Predicted mutation
evidence seq id position mutation freq annotation gene description
RA KT2440 44,293 Δ1 bp 100% intergenic (+124/‑367) oprD_1 → / → czcR_2 Porin D/Transcriptional activator protein CzcR

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*KT244044,2930T.87.5% 138.0 / 9.8 40intergenic (+124/‑367)oprD_1/czcR_2Porin D/Transcriptional activator protein CzcR
Reads supporting (aligned to +/- strand):  ref base T (2/0);  major base . (12/23);  minor base G (3/0);  total (17/23)
Fisher's exact test for biased strand distribution p-value = 5.39e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

CTGGGCCAGTTATCCATTGGCGGGTCCTGTTAGTAAAACGAGCATTACGCATTCACCTTGAGTGGCTTAAGTGCTCCTTTGGTAAAAGGTGGATATTTGGCGCCCATTGGGCGCCTTTTTTTTTGCCTAAAATTCAAGTAGGCGTTCGATTGTACGCATCGCATGCCGGTGAAGTTCATGACTACACCAATGACCAGTCTCTTCAATGTGAGCGACCTCGCCGTCATCTGAGCGGAACGA  >  KT2440/44178‑44417
                                                                                                                   |                                                                                                                            
cTGGGCCAGTTATCCATTGGCGGGTCCTGTTAGTAAAACGAGCATTACGCATTCACCTTGAGTGGCTTAAGTGCTCCTTTGGTAAAAGGTGGATATTTGGCGCCCATTGGGCGCC‑TTTTTTTTGCCTAAAAtt                                                                                                            >  1:151403/1‑133 (MQ=255)
  gggCCAGTTATCCATTGGCGGGTCCTGTTAGTAAAACGAGCATTACGCATTCACATTGAGTGGCATAAGTGATCCTTTGCAAAATGGTGGATATTTGGCGCCCATTGGGAGCAGTTTTTTTTG‑CGAAAATTCaa                                                                                                         >  3:137358/1‑134 (MQ=255)
     ccAGTTATCCATTGGCGGGTCCTGTTAGTAAAACGAGCATTACGCATTCACCTTGAGTGGCTTAAGTGCTCCTTTGGTAAAAGGTGGATATTTGGCGCCCATTGGGCGCC‑TTTTTTTTGCCTAAAATTCAAGTAg                                                                                                     <  4:262837/135‑1 (MQ=255)
       aGTTATCCATTGGCGGGTCCTGTTAGTAAAACGAGCATTACGCATTCACCTTGAGTGGCTTAAGTGCTCCTTTGGTAAAAGGTGGATATTTGGCGCCCATTGGGCGCC‑TTTTTTTTGCCTAAAATTCAAGTAGGc                                                                                                   <  5:38856/135‑1 (MQ=255)
       aGTTATCCATTGGCGGGTCCTGTTAGTAAAACGAGCATTACGCATTCACCTTGAGTGGCTTAAGTGCTCCTTTGGTAAAAGGTGGATATTTGGCGCCCATTGGGCGCC‑TTTTTTTTGCCTAAAATTCAAGTAGGc                                                                                                   <  5:95255/135‑1 (MQ=255)
       aGTTATCCATTGGCGGGTCCTGTTAGTAAAACGAGCATTACGCATTCACCTTGAGTGGCTTAAGTGCTCCTTTGGTAAAAGGTGGATATTTGGCGCCCATTGGGCGCC‑TTTTTTTTGCCTAAAATTAAAGTAGGc                                                                                                   >  4:144113/1‑135 (MQ=255)
                      ggTCCTGTTAGTAAAACGAGCATTACGCATTCACCTTGAGTGACTTAAGTGCTCCTTTGGTAAAAGGTGGATATTTGGCGCCCATTGGGCGCC‑TTTTTTTTGCCTAAAATTCAAGTAGGCGTTCGATTGTAcgca                                                                                    <  2:239271/135‑1 (MQ=255)
                                 tAAAACGAGCATTACGCATTCACCTTGAGTGGCTTAAGTGCTCCTTTGGTAAAAGGTGGATATTTGGCGCCCATTGGGCGCC‑TTTTTTTTGCCTAAAATTCAAGTAGGCGTTCGATTGTACGCATCGCATGCCg                                                                          <  3:306561/134‑1 (MQ=255)
                                 tAAAACGAGCATTACGCATTCACCTTGAGTGGCTTAAGTGCTCCTTTGGTAAAAGGTGGATATTTGGCGCCCATTGGGCGCC‑TTTTTTTTGCCTAAAATTCAAGTAGGCGTTCGATTGTACGCATCGCATGCCg                                                                          <  3:231771/134‑1 (MQ=255)
                                        aGCATTACGCATTCACCTTGAGTGGCTTAAGTGCTCCTTTGGTAAAATGTGGATATTTGGCGCCCATTGGGCGCC‑TTTTTATTGCCTAAAATTCAAGTAGGCGTTCGATTGTACGCATCGCATGCCGGTGAAGtt                                                                  <  7:233468/135‑1 (MQ=255)
                                        aGCATTACGCATTCACCTTGAGTGGCTTAAGTGCTCCTTTGGTAAAAGGTGGATATTTGGCGCCCATTGGGCGCC‑TTTTTTTTGCCTAAAATTCAAGTAGGCGTTCGATTGTACGCATAGCATGCCGGTGAAGtt                                                                  <  7:217890/135‑1 (MQ=255)
                                           aTTACGCATTCACCTTGAGTGGCTTAAGTGCTCCTTTGGTAAAAGGTGGATATTTGGCGCCCATTGGGCGCC‑TTTTTTTTGCCTAAAATTCAAGTAGGCGTTCGATTGTACGCATCGCATGCCGGTGAAGTTCAt                                                               <  3:144113/135‑1 (MQ=255)
                                             tACGCATTCACCTTGAGTGGCTTAAGTGCTCCTTTGGTAAAAGGTGGATATTTGGCGCCCATTGGGCGCCTTTTTTTTT‑CCTAAAATTAAAGTAGGCGTTCGATTGTACGCATCGCATGCCGGGGAAGTTCATGa                                                             >  8:165329/1‑135 (MQ=255)
                                             tACGCATTCACCTTGAGTGGCTTAAGTGCTCCTTTGGTAAAAGGTGGATATTTGGCGCCCATTGGGCGCC‑TTTTTTTTGCCTAAAATTCAAGTAGGCGTTCGATTGTACGCATCGCATGCCGGTGAAGTTCATGa                                                             <  6:149524/135‑1 (MQ=255)
                                             tACGCATTCACCTTGAGTGGCTTAAGTGCTCCTTTGGTAAAAGGTGGATATTTGGCGCCCATTGGGCGCC‑TTTTTTTTGCCTAAAATTCAAGTAGGCGTTCGATTGTACGCATCGCATGCCGGTGAAGTTCATGa                                                             >  3:344233/1‑135 (MQ=255)
                                             tACGCATTCACCTTGAGTGGCTTAAGTGCTCCTTTGGTAAAAGGTGGATATTTGGCGCCCATTGGGCGCC‑TTTTTTTTGCCTAAAATTCAAGTAGGCGTTCGATTGTACGCATCGCATGCCGGTGAAGTTCATGa                                                             <  2:248757/135‑1 (MQ=255)
                                             tACGCATTCACCTTGAGTGGCTTAAGTGCTCCTTTGGTAAAAGGTGGATATTTGGCGCCCATTGGGCGCC‑TTTTTTTTGCCTAAAATTCAAGTAGGCGTTCGATTGTACGCATCGCATGCCGGTGAAGTTCATGa                                                             <  4:36841/135‑1 (MQ=255)
                                                 cATTCACCTTGAGTGGCTTAAGTGCTCCTTTGGTAAAAGGTGGATATTTGGCGCCCATTGGGCGCC‑TTTTTTTTGCCTAAAATTCAAGTAGGCGTTCGATTGTACGCATCGCATGCCGGTGAAGTTCATGACTac                                                         <  2:151403/135‑1 (MQ=255)
                                                       ccTTGAGTGGCTTAAGTGCTCCTTTGGTAAAAGGTGGATATTTGGCGCCCATTGGGCGCC‑TTTTTTTTGCCTAAAATTCAAGTAGGCGTTCGATTGTACGCATCGCATGCCGGTGAAGTTCATGACTACACCaa                                                    >  5:87972/1‑134 (MQ=255)
                                                            aGTGGCTTTAGTGCTCCTTTTGTAAAAGGTGGTTATTTGGCGCCGATTTGGCGTC‑TTTTTTTTGCCTAAAATTCAAGTAGGCGTTCGATTGTACGCATCGCTTGCGGGTGAAGTTCATGACTACACCAATGAcc                                               <  4:137358/134‑1 (MQ=255)
                                                            aGTGGCTTAAGTGCTCCTTTGGTAAAAGTTGGATTTTTGGCCCCCATTGGGCGCC‑GTTTTTTTGCCTAAAATTCAAGTATGCGTTCGATTGTACGCATCGCATGCCGGTGAAGTTCATGACTACACCAATGAc                                                <  4:217106/133‑1 (MQ=255)
                                                            aGTGGCTTAAGTGCTCCTTTGGTAAAAGGTGGATATTTGGCGCCCATTGGGCGCC‑TTTTTTTTGCCTAAAATTCAAGTAGGCGTTCGATTGTACGCATCGCATGCCGGTGAAGTTCATGACTACACCAATGAcc                                               <  6:87972/134‑1 (MQ=255)
                                                             gTGGCTTAAGTGCTCCTTTGGTAAAAGGTGGATATTTGGCGCCCATTGGGCGCCTTTTTTTTTGCCTTAAATTCAAGTAGGCGGTCGATTGTACGCATCGCATGCCGGTGAAGTTCATGACTACAACAATGACCa                                              >  1:89391/1‑135 (MQ=255)
                                                              tGGCTTAAGTGCTCCTTTGGTAAAAGGTGGATATTTGGCGCCCATTGGGCGCC‑TTTTTTTTGCCTAAAATTCAAGTAGGCGTTCGATTGTACGCATCGCATGCCGGTGAAGTTCATGACTACACCAATGACCAGt                                            <  1:28908/135‑1 (MQ=255)
                                                               ggCTTAAGTGCTCCTTTGGTAAAAGGTGGATATTTGGCGCCCATTGGGCGCC‑TTTTTTTTGCCTAAAATTAATGTAGGCGTTCGTTTGTACGCATCGCTTGCCGGGGAAGTTAATTAGTACACCAATGCCCAGta                                           >  3:305721/1‑134 (MQ=255)
                                                                   tAAGTGCTCCTTTGGTAAAAGGTGGATATTTGGCGCCCATTGGGCGCC‑GTTTTTTTGGCTAAAATTAAATTAGGCGTTCGGTTGTACGCCTCGCATGCCGGTGAAGTTGATTGCTACACCAAAGACCAGtgtcg                                        >  3:217986/1‑133 (MQ=255)
                                                                   tAAGTGCTACTTTGGTAAAATCTGGATATTTGGCGCCCATTGGGCGCGGTTTTTTTTG‑CTAAAATTAAATTAGGCGTTCTATAGTAAGCCTAGCCTTACGCTGAAATTAATGACAAACCCAATAACCACtctca                                        >  2:362004/1‑133 (MQ=255)
                                                                    aaGTGCTCCTTTGGTAAAAGGTGGATATTTGGCGCCCATTGGGCGCC‑TTTTTTTTGCCTAAAATTCAAGTAGGCGTTCGATTGTACGCATCGCATGCCGGAGAAGTTCATGACTACACCAATGACCAGTCTCtt                                       >  8:285421/1‑134 (MQ=255)
                                                                     aGTGCTCCTTTGGTAAAAGGTGGATATTTGGCGCCCATTGGGCGCC‑TTTTTTTTGCCTAAAATTCAAGTAGGCGTTCGATTGTACGCATCGCATGCCGGTGAAGTTCATGACTACACCAATGACCAGTCTCTTCa                                     >  7:386892/1‑135 (MQ=255)
                                                                     aGTGCTCCTTTGGTAAAAGGTGGATATTTGGCGCCCATTGGGCGCC‑TTTTTTTTGCCTAAAATTCAAGTAGGCGTTCGATTGTAAGGATCGCATGCCGGTGAAGTTCATGACTACACCAATGACCAGTCTCttga                                     >  7:373312/1‑133 (MQ=255)
                                                                     aGTGCTCCTTTGGTAAAAGGTGGATATTTGGCGCCCATTGGGCGCC‑TTTTTTTTGCCTAAAATTCAAGTAGGCGGTCGATTGTACGCATCGCATGCCGGTGAAGTTCATGACTACACCAATGACCAGTCTCTTCa                                     >  6:199511/1‑135 (MQ=255)
                                                                              tttgTAAAACGGGGCTAATTTGCGCCCATTGGGCGCC‑GTTTTTTTGCCTAAAATTCAAGTAGGCGTTCGATTGTACGCATCGCATGCCGGTGAAGTTCATGACTACACCAATGACCAGTCTCTTCAATGTGAGCg                            <  4:305721/132‑1 (MQ=255)
                                                                                   aaaaGGTGGATATTTGGCGCCCATTGGGCGCC‑TTTTTTTTGCCTAAAATTCAAGTAGGCGTTCGATTGTACGCATCGCATGCCGGTGAAGTTCATGACTACACCAATGACCAGTCTCTTCAATGTGAGCGACCTc                       <  3:309475/135‑1 (MQ=255)
                                                                                              atTTGGCGCCCATTGGGCGCC‑TTTTTTTTGCCTAAAATTCAAGTAGGCGTTCGATTGTACGCATCGCATGCCGGTGAAGTTCATGACTACACCAATGACCAGTCTCTTCAATGTGAGCGACCTCGCCGTCATCTg            <  5:71456/135‑1 (MQ=255)
                                                                                              atTTGGCGCCCATTGGGCGCC‑TTTTTTTTGCCTAAAATTCAAGTAGGCGTTCGATTGTACGCATCGCATGCCGGTGAAGTTCATGACTACACCAATGACCAGTCTCTTCAATGTGAGCGACCTCGCCGTCATCTg            >  6:71456/1‑135 (MQ=255)
                                                                                              atTTGGCGCCCATTGGGCG‑CGGTTTTTTTGCCTAAAATTCAAGTAGGCGTTCGATTGTACGCATCGCATGCCGGTGAAGTTCATGACTACACCAATGACCAGTCTCTTCAATGTGAGCGACCCCGCCGTCATc              >  7:129355/1‑133 (MQ=255)
                                                                                                    cgcCCATTGGGCGCC‑TTTTTTTTGCCTAAAATTCAAGTAGGCGTTCGATTGTACGCATCGCATGCCGGTGAAGTTCATGACTACACCAATGACCAGTCTCTTCAATGTGAGCGACCTCGCCGTCATCTGAGCgg       <  7:64171/134‑1 (MQ=255)
                                                                                                    cgcCCATTGGGCGCC‑TTTTTTTTGCCTAAAATTCAAGTAGGCGTTCGATTGTACGCATCGCATGCCGGTGAAGTTCATGACTACACCAATGACCAGTCTCTTCAATGTGAGCGACCTCGCCGTCATCTGAGCgg       <  8:135307/134‑1 (MQ=255)
                                                                                                     gcCGATTGGGCGCC‑TTTTTTTTGCCTAAAATTCAAGTACGGGTTCGTTTGTACGCATCGCATGCCGGGGAAGTTAATGACGACACCAAAGACCAGTCTCTACAATGTGAGCGACCTCGCCGTCATCTGAGCgg       >  2:257042/1‑133 (MQ=255)
                                                                                                        cATTGGGCGCC‑TTTTTTTTGCCTAAAATTCAAGTAGGCGTTCGATTGTACGCATCGCATGCCGGTGAAGTTCATGACTACACCAATGACCAGTCTCTTCAATGTGAGCGACCTCGCCGTCATCTGAGCGGAACGa  <  2:95354/135‑1 (MQ=255)
                                                                                                                   |                                                                                                                            
CTGGGCCAGTTATCCATTGGCGGGTCCTGTTAGTAAAACGAGCATTACGCATTCACCTTGAGTGGCTTAAGTGCTCCTTTGGTAAAAGGTGGATATTTGGCGCCCATTGGGCGCCTTTTTTTTTGCCTAAAATTCAAGTAGGCGTTCGATTGTACGCATCGCATGCCGGTGAAGTTCATGACTACACCAATGACCAGTCTCTTCAATGTGAGCGACCTCGCCGTCATCTGAGCGGAACGA  >  KT2440/44178‑44417

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑