| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,169,693 | C→T | pseudogene (475/475 nt) | gatR ← | pseudogene, repressor for gat operon, interrupted by IS3, split galactitol utilization operon repressor, fragment 2, split galactitol utilization operon repressor, interrupted |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,169,693 | 0 | C | T | 100.0% | 119.4 / NA | 37 | pseudogene (475/475 nt) | gatR | pseudogene, repressor for gat operon, interrupted by IS3, split galactitol utilization operon repressor, fragment 2, split galactitol utilization operon repressor, interrupted |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (19/18); total (19/18) | |||||||||||
CCGGCAGCGTTGCGTTGTCGATTACCACCAGATTGTCCACTGTTGCGTTAATCAAACTATTCTCTCTTGAACCAGGGAGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATACTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑GTTTATCCACCTCTGACACAGCATCATCGGTAATAATAATGTCAATTTTTTCGATTGGTAGTACCTGATTAAAACCGCGACGGTTAAATTTCGAT > NC_000913/2169561‑2169828 | ccGGCAGCGTTGCGTTGTCGATTACCACCAGATTGTCCACTGTTGCGTTAATCAAACTATTCTCTCTTGAACCAGGGAGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATATTACAcc < 2:20674/139‑1 (MQ=255) cGATTACCACCAGATTGTCCACTGTTGCGTTAATCAAACTATTCTCTCTTGAACCAGGGAGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATATTACACCGTAATTAATTTTACCcgc < 1:155195/139‑1 (MQ=255) tACCACCAGATTGTCCACTGTTGCGTTAATCAAACTATTCTCTCTTGAACCAGGGAGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATATTACACCGTAATTAATTTTACCCGCGtct > 2:251090/1‑139 (MQ=255) gTCCACTGTTGCGTTAATCAAACTATTCTCTCTTGAACCAGGGAGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCa > 2:564027/1‑139 (MQ=255) tCCACTGTTGCGTTAATCAAACTATTCTCTCTTGAACCAGGGAGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑g > 2:776164/1‑139 (MQ=255) tCCACTGTTGCGTTAATCAAACTATTCTCTCTTGAACCAGGGAGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑g > 2:50768/1‑139 (MQ=255) tCCACTGTTGCGTTAATCAAACTATTCTCTCTTGAACCAGGGAGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑g > 2:141018/1‑139 (MQ=255) ttGCGTTAATCAAACTATTCTCTCTTGAACCAGGGAGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑GTTTATcc < 2:329989/139‑1 (MQ=255) ttGCGTTAATCAAACTATTCTCTCTTGAACCAGGGAGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑GTTTATcc < 1:633809/139‑1 (MQ=255) cGTTAATCAAACTATTCTCTCTTGAACCAGGGAGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCAGGTTTATCCAc > 1:161021/1‑139 (MQ=255) cGTTAATCAAACTATTCTCTCTTGAACCAGGGAGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑GTTTATcc > 2:223894/1‑136 (MQ=255) cGTTAATCAAACTATTCTCTCTTGAACCAGGGAGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑GTTTATcc < 1:223894/136‑1 (MQ=255) cGTTAATCAAACTATTCTCTCTTGAACCAGGGAGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑GTTTATCCAcc > 2:239116/1‑139 (MQ=255) cGTTAATCAAACTATTCTCTCTTGAACCAGGGAGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATATTACACCGTAATTAATTATACCCGCGTCTTCTGCAATGCCA‑GTTTATCCAcc < 2:7733/139‑1 (MQ=255) tctctcTTGAACCAGGGAGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑GTTTATCCACCTCTGACACAGcatca < 1:251090/139‑1 (MQ=255) tctctcTTGAACCAGGGAGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑GTTTATCCACCTCTGACACAGcatca > 1:150052/1‑139 (MQ=255) tctctTGAACCAGGGAGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑GTTTATCCACCTCTGACACAGCatcatc > 2:366539/1‑139 (MQ=255) tctTGAACCAGGGAGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑GTTTATCCACCTCTGACACAGCATCATCgg < 1:198696/139‑1 (MQ=255) ctTGAACCAGGGAGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑GTTTATCCACCTCTGACACAGCATCATCGGt < 2:270189/139‑1 (MQ=255) tGAACCAGGGAGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑GTTTATCCACCTCTGACACAGCATCATCGGtaa > 2:638648/1‑139 (MQ=255) aaCCAGGGAGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑GTTTATCCACCTCTGACACAGCATCATCGGtaata > 2:36511/1‑139 (MQ=255) gggAGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑GTTTATCCACCTCTGACACAGcatca < 2:72481/125‑1 (MQ=255) gggAGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑GTTTATCCACCTCTGACACAGcatca > 1:72481/1‑125 (MQ=255) tGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑GTTTATCCATCTCTGACACAGCATCATCGGTAATAATAATGTCAATTTTTTCGa < 1:564027/139‑1 (MQ=255) gCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑GTTTATCCACCTCTGACACAGCATCATCGGTAATAATAATGTCAATTTTTTCGAt < 1:36511/139‑1 (MQ=255) ggATGCGGTGTAAACACCTTATCCGGCATACAGAACAATATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑GTTTATCCACCTCTGACACAGCATCATCGGTAATAATAATGTCAATTTTTTCGATTgg < 2:410628/139‑1 (MQ=255) ttATCCGGCATACAGAACAATATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑GTTTATCCACCTCTGACACAGcatca < 1:77688/89‑1 (MQ=255) ttATCCGGCATACAGAACAATATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑GTTTATCCACCTCTGACACAGcatca > 2:77688/1‑89 (MQ=255) ttATCCGGCATACAGAACAATATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑GTTTATCCACCTCTGACACAGCATCATCGGTAATAATAATGTCAATTTTTTCGa > 2:27787/1‑117 (MQ=255) ttATCCGGCATACAGAACAATATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑GTTTATCCACCTCTGACACAGCATCATCGGTAATAATAATGTCAATTTTTTCGa < 1:27787/117‑1 (MQ=255) ttATCCGGCATACAGAACAATATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑GTTTATCCACCTCTGACACAGCATCATCGGTAATAATAATGTCAATTTTTTCGATTGGTAGTACCTGATTAAAAcc > 2:244394/1‑139 (MQ=255) aTCCGGCATACAGAACAATATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑GTTTATCCACCTCTGACACAGCATCATCGGTAATAATAATGTCAATTTTTTCGATTGGTAGTACCTGATTAAAACcgc > 2:144110/1‑139 (MQ=255) tCCGGCATACAGAACAATATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑GTTTATCCACCTCTGACACAGCATCATCGGTAATAATAATGTCAATTTTTTCGATTGGTAGTACCTGATTAAAACcgcg < 1:239116/139‑1 (MQ=255) aGAACAATATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑GTTTATCCACCTCTGACACAGCATCATCGGTAATAATAATGTCAATTTTTTCGa > 2:342410/1‑104 (MQ=255) aGAACAATATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑GTTTATCCACCTCTGACACAGCATCATCGGTAATAATAATGTCAATTTTTTCGa < 1:342410/104‑1 (MQ=255) aaTATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑GTTTATCCACCTCTGACACAGCATCATCgg > 2:727356/1‑75 (MQ=255) aaTATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑GTTTATCCACCTCTGACACAGCATCATCgg < 1:727356/75‑1 (MQ=255) atatTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑GTTTATCCACCTCTGACACAGCATCATCGGTAATAATAATGTCAATTTTTTCGATTGGTAGTACCTGATTAAAACCGCGACGGTTAAATTTCGAt < 1:366539/139‑1 (MQ=255) | CCGGCAGCGTTGCGTTGTCGATTACCACCAGATTGTCCACTGTTGCGTTAATCAAACTATTCTCTCTTGAACCAGGGAGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATACTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑GTTTATCCACCTCTGACACAGCATCATCGGTAATAATAATGTCAATTTTTTCGATTGGTAGTACCTGATTAAAACCGCGACGGTTAAATTTCGAT > NC_000913/2169561‑2169828 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |