Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,500,043	C→T	pseudogene (492/942 nt)	yjgX ←	pseudogene fragment

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,500,043	0	C	T	100.0%	268.3 / NA	83	pseudogene (492/942 nt)	yjgX	pseudogene fragment
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (42/41);  total (42/41)

GCATGGCGAAATGACGTGAGTACCGGCGAAGGATACCATCAAGCTGGCCAAGAAAGTTATCCAGTTTACTGATGCTGG‑CGAGGTAACAGGCAATTTTTCGGGGATACTGCTCCAGGTAATTATTCGGCTAGGAGTTAAGGCTGTCACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCTTCGGAGAGGATGTATCCGCCAGCGCACGTTCTGTTTCCTGTAACAACAGTTTGTCATCTGTTTTACGGGAAGCG  >  NC_000913/4499916‑4500178                                                                                                                                 |                                                                                                                                        gCATGGCGAAATGACGTGAGTACCGGCGAAGGATACCATCAAGCTGGCCAAGAAAGTTATCCAGTTTACTGATGCTGG‑CGAGGTAACAGGCAATTTTTCGGGGATACTGCTCCAGGTAATTATTCGGTTAGGAGTTAAg                                                                                                                              >  2:1324965/1‑139 (MQ=255)  cATGGCGAAATGACGTGAGTACCGGCGAAGGATACCATCAAGCTGGCCAAGAAAGTTATCCAGTTTACTGATGCTGG‑CGAGGTAACAGGCAATTTTTCGGGGATACTGCTCCAGGTAATTATTCGGTTAGGAGTTAAgg                                                                                                                             >  2:999793/1‑139 (MQ=255)  cATGGCGAAATGACGTGAGTACCGGCGAAGGATACCATCAAGCTGGCCAAGAAAGTTATCCAGTTTACTGATGCTGG‑CGAGGTAACAGGCAATTTTTCGGGGATACTGCTCCAGGTAATTATTCGGTTAGGAGTTAAgg                                                                                                                             >  2:1052170/1‑139 (MQ=255)    tGGCGAAATGACGTGAGTACCGGCGAAGGATACCATCAAGCTGGCCAAGAAAGTTATCCAGTTTACTGATGCTGG‑CGAGGTAACAGGCAATTTTTCGGGGATACTGCTCCAGGTAATTATTCGGTTAGGAGTTAAGGCt                                                                                                                           >  1:708164/1‑139 (MQ=255)     ggCGAAATGACGTGAGTACCGGCGAAGGATACCATCAAGCTGGCCAAGAAAGTTATCCAGTTTACTGATGCTGG‑CGAGGTAACAGGCAATTTTTCGGGGATACTGCTCCAGGTAATTATTCGGTTAGGAGTTAAGGCTg                                                                                                                          <  2:708164/139‑1 (MQ=255)          aaTGACGTGAGTACCGGCGAAGGATACCATCAAGCTGGCCAAGAAAGTTATCCAGTTTACTGATGCTGG‑CGAGGTAACAGGCAATTTTTCGGGGATACTGCTCCAGGTAATTATTCGGTTAGGAGTTAAGGCTGTtaca                                                                                                                     <  2:923561/139‑1 (MQ=255)          aaTGACGTGAGTACCGGCGAAGGATACCATCAAGCTGGCCAAGAAAGTTATCCAGTTTACTGATGCTGG‑CGAGGTAACAGGCAATTTTTCGGGGATACTGCTCCAGGTAATTATTCGGTTAGGAGTTAAGGCTGTtaca                                                                                                                     <  2:255281/139‑1 (MQ=255)                      aCCGGCGAAGGATACCATCAAGCTGGCCAAGAAAGTTATCCAGTTTACTGATGCTGG‑CGAGGTAACAGGCAATTTTTCGGGGATACTGCTCCAGGTAATTATTCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGATg                                                                                                         <  1:1324965/139‑1 (MQ=255)                      aCCGGCGAAGGATACCATCAAGCTGGCCAAGAAAGTTATCCAGTTTACTGATGCTGG‑CGAGGTAACAGGCAATTTTTCGGGGATACTGCTCCAGGTAATTATTCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGATg                                                                                                         <  2:1565665/139‑1 (MQ=255)                      aCCGGCGAAGGATACCATCAAGCTGGACAAGAAAGTTATCCATTTACCTGGTGCTGGTCGTGG‑AACGGGTAATATGTCGAGGATACTGCGCCAGGTAATTATTCGGTAAGGGGTTGAGGTTGTTACGCGGATTTGGAtc                                                                                                         <  1:1534787/139‑2 (MQ=255)                        cGGCGAAGGATACCATCAAGCTGGCCAAGAAAGTTATCCAGTTTACTGATGCTGG‑CGAGGTAACAGGCAATTTTTCGGGGATACTGCTCCAGGTAATTATTCGGTTa                                                                                                                                       <  2:804533/107‑1 (MQ=255)                        cGGCGAAGGATACCATCAAGCTGGCCAAGAAAGTTATCCAGTTTACTGATGCTGG‑CGAGGTAACAGGCAATTTTTCGGGGATACTGCTCCAGGTAATTATTCGGTTa                                                                                                                                       >  1:804533/1‑107 (MQ=255)                        cGGCGAAGGATACCATCAAGCTGGCCAAGAAAGTTATCCAGTTTACTGATGCTGG‑CGAGGTAACAGGCAATTTTTCGGGGATACTGCTCCAGGTAATTATTCGGTTAGGAGTTAAGGCTGTtaca                                                                                                                     <  2:191825/125‑1 (MQ=255)                        cGGCGAAGGATACCATCAAGCTGGCCAAGAAAGTTATCCAGTTTACTGATGCTGG‑CGAGGTAACAGGCAATTTTTCGGGGATACTGCTCCAGGTAATTATTCGGTTAGGAGTTAAGGCTGTtaca                                                                                                                     >  1:191825/1‑125 (MQ=255)                        cGGCGAAGGATACCATCAAGCTGGCCAAGAAAGTTATCCAGTTTACTGATGCTGG‑CGAGGTAACAGGCAATTTTTCGGGGATACTGCTCCAGGTAATTATTCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGATgag                                                                                                       <  2:1743703/139‑1 (MQ=255)                           cGAAGGATACCATCAAGCTGGCCAAGAAAGTTATCCAGTTTACTGATGCTGG‑CGAGGTAACAGGCAATTTTTCGGGGATACTGCTCCAGGTAATTATTCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGATGAGAAc                                                                                                    <  2:541761/139‑1 (MQ=255)                             aaGGATACCATCAAGCTGGCCAAGAAAGTTATCCAGTTTACTGATGCTGG‑CGAGGTAACAGGCAATTTTTCGGGGATACTGCTCCAGGTAATTATTCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGATGAGAAccc                                                                                                  >  1:601977/1‑139 (MQ=255)                               ggATACCATCAAGCTGGCCAAGAAAGTTATCCAGTTTACTGATGCTGG‑CGAGGTAACAGGCAATTTTTCGGGGATACTGCTCCAGGTAATTATTCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGATgag                                                                                                       <  1:1217524/132‑1 (MQ=255)                               ggATACCATCAAGCTGGCCAAGAAAGTTATCCAGTTTACTGATGCTGG‑CGAGGTAACAGGCAATTTTTCGGGGATACTGCTCCAGGTAATTATTCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGATgag                                                                                                       >  2:1217524/1‑132 (MQ=255)                                     cATCAAGCTGGCCAAGAAAGTTATCCAGTTTACTGATGCTGG‑CGAGGTAACAGGCAATTTTTCGGGGATACTGCTCCAGGTAATTATTCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGATGAGAACCCATCAtgtg                                                                                          <  1:987078/139‑1 (MQ=255)                                     cATCAAGCTGGCCAAGAAAGTTATCCAGTTTACTGATGCTGG‑CGAGGTAACAGGCAATTTTTCGGGGATACTGCTCCAGGTAATTATTCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGATGAGAACCCATCAtgtg                                                                                          <  1:1350493/139‑1 (MQ=255)                                     cATCAAGCTGGCCAAGAAAGTTATCCAGTTTACTGATGCTGG‑CGAGGTAACAGGCAATTTTTCGGGGATACTGCTCCAGGTAATTATTCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGATGAGAACCCATCAtgtg                                                                                          <  1:426164/139‑1 (MQ=255)                                       tCAAGCTGGCCAAGAAAGTTATCCAGTTTACTGATGCTGG‑CGAGGTAACAGGCAATTTTTCGGGGATACTGCTCCAGGTAATTATTCGGTTAGGAGTTaa                                                                                                                               <  1:324772/100‑1 (MQ=255)                                       tCAAGCTGGCCAAGAAAGTTATCCAGTTTACTGATGCTGG‑CGAGGTAACAGGCAATTTTTCGGGGATACTGCTCCAGGTAATTATTCGGTTAGGAGTTaa                                                                                                                               >  2:324772/1‑100 (MQ=255)                                          aGCTGGCCAAGAAAGTTATCCAGTTTACTGATGCTGG‑CGAGGTAACAGGCAATTTTTCGGGGATACTGCTCCAGGTAATTATTCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGATGAGAACCCATCATGTGCAGGa                                                                                     >  1:1744846/1‑139 (MQ=255)                                               gCCAAGAAAGTTATCCAGTTTACTGATGCTGG‑CGAGGTAACAGGCAATTTTTCGGGGATACTGCTCCAGGTAATTATTCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGAt                                                                                                          >  1:1434684/1‑113 (MQ=255)                                               gCCAAGAAAGTTATCCAGTTTACTGATGCTGG‑CGAGGTAACAGGCAATTTTTCGGGGATACTGCTCCAGGTAATTATTCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGAt                                                                                                          <  2:1434684/113‑1 (MQ=255)                                               gCCAAGAAAGTTATCCAGTTTACTGATGCTGG‑CGAGGTAACAGGCAATTTTTCGGGGATACTGCTCCAGGTAATTATTCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAAtt                                                                                >  2:1769382/1‑139 (MQ=255)                                               gCCAAGAAAGTTATCCAGTTTACTGATGCTGG‑CGAGGTAACAGGCAATTTTTCGGGGATACTGCTCCAGGTAATTATTCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAAtt                                                                                >  2:48672/1‑139 (MQ=255)                                                        gTTATCCAGTTTACTGATGCTGG‑CGAGGTAACAGGCAATTTTTCGGGGATACTGCTCCAGGTAATTATTCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCTTCGga                                                                       <  2:601977/139‑1 (MQ=255)                                                         ttATCCAGTTTACTGATGCTGG‑CGAGGTAACAGGCAATTTTTCGGGGATACTGCTCCAGGTAATTATTCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCTTCGgag                                                                      <  1:1692088/139‑1 (MQ=255)                                                         ttATCCAGTTTACTGATGCTGG‑CGAGGTAACAGGCAATTTTTCGGGGATACTGCTCCAGGTAATTATTCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCTTCGgag                                                                      >  1:1242302/1‑139 (MQ=255)                                                                      tGATGCTGG‑CGAGGTAACAGGCAATTTTTCGGGGATACTGCTCCAGGTAATTATTCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGAt                                                                                                          <  2:1372682/90‑1 (MQ=255)                                                                      tGATGCTGG‑CGAGGTAACAGGCAATTTTTCGGGGATACTGCTCCAGGTAATTATTCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGAt                                                                                                          >  1:1372682/1‑90 (MQ=255)                                                                      tGATGCTGG‑CGAGGTAACAGGCAATTTTTCGGGGATACTGCTCCAGGTAATTATTCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCTTCGGAGAgg                                                                   <  1:423802/129‑1 (MQ=255)                                                                      tGATGCTGG‑CGAGGTAACAGGCAATTTTTCGGGGATACTGCTCCAGGTAATTATTCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCTTCGGAGAgg                                                                   >  2:423802/1‑129 (MQ=255)                                                                       gATGCTGG‑CGAGGTAACAGGCAATTTTTCGGGGATACTGCTCCAGGTAATTATTCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCTTCGGAGAGGATGTATCCGcc                                                        <  1:1052170/139‑1 (MQ=255)                                                                       gATGCTGG‑CGAGGTAACAGGCAATTTTTCGGGGATACTGCTCCAGGTAATTATTCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCTTCGGAGAGGATGTATCCGcc                                                        <  2:1242302/139‑1 (MQ=255)                                                                       gATGCTGG‑CGAGGTAACAGGCAATTTTTCGGGGATACTGCTCCAGGTAATTATTCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCTTCGGAGAGGATGTATCCGcc                                                        <  1:999793/139‑1 (MQ=255)                                                                       gATGCTGG‑CGAGGTAACAGGCAATTTTTCGGGGATACTGCTCCAGGTAATTATTCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCTTCGGAGAGGATGTATCCGcc                                                        <  2:1744846/139‑1 (MQ=255)                                                                       gATGCTGG‑CGAGGTAACAGGCAATTTTTCGGGGATACTGCTCCAGGTAATTATTCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCTTCGGAGAGGATGTATCCGcc                                                        <  1:1769382/139‑1 (MQ=255)                                                                          gCTGG‑CGAGGTAACAGGCAATTTTTCGGGGATACTGCTCCAGGTAATTATTCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCTTCGGAGAGGATGTATCCGCCAgc                                                     >  2:1047470/1‑139 (MQ=255)                                                                          gCTGG‑CGAGGTAACAGGCAATTTTTCGGGGATACTGCTCCAGGTAATTATTCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCTTCGGAGAGGATGTATCCGCCAgc                                                     >  2:1324822/1‑139 (MQ=255)                                                                           cTGG‑CGAGGTAACAGGCAATTTTTCGGGGATACTGCTCCAGGTAATTATTCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCTTCg                                                                         >  2:38622/1‑118 (MQ=255)                                                                           cTGG‑CGAGGTAACAGGCAATTTTTCGGGGATACTGCTCCAGGTAATTATTCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCTTCg                                                                         <  1:38622/118‑1 (MQ=255)                                                                           cTGG‑CGAGGTAACAGGCAATTTTTCGGGGATACTGCTCCAGGTAATTATTCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCTTCGGAGAgg                                                                   >  2:1672261/1‑124 (MQ=255)                                                                           cTGG‑CGAGGTAACAGGCAATTTTTCGGGGATACTGCTCCAGGTAATTATTCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCTTCGGAGAgg                                                                   <  1:1672261/124‑1 (MQ=255)                                                                           cTGG‑CGAGGTAACAGGCAATTTTTCGGGGATACTGCTCCAGGTAATTATTCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCTTCGGAGAGGATGTATCCGCCAgcg                                                    >  1:1626468/1‑139 (MQ=255)                                                                             gg‑CGAGGTAACAGGCAATTTTTCGGGGATACTGCTCCAGGTAATTATTCGGTTAGGAGTTAAGGCTGttac                                                                                                                      <  2:66424/71‑4 (MQ=255)                                                                             gg‑CGAGGTAACAGGCAATTTTTCGGGGATACTGCTCCAGGTAATTATTCGGTTAGGAGTTAAGGCTGttac                                                                                                                      >  1:66424/1‑68 (MQ=255)                                                                             gg‑CGAGGTAACAGGCAATTTTTCGGGGATACTGCTCCAGGTAATTATTCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCtt                                                                           >  2:1550235/1‑114 (MQ=255)                                                                             gg‑CGAGGTAACAGGCAATTTTTCGGGGATACTGCTCCAGGTAATTATTCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCtt                                                                           <  1:1550235/114‑1 (MQ=255)                                                                             gg‑CGAGGTAACAGGCAATTTTTCGGGGATACTGCTCCAGGTAATTATTCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCTTCGGAGAGGATGTATCCGCCAgcgc                                                   <  1:678713/138‑1 (MQ=255)                                                                             gg‑CGAGGTAACAGGCAATTTTTCGGGGATACTGCTCCAGGTAATTATTCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCTTCGGAGAGGATGTATCCGCCAgcgc                                                   >  2:678713/1‑138 (MQ=255)                                                                                cGAGGTAACAGGCAATTTTTCGGGGATACTGCTCCAGGTAATTATTCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCTTCGGAGAGGATGTATCCGCCAGCGCACg                                                >  2:1027759/1‑139 (MQ=255)                                                                                  aGGTAACAGGCAATTTTTCGGGGATACTGCTCCAGGTAATTATTCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCTTCGGAGAGGATGTATCCGCCAGCGCACGtt                                              <  2:1626468/139‑1 (MQ=255)                                                                                   ggTAACAGGCAATTTTTCGGGGATACTGCTCCAGGTAATTATTCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCTTCGGAGAGGATGTATCCGCCAGCGCACGTTc                                             >  1:328421/1‑139 (MQ=255)                                                                                    gTAACAGGCAATTTTTCGGGGATACTGCTCCAGGTAATTATTCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCTTCGGAGAGGATGTATCCGCCAGCGCACGTTCt                                            >  2:1676306/1‑139 (MQ=255)                                                                                         aGGCAATTTTTCGGGGATACTGCTCCAGGTAATTATTCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCTTCGGAGAGGATGTATCCGCCAGCGCACGTTCTGTTTc                                       >  2:1235948/1‑139 (MQ=255)                                                                                                   tCGGGGATACTGCTCCAGGTAATTATTCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCTTCGGAGAGGATGTATCCGCCAGCGCACGTTCTGttt                                        >  2:1767257/1‑128 (MQ=255)                                                                                                   tCGGGGATACTGCTCCAGGTAATTATTCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCTTCGGAGAGGATGTATCCGCCAGCGCACGTTCTGttt                                        <  1:1767257/128‑1 (MQ=255)                                                                                                        gATACTGCTCCAGGTAATTATTCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCTTCGGAGAGGATGTATCCGCCAGCGCACGTTCTGTTTCCTGTAACAACAGttt                        <  2:328421/139‑1 (MQ=255)                                                                                                          tACTGCTCCAGGTAATTATTCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCTTCGGAGAGGATGTATCCGCCAGCGCACGTTCTGTTTCCTGTAACAACAGTTTGt                      >  1:952235/1‑139 (MQ=255)                                                                                                              gCTCCAGGTAATTATTCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCTTCGGAGAGGATGTATCCGCCAGCGCACGTTCTGTTTCCTGTAACAACAGTTTGTCATc                  <  1:473736/139‑1 (MQ=255)                                                                                                               cTCCAGGTAATTATTCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCTTCGGAGAGGATGTATCCGCCAGCGCACGTTCTGTTTCCTGTAACAACAGTTTGTCATCt                 <  1:1324822/139‑1 (MQ=255)                                                                                                                 ccAGGTAATTAATCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCTTAGGAGAGGAAGTATCCGCCAGCGCACGTTCTGTTTCCTGTAACAACAGTTTGTCATCTGt               >  1:797407/1‑139 (MQ=255)                                                                                                                    ggTAATTATTCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGAt                                                                                                          <  1:1050657/45‑1 (MQ=255)                                                                                                                    ggTAATTATTCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGAt                                                                                                          >  2:1050657/1‑45 (MQ=255)                                                                                                                    ggTAATTATTCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCTTCGGAGAGGATGTATc                                                            <  2:1463616/91‑1 (MQ=255)                                                                                                                    ggTAATTATTCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCTTCGGAGAGGATGTATc                                                            >  1:1463616/1‑91 (MQ=255)                                                                                                                    ggTAATTATTCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCTTCGGAGAGGATGTATCCg                                                          <  2:572867/93‑1 (MQ=255)                                                                                                                    ggTAATTATTCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCTTCGGAGAGGATGTATCCg                                                          >  1:572867/1‑93 (MQ=255)                                                                                                                    ggTAATTATTCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCTTCGGAGAGGATGTATCCGCCAGCGCACGTTCTGTTTCCTGTAACAACAGTTTGTCATCTGtttt            >  2:1091120/1‑139 (MQ=255)                                                                                                                    ggTAATTATTCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCTTCGGAGAGGATGTATCCGCCAGCGCACGTTCTGTTTCCTGTAACAACAGTTTGTCATCTGtttt            >  2:1446591/1‑139 (MQ=255)                                                                                                                     gTAATTATTCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCTTCg                                                                         >  1:911408/1‑77 (MQ=255)                                                                                                                     gTAATTATTCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCTTCg                                                                         <  2:911408/77‑1 (MQ=255)                                                                                                                         ttattCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCTTCGGAGAGGATGTATCCGCCAGCGCACGTTCTGTTTCCTGTAACAACAGt                          <  2:1387508/120‑1 (MQ=255)                                                                                                                         ttattCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCTTCGGAGAGGATGTATCCGCCAGCGCACGTTCTGTTTCCTGTAACAACAGt                          >  1:1387508/1‑120 (MQ=255)                                                                                                                         ttattCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCTTCGGAGAGGATGTATCCGCCAGCGCACGTTCTGTTTCCTGTAACAACAGTTTGTCATCTGTTTTACggg       >  2:701934/1‑139 (MQ=255)                                                                                                                         ttattCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCTTCGGAGACGATGTATCCGCCAGCGCACGTTCTGTTTCCTGTAACAACAGTTTGTCATCTGTTTTACggg       >  1:1137539/1‑139 (MQ=255)                                                                                                                            ttCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCTTCGGAGAGGATGTATCCGCCAGCGCACGTTCTGTTTCCTGTAACAACAGTTTGTCATCTGTTTTACGGgaag    >  1:750712/1‑139 (MQ=255)                                                                                                                            ttCGGTTAGGAGTTAAGGCTGTTACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCTTCGGAGAGGATGTATCCGCCAGCGCACGTTCTGTTTCCTGTAACAACAGTTTGTCATCTGTTTTACGGgaag    <  1:48672/139‑1 (MQ=255)                                                                                                                              cGGTTAGGAGTTAAGGCTGTTACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCTTCGGAGAGGATGTATCCGCCAGCGCACGTTCTGTTTCCTGTAACAACAGTTTGTCATCTGTTTTACGGgaagcg  >  1:1091561/1‑139 (MQ=255)                                                                                                                                 |                                                                                                                                        GCATGGCGAAATGACGTGAGTACCGGCGAAGGATACCATCAAGCTGGCCAAGAAAGTTATCCAGTTTACTGATGCTGG‑CGAGGTAACAGGCAATTTTTCGGGGATACTGCTCCAGGTAATTATTCGGCTAGGAGTTAAGGCTGTCACACGGATTTGGATGAGAACCCATCATGTGCAGGAAAATTATCTTCGGAGAGGATGTATCCGCCAGCGCACGTTCTGTTTCCTGTAACAACAGTTTGTCATCTGTTTTACGGGAAGCG  >  NC_000913/4499916‑4500178

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑