Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913566,1730CG47.7% 15.5 / 248.7 130pseudogene (204/279 nt)exoDpseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related
Reads supporting (aligned to +/- strand):  ref base C (33/34);  new base G (31/30);  total (65/65)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.76e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 131 total aligned reads displayed.

GAAGCGCCGCAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTAC  >  NC_000913/566037‑566302
                                                                                                                                         |                                                                                                                                 
gAAGCGCCGCAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCAt                                                                                                                                 <  1:323990/139‑1 (MQ=255)
           aTGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAAc                                                                                                                      <  2:31289/139‑1 (MQ=255)
                ggCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGcc                                                                                                                 <  2:574248/139‑1 (MQ=255)
                   ttGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATg                                                                                                              >  2:1353418/1‑139 (MQ=255)
                    tGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGt                                                                                                             <  1:1391550/139‑1 (MQ=255)
                    tGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGt                                                                                                             <  1:1656157/139‑1 (MQ=255)
                           ttgtGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTc                                                                                                      >  2:631267/1‑139 (MQ=255)
                               cgcctACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTTCAtc                                                                                                   <  2:257691/135‑2 (MQ=255)
                                 cctACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTTCATCCCg                                                                                                >  1:1276750/3‑139 (MQ=255)
                                   tACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGcc                                                                                                                 <  2:1696661/120‑1 (MQ=255)
                                      ccGGATATTATCGTGAGGATGCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAAc                                                                                                                      >  2:904880/1‑112 (MQ=255)
                                      ccGGATATTATCGTGAGGATGCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAAc                                                                                                                      <  1:904880/112‑1 (MQ=255)
                                       cGGATATTATCGTGAGGATGCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTTCATCCCGCTCAAt                                                                                          <  2:1017555/139‑1 (MQ=255)
                                         gATATTATCGTGAGGATGCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCa                                                                                        <  2:1430254/139‑1 (MQ=255)
                                         gATATTATCGTGAGGATGCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCa                                                                                        <  1:172308/139‑1 (MQ=255)
                                             ttatCGTGAGGATGCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACt                                                                                                                     <  2:914567/106‑1 (MQ=255)
                                              tatCGTGAGGATGCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTTCATCCCGCTCAATCa                                                                                        >  1:1696291/1‑134 (MQ=255)
                                              tatCGTGAGGATGCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTTCATCCCGCTCAATCACGACa                                                                                   >  1:617952/1‑139 (MQ=255)
                                                   tGAGGATGCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATAATg                                                                              <  2:1492792/139‑1 (MQ=255)
                                                   tGAGGATGCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATAATg                                                                              >  2:852402/1‑139 (MQ=255)
                                                    gAGGATGCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCg                                                                                                                   >  1:711340/1‑101 (MQ=255)
                                                    gAGGATGCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTTCATCCCGCTCAATCACGACATAATGc                                                                             >  2:1094668/1‑139 (MQ=255)
                                                    gAGGATGCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCt                                                                                              >  2:1397763/1‑122 (MQ=255)
                                                    gAGGATGCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATAATGc                                                                             >  2:497059/1‑139 (MQ=255)
                                                    gAGGATGCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATAATGc                                                                             >  1:397298/1‑139 (MQ=255)
                                                     aGGATGCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGc                                                                                               <  1:1085586/120‑1 (MQ=255)
                                                     aGGATGCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCACGTACTTTTCATTCCGc                                                                                               >  2:1085586/1‑120 (MQ=255)
                                                       gATGCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTTCATCCCGCTCAATCa                                                                                        >  2:696680/1‑125 (MQ=255)
                                                       gATGCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTTCATCCCGCTCAATCa                                                                                        <  2:804121/125‑1 (MQ=255)
                                                       gATGCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTTCATCCCGCTCAATCa                                                                                        >  1:804121/1‑125 (MQ=255)
                                                        aTGCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCAt                                                                                                               >  1:1579801/1‑101 (MQ=255)
                                                        aTGCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCAt                                                                                                               <  2:1579801/101‑1 (MQ=255)
                                                         tGCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCACCATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGcc                                                                        >  2:1274518/1‑139 (MQ=255)
                                                          gCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCt                                                                       >  1:1763449/1‑139 (MQ=255)
                                                           cGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCtt                                                                      <  2:617952/139‑1 (MQ=255)
                                                           cGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCtt                                                                      >  1:897525/1‑139 (MQ=255)
                                                           cGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCA‑‑TTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCa                                                                    <  2:1116119/139‑1 (MQ=255)
                                                            gTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGt                                                                                                             >  2:710212/1‑99 (MQ=255)
                                                            gTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGt                                                                                                             <  1:710212/99‑1 (MQ=255)
                                                             tCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGt                                                                                                             <  1:1394253/98‑1 (MQ=255)
                                                              cATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGt                                                                                                             <  2:797238/97‑1 (MQ=255)
                                                              cATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGt                                                                                                             >  1:797238/1‑97 (MQ=255)
                                                                 cGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCt                                                                <  2:721425/139‑1 (MQ=255)
                                                                   ccATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTc                                                              <  1:972483/139‑1 (MQ=255)
                                                                     aTTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCAt                                                            >  1:1709524/1‑139 (MQ=255)
                                                                       tGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATgc                                                          <  2:897525/139‑1 (MQ=255)
                                                                        gCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTTCATCCCGCTCAATCACAACATAATGCAGGCCTTCACGCTTCAtacg                                                         <  1:31509/139‑4 (MQ=255)
                                                                             cccAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGcc                                                                                                                 >  2:416192/1‑79 (MQ=255)
                                                                             cccAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTTCa                                                                                                     <  2:1349314/91‑1 (MQ=255)
                                                                             cccAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTTCa                                                                                                     >  1:1349314/1‑91 (MQ=255)
                                                                               cAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCa                                                                    >  2:718508/1‑122 (MQ=255)
                                                                               cAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCa                                                                    <  1:718508/122‑1 (MQ=255)
                                                                               cAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCAc                                                                   <  1:1432361/123‑1 (MQ=255)
                                                                               cAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCAc                                                                   >  2:1432361/1‑123 (MQ=255)
                                                                               cAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTc                                                   >  2:1316278/1‑139 (MQ=255)
                                                                                 aaTACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCAt                                                 <  1:1471701/139‑1 (MQ=255)
                                                                                  aTACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATa                                                <  1:895134/139‑1 (MQ=255)
                                                                                  aTACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACa                                                                                   <  1:1538363/104‑1 (MQ=255)
                                                                                    aCAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGt                                              >  1:825650/1‑139 (MQ=255)
                                                                                    aCAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGt                                              <  1:481621/139‑1 (MQ=255)
                                                                                      aaaaCCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTTCATCCCGCTCAATCACGACa                                                                                   <  1:1679411/100‑1 (MQ=255)
                                                                                      aaaaCCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTTCATCCCGCTCAATCACGACa                                                                                   >  2:1679411/1‑100 (MQ=255)
                                                                                       aaaCCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTgg                                           >  2:1362919/1‑139 (MQ=255)
                                                                                        aaCCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCa                                                                    >  1:431376/1‑113 (MQ=255)
                                                                                         aCCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCACCATGTACTTTTCATTCCGCTCAATCACGTCATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCa                                         <  1:1274518/139‑1 (MQ=255)
                                                                                            aaTTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAg                                      >  1:683127/1‑139 (MQ=255)
                                                                                              tttCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACt                                                                                                                     <  2:541367/58‑1 (MQ=255)
                                                                                              tttCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACt                                                                                                                     >  1:541367/1‑58 (MQ=255)
                                                                                                    ccAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATa                                                <  1:22099/121‑1 (MQ=255)
                                                                                                    ccAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGt                                                                                                             >  2:299962/1‑60 (MQ=255)
                                                                                                     cAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGcc                                                                                                                 >  1:1229697/1‑55 (MQ=255)
                                                                                                     cAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGcc                                                                                                                 <  2:1229697/55‑1 (MQ=255)
                                                                                                        tGCCTCGTCCATTTTTTCGATGAACTCCGGCACTATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCt                          >  1:585962/1‑139 (MQ=255)
                                                                                                        tGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGt                                                                                                             <  1:1751249/56‑1 (MQ=255)
                                                                                                        tGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGt                                                                                                             >  2:1751249/1‑56 (MQ=255)
                                                                                                        tGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCtt                                                                      >  2:834454/1‑95 (MQ=255)
                                                                                                        tGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGt                                                                                                             <  2:667771/56‑1 (MQ=255)
                                                                                                        tGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGt                                                                                                             >  1:667771/1‑56 (MQ=255)
                                                                                                        tGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGt                                                                                                             >  2:1259916/1‑56 (MQ=255)
                                                                                                        tGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATAATGTAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCt                          >  2:1509290/1‑139 (MQ=255)
                                                                                                        tGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCt                          >  1:688051/1‑139 (MQ=255)
                                                                                                         gCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTTCATCCCGCTCAATCACGACATAATGTAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCAtttt                         >  2:1714647/1‑139 (MQ=255)
                                                                                                          ccTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCGTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCttt                        <  2:1095076/139‑1 (MQ=255)
                                                                                                             cGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATg                                                                                                              >  1:1474799/1‑50 (MQ=255)
                                                                                                             cGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATg                                                                                                              <  2:1474799/50‑1 (MQ=255)
                                                                                                              gTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGcc                                                                                                                 >  2:356601/1‑46 (MQ=255)
                                                                                                              gTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGcc                                                                                                                 <  1:356601/46‑1 (MQ=255)
                                                                                                              gTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTcgc                    >  1:1026159/1‑139 (MQ=255)
                                                                                                                ccATTTTTTCGATGAACTCCGGCACTATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGt                  <  2:585962/139‑1 (MQ=255)
                                                                                                                ccATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGt                  <  1:1362919/139‑1 (MQ=255)
                                                                                                                   ttttttCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTTCATCCCGCTCAATCACGACATATTGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCAc               <  1:801895/139‑1 (MQ=255)
                                                                                                                   ttttttCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCAc               >  2:1582159/1‑139 (MQ=255)
                                                                                                                     ttttCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATAATGTAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCAccc             <  1:1509290/139‑1 (MQ=255)
                                                                                                                     ttttCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCAccc             <  2:1763449/139‑1 (MQ=255)
                                                                                                                       ttCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCcac           <  1:1213534/139‑1 (MQ=255)
                                                                                                                       ttCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCACCcac           <  1:497059/139‑1 (MQ=255)
                                                                                                                           aTGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATg        <  2:540736/138‑1 (MQ=255)
                                                                                                                              aaCTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGt    >  1:1669670/1‑139 (MQ=255)
                                                                                                                                cTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTTCATCCCGCTCAATCACGACATAATGTAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTAc  <  1:1714647/139‑1 (MQ=255)
                                                                                                                                cTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTAc  <  2:397298/139‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                 
GAAGCGCCGCAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCT‑CCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTAC  >  NC_000913/566037‑566302

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑