| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1323147 | 35 (0.550) | 13 (0.200) | 8/202 | 4.8 | 42.6% | intergenic (‑65/‑73) | trpL/yciV | trp operon leader peptide/PHP domain protein |
| ? | NC_000913 | = 3742633 | 0 (0.000) | intergenic (‑101/‑100) | yiaJ/yiaK | transcriptional repressor for the yiaKLMNO‑lyxK‑sgbHUE operon/2,3‑diketo‑L‑gulonate reductase, NADH‑dependent | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
GTTCGATGATTAATTGTCAACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1323125‑1323147‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATTGATGAATTTCAAAAGACATAAAAATCAATTGGTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGCTACCATCAGGACGCGACAAAATGGGGAAAGAAGTGATGGGAAAAAAAGAGAACG < NC_000913/3742633‑3742499 tgcCGATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGCTACCATCAGGACGCGACAAAATGGGGAAAGAAGTGA > 2:1505439/4‑139tgcCGATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGCTACCATCAGGA > 1:933619/4‑114tgcCGATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGCTACCATCAGGA < 2:933619/111‑1 cCGATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAAGTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGC > 1:907325/2‑101 cCGATCATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGC < 2:907325/100‑1 ATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGCTACCATCAGGACGCGACAAAATGGGGAAAGAAGTGATGGGA > 2:1084011/1‑139 ATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCA > 1:1662784/1‑88 ATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCA < 2:1662784/88‑1 ATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAA > 1:778600/1‑50 ATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAA < 2:778600/50‑1 CAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGCTACCATCAGGACGCGACAAAAT < 1:625968/108‑1 CAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGCTACCATCAGGACGCGACAAAAT > 2:625968/1‑108 AACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGCTACCATCAGGACGCGACAAAATGGGGAAAGAAGTGATGGGAAAAAAAGAGAACG > 2:451610/1‑139 GTTCGATGATTAATTGTCAACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1323125‑1323147‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATTGATGAATTTCAAAAGACATAAAAATCAATTGGTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGCTACCATCAGGACGCGACAAAATGGGGAAAGAAGTGATGGGAAAAAAAGAGAACG < NC_000913/3742633‑3742499 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |