| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,158,776 | Δ1 bp | coding (287/918 nt) | oxyR → | oxidative and nitrosative stress transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,158,775 | 0 | G | . | 97.9% | 196.3 / ‑2.3 | 48 | coding (286/918 nt) | oxyR | oxidative and nitrosative stress transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base G (1/0); new base . (21/26); total (22/26) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.58e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.45e-01 | |||||||||||
GGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGATCAGGCGCGTACCGTGCTGCGTGAGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATTGGTTTGATTCCCACAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCG > NC_000913/4158638‑4158904 | ggACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGATCAGGCGCGTACCGTGCTGCGTGAGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATTgt < 2:692274/139‑2 (MQ=255) ttgttCACCCAGGCGGGAATGCTGCTGGTGGATCAGGCGCGTACCGTGCTGCGTGAGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATT‑GTTTGATTCCCACAGTTgg < 2:519597/139‑1 (MQ=255) ttgttCACCCAGGCGGGAATGCTGCTGGTGGATCAGGCGCGTACCGTGCTGCGTGAGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATT‑GTTTGATTCCCACAGTTgg < 2:20359/139‑1 (MQ=255) ttgttCACCCAGGCGGGAATGCTGCTGGTGGATCAGGCGCGTACCGTGCTGCGTGAGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATT‑GTTTGATTCCCACAGTTgg > 1:20359/1‑139 (MQ=255) ttgttCACCCAGGCGGGAATGCTGCTGGTGGATCAGGCGCGTACCGTGCTGCGTGAGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATT‑GTTTGATTCCCACAGTTgg > 2:760731/1‑139 (MQ=255) tgttCACCCAGGCGGGAATGCTGCTGGTGGATCAGGCGCGTACCGTGCTGCGTGAGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATT‑GTTTGATTCCCACAGTTGGa < 1:760731/139‑1 (MQ=255) gCGGGAATGCTGCTGGTGGATCAGGCGCGTACCGTGCTGCGTGAGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATT‑GTTTGATTCCCACAGTTGGACCGTACCTGCt > 1:302031/1‑139 (MQ=255) cGGGAATGCTGCTGGTGGATCAGGCGCGTACCGTGCTGCGTGAGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATT‑GTTTGATTcc < 1:42880/117‑1 (MQ=255) cGGGAATGCTGCTGGTGGATCAGGCGCGTACCGTGCTGCGTGAGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATT‑GTTTGATTcc > 2:42880/1‑117 (MQ=255) ctgctgGTGGATCAGGCGCGTACCGTGCTGCGTGAGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATT‑GTTTGATTCCCACAGTTGGACCGTACCTGCTACCGCatat < 2:517191/139‑1 (MQ=255) ctgctgGTGGATCAGGCGCGTACCGTGCTGCGTGAGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATT‑GTTTGATTCCCACAGTTGGACCGTACCTGCTACCGCatat < 2:213000/139‑1 (MQ=255) aTCAGGCGCGTACCGTGCTGCGTGAGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATT‑GTTTGATTCCCACAGTTGGACCGTACCTGCTACCGCATATTATCCCTAtg < 2:302031/139‑1 (MQ=255) cgcgTACCGTGCTGCGTGAGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATT‑GTTTGATTCCCACAGTTGGACCGTACCTg < 1:659612/112‑1 (MQ=255) cgcgTACCGTGCTGCGTGAGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATT‑GTTTGATTCCCACAGTTGGACCGTACCTg > 2:659612/1‑112 (MQ=255) cgTACCGTGCTGCGTGAGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATT‑GTTTGATTCCCACAGTTGGACCGTACCTGCTACCGCatat > 1:437652/1‑121 (MQ=255) cgTACCGTGCTGCGTGAGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATT‑GTTTGATTCCCACAGTTGGACCGTACCTGCTACCGCatat < 2:437652/121‑1 (MQ=255) aCCGTGCTGCGTGAGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATT‑GTTTGATTCCCACAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGAc < 1:307803/139‑1 (MQ=255) aCCGTGCTGCGTGAGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATT‑GTTTGATTCCCACAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGAc < 2:876890/139‑1 (MQ=255) tgcGTGAGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATT‑GTTTGATTCCCACAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCa > 2:1083111/1‑139 (MQ=255) gTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATTgttt < 1:1017993/67‑4 (MQ=255) gTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATTGttt > 2:1017993/1‑67 (MQ=255) gTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATT‑GTTTGATTCCCACAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGa < 2:104457/139‑1 (MQ=255) ccTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATT‑GTTTGATTCCCACAGTTGGACCGTAcc < 1:407356/82‑1 (MQ=255) ccTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATT‑GTTTGATTCCCACAGTTGGACCGTAcc > 2:407356/1‑82 (MQ=255) gaTGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATT‑GTTTGATTCCCACAGTTGGACCGTACCTGCTAcc < 1:787341/80‑1 (MQ=255) gaTGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATT‑GTTTGATTCCCACAGTTGGACCGTACCTGCTAcc > 2:787341/1‑80 (MQ=255) gaTGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATT‑GTTTGATTCCCACAGTTGGACCGTACCTGCTACCGCat > 2:161836/1‑84 (MQ=255) gaTGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATT‑GTTTGATTCCCACAGTTGGACCGTACCTGCTACCGCat < 1:161836/84‑1 (MQ=255) aTGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATT‑GTTTGATTCCca < 1:34793/57‑1 (MQ=255) aTGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATT‑GTTTGATTCCca > 2:34793/1‑57 (MQ=255) aTGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATT‑GTTTGATTCCCACAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGc > 2:463870/1‑139 (MQ=255) aTGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATT‑GTTTGATTCCCACAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGc < 1:463870/139‑1 (MQ=255) tGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATT‑GTTTGATTCCCACAGTTGGACCGTACCTGCTACCGCatat > 2:971294/1‑84 (MQ=255) tGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATT‑GTTTGATTCCCACAGTTGGACCGTACCTGCTACCGCatat < 1:971294/84‑1 (MQ=255) ggCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATT‑GTTTGATTcc < 2:692327/53‑1 (MQ=255) ggCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATT‑GTTTGATTcc > 1:692327/1‑53 (MQ=255) aGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATT‑GTTTGATTCCCACAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGAc < 2:427097/139‑1 (MQ=255) agcagGGCGAGACGATGTCCGGACCGCTGCACATT‑GTTTGATTCCca > 1:1026218/1‑47 (MQ=255) agcagGGCGAGACGATGTCCGGACCGCTGCACATT‑GTTTGATTCCca < 2:1026218/47‑1 (MQ=255) gggCGAGACGATGTCCGGACCGCTGCACATT‑GTTTGATTCCCACAGTTGGACCGTACCTGCTACCGCatat < 2:595774/71‑1 (MQ=255) gggCGAGACGATGTCCGGACCGCTGCACATT‑GTTTGATTCCCACAGTTGGACCGTACCTGCTACCGCatat > 1:595774/1‑71 (MQ=255) tGTCCGGACCGCTGCACATT‑GTTTGATTCCCACAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGAcc > 1:694212/1‑121 (MQ=255) tGTCCGGACCGCTGCACATT‑GTTTGATTCCCACAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGAcc < 2:694212/121‑1 (MQ=255) aCCGCTGCACATT‑GTTTGATTCCCACAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGaa > 2:53844/1‑90 (MQ=255) aCCGCTGCACATT‑GTTTGATTCCCACAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGaa < 1:53844/90‑1 (MQ=255) gCTGCACATT‑GTTTGATTCCCACAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCg > 1:161304/1‑139 (MQ=255) tGCACATT‑GTTTGATTCCCACAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACCCACCAGTTACTgg > 1:1038613/1‑122 (MQ=255) tGCACATT‑GTTTGATTCCCACAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACCCACCAGTTACTgg < 2:1038613/122‑1 (MQ=255) cacaTT‑GTTTGATTCCCACAGTTGGACCGTACCTGCTACCg > 1:85840/1‑41 (MQ=255) cacaTT‑GTTTGATTCCCACAGTTGGACCGTACCTGCTACCg < 2:85840/41‑1 (MQ=255) | GGACCAGCCGTAAAGTGTTGTTCACCCAGGCGGGAATGCTGCTGGTGGATCAGGCGCGTACCGTGCTGCGTGAGGTGAAAGTCCTTAAAGAGATGGCAAGCCAGCAGGGCGAGACGATGTCCGGACCGCTGCACATTGGTTTGATTCCCACAGTTGGACCGTACCTGCTACCGCATATTATCCCTATGCTGCACCAGACCTTTCCAAAGCTGGAAATGTATCTGCATGAAGCACAGACCCACCAGTTACTGGCGCAACTGGACAGCG > NC_000913/4158638‑4158904 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |