg > 1:2032116/1‑150 (MQ=255) cTGGCCTAGGATCTGGGTAGAAAGAAAAGTGCGCAGCGCGATCAGCGCTTCACGGTGTTCCATCGGCGACGGTTCCTGGTAGGGGGCCTGAGGCGGCGTGAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATC‑C‑ggggggggcga > 1:419301/1‑147 (MQ=255) gggCCGAGGAGCTGGGGAGAAAGGAAAGGGCGCGGCGCGGTCAGCGCTGCACGGTGTTCCATGGGCGACGGTTCCTGGGAGGGGGCCGGAGGCGGCGTGGGGCAGCGGCCTTGGCAAGGGGGGATACTTTAATCTATC‑C‑ggggggggcgac < 2:3592403/150‑6 (MQ=255) ggCCTAGGATCTGGGTAGAAAGAAAAGTGCGCAGCGCGATCAGCGCTTCACGGTGTTCCATCGGCGACGGTTCCTGGTAGGGGGCCTGAGGCGGCGTGAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATC‑CGGGGGGGGcgacg > 2:2101024/1‑151 (MQ=255) aGGATCTGGGTAGAAAGAAAAGTGCGCAGCGCGATCAGCGCTTCACGGTGTTCCATCGGCGACGGTTCCTGGTAGGGGGCCTGAGGCGGCGTGAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATC‑CGGGGGGGGCGACGACCaa > 2:270420/1‑151 (MQ=255) ggATCTGGGTAGAAAGAAAAGTGCGCAGCGCGATCAGCGCTTCACGGTGTTCCATCGGCGACGGTTCCTGGTAGGGGGCCTGAGGCGGCGTGAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATC‑CGGGGGGGGCGACGACCAAt > 2:2948733/1‑151 (MQ=255) ggATCTGGGTAGAAAGAAAAGTGCGCAGCGCGATCAGCGCTTCACGGTGTTCCATCGGCGACGGTTCCTGGTAGGGGGCCTGAGGCGGCGTGAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATC‑CGGGGGGGGCGACGACCAAt > 1:1406856/1‑151 (MQ=255) gATCTGGGTAGAATGTTTAGTGCGCAGCGCGATCAGCGCTTCACGGTGTTCCATCGGCGACGGTTCCTGGTAGGGGGCCTGAGGCGGCGTGAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATC‑CGGGGGGGGCGACGACCAATg > 2:1237383/1‑151 (MQ=255) tCTGGGTAGAAAGAAAAGTGCGCAGCGCGATCAGCGCTTCACGGTGTTCCATCGGCGACGGTTCCTGGTAGGGGGCCTGAGGCGGCGTGAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATC‑CGGGGGGGGCGACGACCAATggg > 1:3444233/1‑150 (MQ=255) ggggAGCAAGAAGTGGGCGGAGCGCGATGGGGGCGTCACGGTGTTCCAGCGGCGACGGGTCGTGGTAGGGGGCCTGAGGCGGCGGGAGGCAGCAGCCTTGGGAAGGGGGGATACTTTAATCTATC‑CGGGGGGGGCGACGACCAATggcggc < 2:3064987/151‑1 (MQ=255) ggggaaagaagAGTGCGCAGGGGGATCGGGGCTTCAGGGTGTTCCATCGGGGGGGGTTCGTGGTAGGGGGCCGGGGGCGGCGTGAGGCGGCAGCCTTGGCAGGGGGGGATACTTTAATCTATC‑CGGGGGGGGCGACGACCAATGGcggcgg < 2:2217684/148‑1 (MQ=255) tAGAAAGAAAAGTGCGCAGCGCGATCAGCGCTTCACGGTGTTCCATCGGCGACGGTTCCTGGTAGGGGGCCTGAGGCGGCGTGAGGCAGCAGCCTTGGCAAGGGGGGATACTTTATTCTATC‑CGGGGGGGGCGACGACCAATGGCGGCggg > 2:722410/1‑151 (MQ=255) gagaaagagAAGGGGGCGGCGCGAGCAGCGCTTCACGGGGTGCCAGCGGGGAGGGTGCCGGGTAGGGGGCCGGAGGCGGCGTGAGGCAGAGGGCTTGGAAAGGGGGGATACTTTAATCTATC‑CGGGGGGGGCGACGACCAATGGCGGCggg < 2:4341575/150‑1 (MQ=255) agaaagaaAAGTGCGCAGCGCGATCAGCGCTTCACGGTGTTCCATCGGCGACGGTTCCTGGTAGGGGGCCTGAGGCGGCGTGAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATC‑CGGGGGGGGCGACGACCAATGGCGGCGGGt > 2:4728061/1‑151 (MQ=255) aagaaaAGTGCGCAGCGCGATCAGCGCTTCACGGTGTTCCATCGGCGACGGTTCCTGGTAGGGGGCCTGAGGCGGCGTGAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATC‑CGGGGGGGGCGACGACCAATGGCGGCGGGTaaa > 2:2339491/1‑151 (MQ=255) agaaaAGTGCGCAGCGCGATCAGCGCTTCACGGTGTTCCATCGGCGACGGTTCCTGGTAGGGGGCCTGAGGCGGCGTGAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATC‑CGGGGGGGGCGACGACCAATGGCGGCGGGTAAAt > 1:1156605/1‑151 (MQ=255) agaaaAGTGCGCAGCGCGATCAGCGCTTCACGGTGTTCCATCGGCGACGGTTCCTGGTAGGGGGCCTGAGGCGGCGTGAGGCAGCAGCCTCGGCAAGGGGGGATACTTTAATCTATC‑CGGGGGGGGCGACGACCAATGGCGGCGGGTagcc > 2:4076673/1‑148 (MQ=255) ggTGCGCGGGGCGATCAGCGCTTCACGGTGTCCCTCGGGGGCCGGTTCCTGGGAGGGGGCCTGAGGCGGCGTGAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATC‑CGGGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATc < 2:4705467/150‑1 (MQ=255) aGTGCGCAGCGCGATCAGCGCTTCACGGTGTTCCATCGGCGACGGTTCCTGGTAGGGGGCCTGAGGCGGCGTGAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATC‑CGGGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATc > 2:1770443/1‑151 (MQ=255) aGTGCGCAGCGCGATCAGCGCTTCACGGTGTTCCATCGGCGACGGTTCCTGGTAGGGGGCCTGAGGCGGCGTGAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATC‑CGGGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATc > 1:4991683/1‑151 (MQ=255) aGTGCGCAGCGCGATCAGCGCTTCACGGTGTTCCATCGGCGACGGTTCCTGGTAGGGGGCCTGAGGCGGCGTGAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATC‑CGGGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATc > 1:151801/1‑151 (MQ=255) gTGCGCAGCGCGATCAGCGCTTCACGGTGTTCCATCGGCGACGGTTCCTGGTAGGGGGCCTGAGGCGGCGTGAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATC‑CGGGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATCg > 1:476597/1‑151 (MQ=255) gcgcAGCGCGAGCAGCGCGTCAGGGTGTTCCAGCGGGGGGGGTTCCGGGTAGGGGGCGTGAGGCGGCGGGAGGGAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATC‑CGGGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATCGtt < 1:2971398/151‑1 (MQ=255) cgcAGCGCGATCAGCGCTTCACGGTGTTCCATCGGCGACGGTTCCTGGTAGGGGGCCTGAGGCGGCGTGAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATC‑CGGGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATCGTTg > 1:432207/1‑151 (MQ=255) aGCGCGATCAGCGCTTCACGGTGTTCCATCGGCGACGGTTCCTGGTAGGGGGCCTGAGGCGGCGTGAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATC‑CGGGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATCGTTGCAg > 2:1416790/1‑151 (MQ=255) gggggATCAGCGCTTCACGGTGGTCCATCGGCGGCGGTTCCGGGTAGGGGGCTGGAGGCGGCGTGAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATC‑CGGGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATCGTTGCAGa < 2:5061531/147‑1 (MQ=255) ggcgATCGGGGCTGCACGGTGTTCCGGCGGCGACGGTTCCTGGGAGGGGGCCTGGGGCGGGGTGGGGCAGCAGCCTTGGCAGGGGGGGATACTTTAATCTATC‑GGGGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATCGTTGCAGAc < 1:661617/150‑1 (MQ=255) cgcgATCAGCGCTTCACGGTGTTCCATCGGCGACGGTTCCTGGTAGGGGGCCTGAGGCGGCGTGAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATC‑CGGGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATGGTTGCAGAc > 2:4110027/1‑151 (MQ=255) cccgctCACCGCTCCGCGGTGTTCCATGGGCGACGGTTCCTGGTTGGGGGCCGGTGGCGGCGTGGGGCGGCAGCCTTGGCAAGGGGGGATCCTTTAATCAATC‑CGGGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATCGTTGCAGAc < 1:1313671/146‑1 (MQ=255) gcgATCAGCGCTTCTCGGTGTTCCATCGGCGACGGTTCCTGGTAGGGGGCCTGAGGCGGCGTGAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTCTC‑C‑GGGTGGGCGACGACCAATGGCGGCGGGTAAATTTATCGTTGCAGACgg > 2:3623115/1‑151 (MQ=255) gcgATCAGCGCTTCACGGTGTTCCATCGGCGACGGTTCCTGGTAGGGGGCCTGAGGCGGCGTGAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATC‑CGGGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATCGTTGCAGACg > 2:242387/1‑151 (MQ=255) aTCAGCGCTTCACGGTGTTCCATCGGCGACGGTTCCTGGTAGGGGGCCTGAGGCGGCGTGAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATC‑CGGGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGc > 1:608749/1‑151 (MQ=255) cAGCGCTTCACGGTGTTCCATCGGCGACGGTTCCTGGTAGGGGGCCTGAGGCGGCGTGAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATC‑CGGGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCt > 1:4389382/1‑151 (MQ=255) aGCGCTTCACGGTGTTCCATCGGCGACGGTTCCTGGTAGGGGGCCTGAGGCGGCGTGAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATC‑CGGGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTg > 1:4663454/1‑151 (MQ=255) aGCGCTTCACGGTGTTCCATCGGCGACGGTTCCTGGTAGGGGGCCTGAGGCGGCGTGAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATC‑CGGGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTg > 1:4663305/1‑151 (MQ=255) aGCGCTTCACGGTGTTCCATCGGCGACGGTTCCTGGTAGGGGACCTGAGGCGGCGTGAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATC‑CGGGGGGGGCGACGCCCAATGGCGGCGCGCAAATTTATCGTTGCAGACGGGCCTg > 2:5222815/1‑151 (MQ=255) gcTTCACGGTGTTCCATCGGCGACGGTTCCCGGTAGGGGGCCTGAGGCGGCGTGAGGCAGCAGCCTTGGCAAGGGGGGATAGTTTAATCTATC‑CGGGGGGGGCGACGACCAATGGCGGCGGGTACATTTATCGTTGCAGACGGGCCTGCgg > 2:3122228/1‑151 (MQ=255) gggcACGGTGTTCCATGGGCGACGGTTCTTGGTAGGGGGCCTGAGGCGGCGGGAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATC‑CGGGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCggg < 2:1840792/148‑1 (MQ=255) cTTCACGGTGTTCCATCGGCGACGGTTCCTGGTAGGGGGCCTGAGGCGGCGTGAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATC‑CGGGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCggg > 2:1413059/1‑151 (MQ=255) gggTGTTCCAGCGGCGGCGGTTCCTGGGAGGGGGCCTGAGGCGGCGTGAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATC‑CGGGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAg < 2:1880172/150‑1 (MQ=255) cGGTGTTCCATCGGCGACGGTTCCTGGTAGGGGGCCTGAGGTGGTGTGAGGCAGCTGCCTTGGCAAGGGGGGTTACTTTAATCTATC‑CGGGGGGGGTGACGACCAATGGCGGCGGGTAAAGTTATCGTTGCAGACGGGCCTGCGGGCATAg > 2:1316610/1‑151 (MQ=255) cGGTGTTCCATCGGCGACGGTTCCTGGTAGGGGGCCTGAGGCGGCGTGAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATC‑C‑GGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGa > 2:120967/1‑151 (MQ=255) gtTCCATCGGCGACGGTTCCTGGTAGGGGGCCTGAGGCGGCGTGAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATC‑CGGGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAAt > 1:4250415/1‑151 (MQ=255) cgaTCGGCGAGGGTTCCTGGAAGGGGGCCGGAGGCGGGGGGGGGCAGCAGCAGTGGAAAGGGGGGATACTTTAATCTATC‑CGGGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTc < 1:285333/149‑1 (MQ=255) gggcGGCGACGGTGGCGGGTGGGGGGTCGGAGGGGGCGGGAGGCAGCAGCCTTGGCAGGGGGGGATACTTTGATCTATC‑GGGGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTcc < 2:2787689/148‑1 (MQ=255) aTCGGGGAGGGTTGTTGGTAGGGGGCCGGAGGGGGGGGGACGCGGCAGCGTTGGCAGGGGGGGATACTTTAATCTATCGG‑GGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTccc < 1:3642437/151‑1 (MQ=255) gggCGACGGTTGCTGGTAGGGGGTCTGAGGCGGGGTGAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATC‑C‑GGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTCCCACg < 2:3244256/150‑1 (MQ=255) cGGCGACGGTTCCTGGTAGGGGGCCTGAGGCGGCGTGAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATC‑CGGGGGGGGCGCCGACCAATGGCGGCGGGGACATTTATCGTTGCAGACGGGCCTGCGGGCCAAGAAATGTccccc > 2:2655556/1‑149 (MQ=255) ggCGACGGTTCCTGGTAGGGGGCCTGAGGCGGCGTGAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATC‑CGGGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTCCCACg > 1:3873342/1‑151 (MQ=255) ggCGACGGTTCCTGGTAGGGGGCCTGAGGCGGCGTGAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATC‑CGGGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTCCCACg > 1:2936640/1‑151 (MQ=255) cGACGGTTCCTGGTAGGGGGCCTGAGGCGGCGTGAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATC‑CGGGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTCCCACGCa > 2:810343/1‑151 (MQ=255) ggTTCCTGGTAGGGGGCCTGAGGCGGCGTGAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATC‑CGGGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTCCCACGCAtggc > 2:3377211/1‑151 (MQ=255) ggTTCCTGGTAGGGGGCCTGAGGCGGCGTGAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATC‑CGGGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTCCCACGCAtggc > 2:2387198/1‑151 (MQ=255) ggTTCCTGGTAGGGGGCCTGAGGCGGCGTGAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATC‑C‑GGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTCCCACGCAtggct > 2:4717373/1‑151 (MQ=255) taccgggTAGGGGGCGTGAGGCGGCGTGAGGCAGCAGCCATGGCAAGGGGGGATACTTTAATCTATC‑CGGGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTCCCACGCAtggctg < 2:409832/146‑1 (MQ=255) ccTGGTAGGGGGCCTGAGGCGGCGTGAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATC‑CGGGGGGGGCGACGACCAATGGCGGCGGGTAAACTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTCCCACGCAtggctggc > 2:405721/1‑151 (MQ=255) ccTGGTAGGGGGCCTGAGGCGGCGTGAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATC‑C‑GGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTCCCACGCATGGCTGGcc > 1:4422807/1‑151 (MQ=255) gtGGGAGGGGGCCTGGGGCGGCGCGAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATGTATCGG‑GGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTCCCACGCATGGCTGGcc < 2:4981611/150‑1 (MQ=255) tGGTAGGGGGCCTGAGGCGGCGTGAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATC‑CGGGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTCCCACGCATGGCTGGCCt > 1:3032891/1‑151 (MQ=255) ggggaGGGGGCGGGGGGCGGCGTGAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTAGC‑CGGGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTCCCACGCATGGCTGGCCt < 2:1268778/147‑1 (MQ=255) tAGGGGGCCTGAGGCGGCGTGAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATC‑CGGGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCTAAGAAATGTCCCACGCCTGGCTGGCCTTTg > 2:2329953/1‑151 (MQ=255) tAGGGGGCCTGAGGCGGCGTGAGGCAGCAGCCTTGGCAAGGGGGGATACCCTAATCTATC‑CGGGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATCCTTGCAGACGGGCCTGCGGGCAAGGGAAAGGTCCACCCCTGGCTGGCCttcg > 2:963275/1‑149 (MQ=255) aGGGAGCCTGAGGCGGCGTGAGACAGCATCCTTGACAAGGGGTGATACTTACTCCTACC‑CGGGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTCCCACGCATGGCTGGCCTTTGc < 2:2768036/151‑1 (MQ=255) ggggCCTGAGGCGGCGTGAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATC‑CGGGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTCCCACGCATGGCTGGCCTTTGCCt > 1:3676804/1‑151 (MQ=255) cTGAGGCGACGTGAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATC‑CGGGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGACATGTCCCACGCATCGCTGGCCTTTGCCTGACgg > 2:3119563/1‑151 (MQ=255) tGAGGCGGCGTGAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATC‑CGGGGGGGGCGACGACCAACGGCGGCGGGTAAATCTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTCCCACGCATGGCTCGCCTTTGCCTGATggc > 2:1929539/1‑150 (MQ=255) gAGGCGGCGTGAGGCAGCGGCCTTGGCAAGGGGGGATACTTTGAGCGATC‑CGGGGGGGGCGACGACCATTGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTCCCACGCATGGCTGGCCTTTGCCTGATGGTc < 2:2021017/151‑1 (MQ=255) gggcggcGTGGGGCAGCAGCCTGGGCAAGGGGGGATACTTTAATGTATC‑CGGGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTCCCACGCATGGCTGGCCTTTGCCTGATGGTcc < 1:117632/150‑1 (MQ=255) agcgggcgggcgGCAGCGGCCGTGGCAAGGGGGGATACTTTAGTCTATC‑CGGGGGGGGCGACGACCAATGGCGGCGGGTAAATTTAGCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTCCCACGCATGGCTGGCCTTTGCCTGATGGTcc < 2:4837836/147‑1 (MQ=255) ggcgTGAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATC‑CGGGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTCCCACGCATGGCTGGCCTTTGCCTGATGGTCCGTGa > 1:3919397/1‑151 (MQ=255) cgaggggcggcAGCGTGGGCACGGGGGGCGATGTTAGTCGATCGG‑GGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTCCCACGCATGGCTGGCCTTTGCCTGATGGTCCGTGACg < 1:4885683/146‑1 (MQ=255) gTGAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATC‑CGGGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTGCCACGCATGGCTGGCCTTTGCCTGATGGTCCGTGACgg > 2:105284/1‑151 (MQ=255) gTGAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATC‑CGGGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTCCCACGCATGGCTGGCCTTTGCCTGATGGTCCGTGACgg > 1:4167465/1‑151 (MQ=255) gAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATC‑CGGGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTCCCACGCATGGCTGGCCTTTGCCTGATGGTCCGTGACGGCg > 1:3865381/1‑151 (MQ=255) aGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATC‑CGGGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTCCCACGCATGGCTGGCCTTTGCCTGATGGTCCGTGACGGCGt < 2:2900222/151‑1 (MQ=255) ggCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATC‑CGGGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTCCCACGCATGGCTGGCCTTTGCCTGATGGTCCGTGACGGCGTg > 2:3971000/1‑151 (MQ=255) ggcagcCTTGGCAAGGGGGGATACTTTAATCTAGC‑CGGGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTCCCACGCATGGCTGGCCTTTGCCTGATGGTCCGTGACGGCGTGCTg < 1:2686317/150‑1 (MQ=255) agcagcCTGGGAAAGGGGGGAGACTTTAATCTGTCGG‑GGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTCCCACGCATGGCTGGCCTTTGCCTGATGGTCCGTGACGGCGTGCTg < 1:2685333/151‑1 (MQ=255) agcCTTGGCAAGGGGGGATACTTTAATCTATC‑CGGGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTCCCACGCATGGCTGGCCTTTGCCTGATGGTCCGTGACGGCGTGCTGgcc > 2:1769055/1‑150 (MQ=255) gcCTTGGCAAGGGGGGATACTTTAATCTATC‑CGGGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTCCCACGCATGGCTGGCCTTTGCCTGATGGTCCGTGACGGCGTGCTGgcgc > 2:4209533/1‑151 (MQ=255) tttgctaaGGGGGGATACGTTACGCTCTC‑CGGGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTCCCACGCATGGCTGGCCTTTGCCTGATGGTCCGTGACGGCGTGCTGGCGCCt < 1:357206/145‑1 (MQ=255) cTTGGCAAGGGGGGATACTTTAATCTATC‑CGGGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCGGCGGGCAAAGAAATGTCCCACGCATGGCTGGCCTTTGCCTGATGGTCCGTGACGGCGTGCTGGCGccc > 2:3507843/1‑150 (MQ=255) ggCAAGGGGGGATACTTTAATCTATC‑CGGGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTCCCACGCATGGCTGGCCTTTGCCTGATGGTCCGTGACGGCGTGCTGGCGCCTGCt > 1:3193504/1‑151 (MQ=255) gCAAGGGGGGATACTTTAATCTATC‑CGGGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTCCCACGCATGGCTGGCCTTTGCCTGATGGTCCGTGACGGCGTGCTGGCGCCTGCtt > 2:4802508/1‑151 (MQ=255) gggggATACTTTAATCTATC‑CGGGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTCCCACGCATGGCTGGCCTTTGCCTGATGGTCCGTGACGGCGTGCTGGCGCCTGCTTGTGCt > 2:1672806/1‑151 (MQ=255) gggATACTTTAATCTATC‑CGGGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTCCCACGCATGGCTGGCCTTTGCCTGATGGTCCGTGACGGCGTGCTGGCGCCTGCTTGTGCttt > 1:4395068/1‑151 (MQ=255) ggATACTTTAATCTATC‑CGGGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTCCCACGCATGGCTGGCCTTTGCCTGATGGTCCGTGACGGCGTGCTGGCGCCTGCTTGTGCtttt > 1:2652457/1‑151 (MQ=255) gATACTTTAATCTATC‑CGGGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTCCCACGCATGGCTGGCCTTTGCCTGATGGTCCGTGACGGCGTGCTGGCGCCTGCTTGTGCTTTTc < 1:619899/151‑1 (MQ=255) aCTTTAATCTATC‑CGGGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTCCCACGCATGGCTGGCCTTTGCCTGATGGTCCGTGACGGCGTGCTGGCGCCTGCTTGTGCTTTTCggg > 2:398333/1‑150 (MQ=255) aCTTTAATCTATC‑CGGGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTCCCACGCATGGCTGGCCTTTGCCTGATGGTCCGTGACGGCGTGCTGGCGCCTGCTTGTGCTTTTCGGa > 2:4409355/1‑151 (MQ=255) cTTTAATCTATC‑CGGGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTCCCACGCATGGCTGGCCTTTGCCTGATGGTCCGTGACGGCGTGCTGGCGCCTGCTTGTGATTTTCGGAc > 2:614221/1‑151 (MQ=255) tCTATC‑CGGGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTCCCACGCATGGCTGGCCTTTGCCTGATGGTCCGTGACGGCGTGCTGGCGCCTGCTTGTGCTTTTCGGACAAGCag > 1:3608082/1‑151 (MQ=255) tATC‑CGGGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTCCCACGCATGGCTGGCCTTTGCCTGATGGTCCGTGACGGCGTGCTGGCGCCTGCTTGTGCTTTTCGGACAAGCagga > 2:3052857/1‑151 (MQ=255) | ACCAGTTTCTCCTGGCCTAGGATCTGGGTAGAAAGAAAAGTGCGCAGCGCGATCAGCGCTTCACGGTGTTCCATCGGCGACGGTTCCTGGTAGGGGGCCTGAGGCGGCGTGAGGCAGCAGCCTTGGCAAGGGGGGATACTTTAATCTATC‑C‑GGGGGGGCGACGACCAATGGCGGCGGGTAAATTTATCGTTGCAGACGGGCCTGCGGGCAAAGAAATGTCCCACGCATGGCTGGCCTTTGCCTGATGGTCCGTGACGGCGTGCTGGCGCCTGCTTGTGCTTTTCGGACAAGCAGGA > CP009974/3929823‑3930118 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |