Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,782,393	(C)5→4	coding (334/4581 nt)	ypjA ←	adhesin‑like autotransporter

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,782,389	0	C	.	100.0%	370.5 / NA	89	coding (338/4581 nt)	ypjA	adhesin‑like autotransporter
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base . (45/44);  total (45/44)

TACCACCATCAATGAGTATTCCATTCGCACTCCCTCCCTCTACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATACCCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGATTCAATAAGACTTCCATTAGATACCCCGCCATGAACA  >  NC_000913/2782252‑2782523                                                                                                                                          |                                                                                                                                       tACCACCATCAATGAGTATTCCATTCGCACTCCCTCCCTCTACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATAcc                                                                                                                                       <  2:1053282/139‑1 (MQ=255) tACCACCATCAATGAGTATTCCATTCGCACTCCCTCCCTCTACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATAcc                                                                                                                                       <  1:1396235/139‑1 (MQ=255)       caTCAATGAGTATTCCATTCGCACTCCCTCCCTCTACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATAccccgtca                                                                                                                                 <  1:1311270/139‑5 (MQ=255)         tCAATGAGTATTCCATTCGCACTCCCTCCCTCTACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATg                                                                                                                              >  1:895210/1‑139 (MQ=255)          cAATGAGTATTCCATTCGCACTCCCTCCCTCTACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTTCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGa                                                                                                                             >  1:501539/1‑139 (MQ=255)                    tCCATTCGCACTCCCTCCCTCTACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTc                                                                                                                   <  2:261848/139‑1 (MQ=255)                       aTTCGCACTCCCTCCCTCTACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACACCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGCCTGTCTGc                                                                                                                >  1:895795/1‑139 (MQ=255)                         tCGCACTCCCTCCCTCTACGCGTGAAGCACCGCCCTTATTTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCa                                                                                                              <  1:755413/139‑1 (MQ=255)                         tCGCACTCCCTCCCTCTACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCa                                                                                                              >  1:185396/1‑139 (MQ=255)                         tCGCACTCCCTCCCTCTACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCa                                                                                                              >  1:75774/1‑139 (MQ=255)                         tCGCACTCCCTCCCTCTACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGCGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCa                                                                                                              >  2:755413/1‑139 (MQ=255)                                 cctccctcTACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATATACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAAt                                                                                                      <  2:1080230/139‑1 (MQ=255)                                   tccctcTACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCTGTCATGAATTGACTGTCTGCCACCGTTAATgg                                                                                                    <  2:895795/139‑1 (MQ=255)                                           cgcgTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGtatta                                                                                            >  1:949975/1‑139 (MQ=255)                                           cgcgTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATCGACTGTCTGCCACCGTTAATGGTTg                                                                                                 >  1:574637/1‑134 (MQ=255)                                           cgcgTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATCGACTGTCTGCCACCGTTAATGGTTg                                                                                                 <  2:574637/134‑1 (MQ=255)                                             cgTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATAccccgt                                                                                                                                   >  2:1102668/1‑97 (MQ=255)                                             cgTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATAccccgt                                                                                                                                   <  1:1102668/99‑3 (MQ=255)                                             cgTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAAtt                                                                                                                          <  2:709938/107‑1 (MQ=255)                                             cgTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAAtt                                                                                                                          >  1:709938/1‑107 (MQ=255)                                             cgTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATgg                                                                                                    <  1:771685/129‑1 (MQ=255)                                             cgTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATgg                                                                                                    >  2:771685/1‑129 (MQ=255)                                               tGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAg                                                                                        >  2:574399/1‑139 (MQ=255)                                                 aaGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGcc                                                                                      >  2:33032/1‑139 (MQ=255)                                                         cccTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGtt                                                                                                  <  2:1315112/119‑1 (MQ=255)                                                         cccTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGtt                                                                                                  >  1:1315112/1‑119 (MQ=255)                                                            ttAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTTCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACaaa                                                                           <  2:501539/139‑1 (MQ=255)                                                                   tCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTa                                                                    >  2:883033/1‑139 (MQ=255)                                                                    cGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTg                                                                                                 >  1:559251/1‑109 (MQ=255)                                                                    cGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTg                                                                                                 <  2:559251/109‑1 (MQ=255)                                                                    cGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTAt                                                                   >  1:765892/1‑139 (MQ=255)                                                                    cGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTAt                                                                   >  1:606573/1‑139 (MQ=255)                                                                      ttCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCca                                                                               <  2:1187699/125‑1 (MQ=255)                                                                      ttCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCca                                                                               >  1:1187699/1‑125 (MQ=255)                                                                      ttCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGa                                                                 <  1:883033/139‑1 (MQ=255)                                                                      ttCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGa                                                                 >  1:212796/1‑139 (MQ=255)                                                                      ttCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGa                                                                 >  2:133253/1‑139 (MQ=255)                                                                       tCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGAc                                                                <  2:75774/139‑1 (MQ=255)                                                                           ttGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTcc                                                            >  2:803022/1‑139 (MQ=255)                                                                            tGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCt                                                           <  1:33032/139‑1 (MQ=255)                                                                            tGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCt                                                           <  2:185396/139‑1 (MQ=255)                                                                             gCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTTTTATg                                                                  >  2:1149275/1‑131 (MQ=255)                                                                             gCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATg                                                                  <  1:1149275/131‑1 (MQ=255)                                                                                   aCCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGAc                                                                <  2:1503657/127‑1 (MQ=255)                                                                                   aCCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGAc                                                                >  1:1503657/1‑127 (MQ=255)                                                                                        cTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGatat                                               <  2:895210/139‑1 (MQ=255)                                                                                            ataAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATccac                                           <  1:133253/139‑1 (MQ=255)                                                                                              aaaCGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCTACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATccacca                                         <  2:1343251/139‑1 (MQ=255)                                                                                               aaCGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTaa                                                                                                       <  2:1478922/76‑1 (MQ=255)                                                                                               aaCGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTaa                                                                                                       >  1:1478922/1‑76 (MQ=255)                                                                                                  gTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCt                                                           >  2:1488362/1‑117 (MQ=255)                                                                                                  gTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCt                                                           <  1:1488362/117‑1 (MQ=255)                                                                                                  gTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGAtt                                     >  1:704859/1‑139 (MQ=255)                                                                                                   tCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGa                                                                                                                        <  1:884016/55‑1 (MQ=255)                                                                                                   tCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGa                                                                                                                        >  2:884016/1‑55 (MQ=255)                                                                                                   tCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGt                                                                                                   >  2:635916/1‑76 (MQ=255)                                                                                                   tCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGt                                                                                                   <  1:635916/76‑1 (MQ=255)                                                                                                   tCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGATTc                                    >  2:236300/1‑139 (MQ=255)                                                                                                    ccTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGGCCCACAAAATTGTTATGACTTCCTATATCTTg                                                   <  2:895820/123‑1 (MQ=255)                                                                                                    ccTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTg                                                   >  1:895820/1‑123 (MQ=255)                                                                                                     cTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATg                                                                  >  1:1168498/1‑107 (MQ=255)                                                                                                     cTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATg                                                                  <  2:1168498/107‑1 (MQ=255)                                                                                                     cTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGa                                                                 >  2:1364881/1‑108 (MQ=255)                                                                                                     cTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGa                                                                 <  1:1364881/108‑1 (MQ=255)                                                                                                     cTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGATTCaa                                  >  2:672986/1‑139 (MQ=255)                                                                                                       gATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGATTCAAt                                 >  1:238989/1‑138 (MQ=255)                                                                                                       gATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGATTCAAt                                 <  2:238989/138‑1 (MQ=255)                                                                                                       gATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGATTCAATa                                <  2:765892/139‑1 (MQ=255)                                                                                                          tGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGtatta                                                                                            >  2:1229185/1‑76 (MQ=255)                                                                                                          tGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGtatta                                                                                            <  1:1229185/76‑1 (MQ=255)                                                                                                           gCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGATTCAATAAGAc                            <  1:574399/139‑1 (MQ=255)                                                                                                           gCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGATTCAATAAGAc                            <  2:704859/139‑1 (MQ=255)                                                                                                            ccACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGATTCAATAAGACt                           >  2:483594/1‑139 (MQ=255)                                                                                                             cACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGATTCAATAAGACtt                          <  2:212796/139‑1 (MQ=255)                                                                                                             cACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGATTCAATAAGACtt                          <  1:803022/139‑1 (MQ=255)                                                                                                                tctcGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATC‑TGATATccac                                           <  2:482793/118‑1 (MQ=255)                                                                                                                tctcGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATC‑TGATATccac                                           >  1:482793/1‑118 (MQ=255)                                                                                                                    gATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGc                                                                                                                >  2:1468048/1‑46 (MQ=255)                                                                                                                    gATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGc                                                                                                                <  1:1468048/46‑1 (MQ=255)                                                                                                                    gATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGATTCAATAAGACTTCCATTAg                   <  2:949975/139‑1 (MQ=255)                                                                                                                          cGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGATTCAATAAGACTTCCATTAGATAccc             >  1:784465/1‑139 (MQ=255)                                                                                                                            tACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCtata                                                        >  1:1303403/1‑94 (MQ=255)                                                                                                                            tACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCtata                                                        <  2:1303403/94‑1 (MQ=255)                                                                                                                                  tgGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGATTCAATAAg                              >  1:1380079/1‑114 (MQ=255)                                                                                                                                  tgGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGATTCAATAAg                              <  2:1380079/114‑1 (MQ=255)                                                                                                                                   ggAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATgg                                                                                                    <  2:1046097/43‑1 (MQ=255)                                                                                                                                   ggAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATgg                                                                                                    >  1:1046097/1‑43 (MQ=255)                                                                                                                                   ggAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGcc                                                                                      >  1:1227071/1‑57 (MQ=255)                                                                                                                                   ggAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGcc                                                                                      <  2:1227071/57‑1 (MQ=255)                                                                                                                                   ggAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGa                                       <  2:238617/104‑1 (MQ=255)                                                                                                                                   ggAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGa                                       >  1:238617/1‑104 (MQ=255)                                                                                                                                   ggAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGATTCAATAAGACTTCCATTAGATACCCCGCCATGaa    >  2:1484627/1‑139 (MQ=255)                                                                                                                                     aaaTA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGATTCAATAAGACTTCCATTAGATACCCCGCCATGAACa  <  1:1484627/139‑1 (MQ=255)                                                                                                                                     aaaTA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGATTCAATAAGACTTCCATTAGATACCCCGCCATGAACa  <  1:483594/139‑1 (MQ=255)                                                                                                                                          |                                                                                                                                       TACCACCATCAATGAGTATTCCATTCGCACTCCCTCCCTCTACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATACCCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGATTCAATAAGACTTCCATTAGATACCCCGCCATGAACA  >  NC_000913/2782252‑2782523

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑