New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	KT2440	= 2390060	40 (0.900)	3 (0.070)	3/238	4.8	6.3%	coding (2648/3630 nt)	bvgS	Virulence sensor protein BvgS
	?	KT2440	= 4525914	51 (1.210)					coding (1/1290 nt)	puuB_5	Gamma‑glutamylputrescine oxidoreductase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GGGTACCGACATCCTCCAGGCTCTTCATGGACAGGCTGCCGCCCATCATTTCGCACAGGTTGCGGCAGATGGCCAGGCCCAGCCCGGTACCGGCGCGGGCGCCCTGGCTGTGCGGGTTGGCCTGGATGAACGGGTTGAACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  KT2440/2389920‑2390060 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgaacaTGCGGGATTTCCGTGAAAATTATTATGTTTATTTTCATGAAAAGTTAGCAGTTAAATTTCACGTTGCCAATGTGTTGGTCGGGGTTTGTGGTTTGCCTATTGTTAATGTGCTGCCTGGGCTGGCCTCTTCGC  <  KT2440/4525914‑4525783                                                                                                                                                                                                                                                                                   GGGTACCGACATCCTCCAGGCTCTTCATGGACAGGCTGCCGCCCATCATTTCGCACAGGTTGCGGCAGATGGCCAGGCCCAGCCCGGTACCGGCGCGGGCGCCCTGGCGGTGCGGGTTGGCCTGGATGAACGGGT                                                                                                                                            >  8:183330/1‑135       CGACATCCTCCAGGCTCTTCATGGACAGGCTGCCGCCCATCATTTCGCACAGGTTGCGGCAGATGGCCAGGCCCAGCCCGGTACCGGCGCGGGCGCCCTGGCTGTGCGGGTTGGCCTGGATGAACGGGTTGAAC                                                                                                                                       <  7:207148/134‑1               TCCAGGCTCTTCATGGACAGGCTGCCGCCCATCATTTCGCACAGGTTGCGGCAGATGGACAGGCCCCGCCCGGTCCAGGCGCGGGCGCCCTGGCTGTGCGGGGTGGCCGGGATGAACTGTTTGAACCTGCGct                                                                                                                                >  7:212790/1‑131                                                       ACAGGTTGCGGCAGATGGCCAGGCCCAGCCCGGTACCGGCGCGGGCGCCCTGGCTGTGCGGGTTGGCCTGGATGAACGGGTTG                                                                                                                                          <  1:213405/83‑1                                                       ACAGGTTGCGGCAGATGGCCAGGCCCAGCCCGGTACCGGCGCGGGCGCCCTGGCTGTGCGGGTTGGCCTGGATGAACGGGTTG                                                                                                                                          >  2:213405/1‑83                                                                        GCCAGGCCCAGCCCGGTACCGGCGCGGGCGCCCTGGCTGTGCGGGTTGGCCTGGATGAACGGGTTGAACATGCGGGATTTCCGTGAAAATTATTATGTTTATTTTCATGAAAAGTTAGCAGTTAAATTTCACGTT                                                                     >  4:280507/1‑135                                                                                    CCGGTACCGGCGCGGGCGCCCTGGCTGTGCGGGTTGGCCTGGATGAACGGGTTGAACATGCGGGATTTCCGTGAAAATTATTATGTTTATTTTCATGAAAAGTTAGCAGTTAAATTTCACGTTGCCAATGTGTTG                                                         <  3:280507/135‑1                                                                                                                                           ACATGCGGGATTTCCGTGAAAATTATTATGTTTATTTTCATGAAAAGTTAGCAGTTAAATTTCACGTTGCCAATGTGTTGGTCGGGGTTTGTGGTTTGCCTATTGTTAATGTGCTGCCTGGGCTGGCCTCTTCGC  >  4:149414/1‑135                                                                                                                                                                                                                                                                                   GGGTACCGACATCCTCCAGGCTCTTCATGGACAGGCTGCCGCCCATCATTTCGCACAGGTTGCGGCAGATGGCCAGGCCCAGCCCGGTACCGGCGCGGGCGCCCTGGCTGTGCGGGTTGGCCTGGATGAACGGGTTGAACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  KT2440/2389920‑2390060 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgaacaTGCGGGATTTCCGTGAAAATTATTATGTTTATTTTCATGAAAAGTTAGCAGTTAAATTTCACGTTGCCAATGTGTTGGTCGGGGTTTGTGGTTTGCCTATTGTTAATGTGCTGCCTGGGCTGGCCTCTTCGC  <  KT2440/4525914‑4525783

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.