| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1323147 | 66 (0.860) | 35 (0.460) | 15/216 | 3.4 | 51.1% | intergenic (‑65/‑73) | trpL/yciV | trp operon leader peptide/PHP domain protein |
| ? | NC_000913 | = 3742633 | 1 (0.010) | intergenic (‑101/‑100) | yiaJ/yiaK | transcriptional repressor for the yiaKLMNO‑lyxK‑sgbHUE operon/2,3‑diketo‑L‑gulonate reductase, NADH‑dependent | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
AGTTCGATGATTAATTGTCAACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1323124‑1323147‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATTGATGAATTTCAAAAGACATAAAAATCAATTGGTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGCTACCATCAGGACGCGACAAAATGGGGAAAGAAGTGATGGGAAAAAAAGAGAACGAGA < NC_000913/3742633‑3742496 atgcCGATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGCTACCATCAGGACGCGACAAAATGGGGAAAGAAGTG > 2:155878/5‑139 tgcCGATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATTGtta > 2:913940/4‑58 tgcCGATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATTGtta < 1:913940/58‑4 tgcCGATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGCTACCATCAGGACGCGACAAAATGGGGAAAGAAGTGA > 1:154625/4‑139 tgcCGATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGCTACCATCAGGACGCGACAAAATGGGGAAAGAAGTGA > 2:320561/4‑139 tgcCGATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGCTACCATCAGGACGCGACAAAATGGGGAAAGAAGTGA > 2:1348661/4‑139 tgcCGATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGCTACCATCAGGACGCGACAAAATGGGGAAAGAAGTGA > 2:1269674/4‑139 tgcCGATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCAC > 2:435683/4‑94 tgcCGATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCAC < 1:435683/91‑1 tgcCGATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCG > 1:1153912/4‑75 tgcCGATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCG < 2:1153912/72‑1 tgcCGATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTAT < 2:323718/66‑1 tgcCGATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTAT > 1:323718/4‑69 gcCGATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGCTACCATCAGGACGCGACAAAATGGGGAAAGAAGTGAT < 1:155878/137‑1 gcCGATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATA > 1:1168287/3‑46 gcCGATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATA < 2:1168287/44‑1 ATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACAC < 1:640186/91‑1 ATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACAC > 2:640186/1‑91 ATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACAC < 2:1726950/91‑1 ATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACAC > 1:1726950/1‑91 ATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAA > 1:429112/1‑50 ATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAA < 2:429112/50‑1 ATGATTAATTGTCAACAGGATTGATGAATTTCAAA < 1:718135/35‑1 ATGATTAATTGTCAACAGGATTGATGAATTTCAAA > 2:718135/1‑35 GATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGCTACCATCAGGACGCGACAAAATGGGGAAAGAAGTGATGGGAAA > 2:993630/1‑139 TAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGCTACCATCA < 2:707918/101‑1 TAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGCTACCATCA > 1:707918/1‑101 ATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGCTACCATCAGGACGCGACAAAATGGGGAAAGAAGTGATGGGAAAAAAAG > 1:941714/1‑139 CAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGCTACCATCAGGACGCGACAAAATGGGGAAAGAAGTGATGGGAAAAAAAGAGAAC > 1:1343172/1‑139 AACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGC < 1:1464761/85‑1 AACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGC > 2:1464761/1‑85 AACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCG > 1:2851/1‑84 AACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCG < 2:2851/84‑1 AGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGCTACCATCAGGACGCGACAAAATGGGGAAAGAAGTGATGGGAAAAAAAGAGAACGAGA < 2:1648259/139‑1 AGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGCTACCATCAGGACGCGACAAAATGGGGAAAGAAGTGATGGGAAAAAAAGAGAACGAGA < 2:941714/139‑1 AGTTCGATGATTAATTGTCAACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1323124‑1323147‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATTGATGAATTTCAAAAGACATAAAAATCAATTGGTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGCTACCATCAGGACGCGACAAAATGGGGAAAGAAGTGATGGGAAAAAAAGAGAACGAGA < NC_000913/3742633‑3742496 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |