New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	KT2440	= 5074639	83 (1.030)	3 (0.040) +TCG	3/254	8.3	3.6%	coding (726/1236 nt)	CJ019_04774	Aspartate kinase
	?	KT2440	5074640 =	83 (1.030)					coding (725/1236 nt)	CJ019_04774	Aspartate kinase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GGATCTTGAAGGCCACGCCCGGGGTATCCGGCACGCCGCGAATGGTCAGCTTTGCTTCATCACGGTTGAAGGCGATACCGGAAATGATCGGCTGTTCCATGGATTCCTCTTCATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  KT2440/5074524‑5074639 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATGGTAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCA  >  KT2440/5074640‑5074688                                                                                                                     |||                                                  GGATCTTGAAGGCCACGCCGGGGGTATCGGGTACGCCACGGATGGTCAGCTTGGCTTCGTCGCGGTTGAAGGCGATGCCGGAGATGATCGGCTGTTCCATGGATTCCTCTTCATCATCGATAGTAATGAGGGTGCCC                                 <  8:228212/137‑1                                                AGCTTGGCTTCGTCGCGGTTGAAGGCGATGCCGGAGATGATCGGCTGTTCCATGGATTCCTCTTCATCATCGATAGTAATGAGGGTGCCCGGACCCTCCTGGAAGCTGTGCAGCACGCGCA  >  1:212938/1‑121                                                AGCTTGGCTTCGTCGCGGTTGAAGGCGATGCCGGAGATGATCGGCTGTTCCATGGATTCCTCTTCATCATCGATAGTAATGAGGGTGCCCGGACCCTCCTGGAAGCTGTGCAGCACGCGCA  <  2:212938/121‑1                                                                                                                     |||                                                  GGATCTTGAAGGCCACGCCCGGGGTATCCGGCACGCCGCGAATGGTCAGCTTTGCTTCATCACGGTTGAAGGCGATACCGGAAATGATCGGCTGTTCCATGGATTCCTCTTCATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  KT2440/5074524‑5074639 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATGGTAATGAGGGTACCCGGACCCTCCTTGAAGCTGTGCAGCACGCGCA  >  KT2440/5074640‑5074688

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.