| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,600,609 | (C)5→6 | coding (132/471 nt) | bcp → | peroxiredoxin, thiol peroxidase, thioredoxin‑dependent |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,600,604 | 1 | . | C | 91.2% | 109.3 / 3.1 | 34 | coding (127/471 nt) | bcp | peroxiredoxin, thiol peroxidase, thioredoxin‑dependent |
| Reads supporting (aligned to +/- strand): ref base . (1/2); new base C (12/19); total (13/21) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TTAAGTAATGAATCCACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑A‑CCCCC‑GGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGCTGGGTATCAGCACCGATAAACCCGAAAAACTCTCCCGTTTTGCGGAAAAAG > NC_000913/2600471‑2600730 | ttAAGTAATGAATCCACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑A‑ccccc < 2:121875/139‑1 (MQ=255)ttAAGTAATGAATCCACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑A‑ccccc < 2:715018/139‑1 (MQ=255) aGTAATGAATCCACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑A‑ccccccgg > 2:431949/1‑136 (MQ=255) tAATGAATCCACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑A‑ccccccggct < 2:482533/139‑6 (MQ=255) aTGAATCCACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑ACCCCCC‑GGCTGt > 1:755136/1‑139 (MQ=255) tGAATCCACTGAAAGCCGGTGATATCGCACCGACATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGTGACAGCGTGTTCTGGTTTATTTCTCCCCTAAATCCATG‑A‑CCCCCAGGCTGTa < 1:186380/139‑1 (MQ=255) tGAATCCACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑ACCCCCC‑GGCTGTa < 2:133641/139‑1 (MQ=255) tGAATCCACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑ACCCCCC‑GGCTGTa < 2:193960/139‑1 (MQ=255) tGAATCCACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑ACCCCCC‑GGCTGTa < 2:471149/139‑1 (MQ=255) tGAATCCACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑ACCCCCC‑GGCTGTa > 1:471149/1‑139 (MQ=255) tGAATCCACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑ACCCCCC‑GGCTGTa < 1:431949/139‑1 (MQ=255) tGAATCCACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑ACCCCCC‑GGCTGTa < 1:200511/139‑1 (MQ=255) tCCACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑ACCCCCC‑GGCTGTa < 1:453416/135‑1 (MQ=255) tCCACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑ACCCCCC‑GGCTGTa > 2:453416/1‑135 (MQ=255) tCCACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑ACCCCCC‑GGCTGTACCGt > 2:461137/1‑139 (MQ=255) ccACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑ACCCCCC‑GGCTGTACCGTa < 1:189767/139‑1 (MQ=255) cACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑ACCCCCC‑GGCTGTACCGTAc > 2:600616/1‑139 (MQ=255) cGGTGATATCGCAACGAAATTTAGCTTGCCGGATCAAGACGAAGAACAAGCTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAATGCCATG‑A‑CCCCCATCCTGTACCGTACAGGCCTGCgt > 1:740194/1‑138 (MQ=255) gTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑ACCCCCC‑GGCTGTACCGTACAGGCCTGCGGCt < 2:755136/139‑1 (MQ=255) aCCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑ACCCCCC‑GGCTGTACCGTACAGGCCTGCGGCTTACGCGATaa < 1:600616/139‑1 (MQ=255) ccGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑ACCCCCC‑GGCTGTACCGTACAGGCCTGCGGCTTACGCGATAAc > 2:584573/1‑139 (MQ=255) tttAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑ACCCCCC‑GGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGAt < 2:467425/139‑1 (MQ=255) ccGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑ACCCCCC‑GGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGaaa < 2:182884/139‑1 (MQ=255) aCGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑ACCCCCC‑GGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCg > 2:328972/1‑139 (MQ=255) aaGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑ACCCCCC‑GGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGc < 1:486874/139‑1 (MQ=255) ccGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑ACCCCCC‑GGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGCTGGGTATCAGCa < 2:244883/139‑1 (MQ=255) cGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑ACCCCCC‑GGCTGTa > 2:130123/1‑63 (MQ=255) cGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑ACCCCCC‑GGCTGTa < 1:130123/63‑1 (MQ=255) ttCCAGGGACAGTGAGTTCAGCATTATTTCTACCCGAAAGCCATGTC‑CCCCC‑GGCTGTTCCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGCTGGGTATCAGCACCGAt < 1:681866/139‑1 (MQ=255) cAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑ACCCCCC‑GGCTg > 2:300785/1‑48 (MQ=255) cAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑ACCCCCC‑GGCTg < 1:300785/48‑1 (MQ=255) cGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑ACCCCCC‑GGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGCTg < 2:362615/112‑1 (MQ=255) cGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑ACCCCCC‑GGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGCTg > 1:362615/1‑112 (MQ=255) tttCTACCCGAAAGCTATG‑ACCCCCC‑GGCTGTACCGTACAGGCCTGCGGCTTAcgcg > 1:536901/1‑57 (MQ=255) tttCTACCCGAAAGCCATG‑ACCCCCC‑GCCTGTACCGTACAGGCCTGCGGCTTAcgcg < 2:536901/57‑1 (MQ=255) cGAAAGCCATG‑ACCCCCC‑GGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGCTGGGTATCAGCACCGATAAACCCGAAAAACTCTCCCGTTTTGCGGAAAAag < 2:460192/139‑1 (MQ=255) aaaGCCATG‑ACCCCCC‑GGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGAtgtg < 1:236539/85‑1 (MQ=255) aaaGCCATG‑ACCCCCC‑GGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGAtgtg > 2:236539/1‑85 (MQ=255) | TTAAGTAATGAATCCACTGAAAGCCGGTGATATCGCACCGAAATTTAGCTTGCCGGATCAAGACGGAGAACAAGTTAATTTGACCGACTTCCAGGGACAGCGTGTTCTGGTTTATTTCTACCCGAAAGCCATG‑A‑CCCCC‑GGCTGTACCGTACAGGCCTGCGGCTTACGCGATAACATGGATGAGTTGAAAAAAGCGGGCGTTGATGTGCTGGGTATCAGCACCGATAAACCCGAAAAACTCTCCCGTTTTGCGGAAAAAG > NC_000913/2600471‑2600730 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |