| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,018,760 | G→A | *476* (TAG→TAA) | rmuC → | DNA recombination protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,018,760 | 0 | G | A | 100.0% | 223.8 / NA | 69 | *476* (TAG→TAA) | rmuC | DNA recombination protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (32/37); total (32/37) | |||||||||||
ACGCGAGATTAATCCGGATTTGGCTGAACAGGCGGTGAGCCAGGATGAAGAGTATCGACTTCGGTCGGTTCCGGAGCAGCCGAATGATGAAGCTTATCAACGCGATG‑ATGAATATAATCAGCAGTCGCGCTAGCCCATTGGGAGTAGTTAAGCCGGGTAGAAATCTAGGGCATCGACGCCCAATCTGTTACACTTCTGGAACAATTTTTTGATGAGCAGGCATTGAGATGGTGGATAAGTCACAAGAAACGACGCACTTTGGTTTT > NC_000913/4018628‑4018893 | aCGCGAGATTAATCCGGATTTGGCTGAACAGGCGGTGAGCCAGGATGAAGAGTATCGACTTCGGTCGGTTCCGGAGCAGCCGAATGATGAAGCTTATCAACGCGATG‑ATGAATATAATCAGCAGTCGCGCTAACCCAtt < 1:289614/139‑1 (MQ=255) cgAGATTAATCCGGATTTGGCTGAACAGGCGGTGAGCCAGGATGAAGAGTATCGACTTCGGTCGGTTCCGGAGCAGCCGAATGATGAAGCTTATCAACGCGATG‑ATGAATATAATCAGCAGTCGCGCTAACCCATTggg < 2:700563/139‑1 (MQ=255) aTCCGGATTTGGCTGAACAGGCGGTGAGCCAGGATGAAGAGTATCGACTTCGGTCGGTTCCGGAGCAGCCGAATGATGAAGCTTATCAACGCGATG‑ATGAATATAATCAGCAGTCGCGCTAACCCATTGGGAGTAGTTa < 1:310083/139‑1 (MQ=255) gCGGTGAGCCAGGATGAAGAGTATCGACTTCGGTCGGTTCCGGAGCAGCCGAATGATGAAGCTTATCAACGCGATG‑ATGAATATAATCAGCAGTCGCGCTAACCCATTGGGAGTAGTTAAGCCGGGTAGAAATCTAggg > 2:1201663/1‑139 (MQ=255) ggTGAGCCAGGATGAAGAGTATCGACTTCGGTCGGTTCCGGAGCAGCCGAATGATGAAGCTTATCAACGCGATG‑ATGAATATAATCAGCAGTCGCGCTAACCCATTGGGAGTAGTTAAg < 1:257410/119‑1 (MQ=255) ggTGAGCCAGGATGAAGAGTATCGACTTCGGTCGGTTCCGGAGCAGCCGAATGATGAAGCTTATCAACGCGATG‑ATGAATATAATCAGCAGTCGCGCTAACCCATTGGGAGTAGTTAAg > 2:257410/1‑119 (MQ=255) gAGCCAGGATGAAGAGTATCGACTTCGGTCGGTTCCGGAGCAGCCGAATGATGAAGCTTATCAACGCGATG‑ATGAATATAATCAGCAGTCGCGCTAACCCATTGGGAGTAGTTAAGCCGGGTAGAAATCTAGGGCATCg > 2:694328/1‑139 (MQ=255) ccAGGATGAAGAGTATCGACTTCGGTCGGTTCCGGAGCAGCCGAATGATGAAGCTTATCAACGCGATG‑ATGAATATAATCAGCAGTCGCGCTAACCCATTGGGAGTAGTTAAGCCGGGTAGAAATCTAGGGCATCGACg > 1:1473329/1‑139 (MQ=255) cAGGATGAAGAGTATCGACTTCGGTCGGGTCCGGAGAAGCCGAATGATGAAGCTTATCAACGCGATG‑AGGAATATAATCAGCAGTCGCGCTAACCCATTGGGAGTAGTTAAGCCGGGTAGAAATCTAGGGCATCGACGc < 2:119188/139‑1 (MQ=255) aGGATGAAGAGTATCGACTTCGGTCGGTTCCGGAGCAGCCGAATGATGAAGCTTATCAACGCGATG‑ATGAATATAATCAGCAGTCGCGCTAACCCATTGGGAGTAGTTAAg < 2:1504516/111‑1 (MQ=255) aGGATGAAGAGTATCGACTTCGGTCGGTTCCGGAGCAGCCGAATGATGAAGCTTATCAACGCGATG‑ATGAATATAATCAGCAGTCGCGCTAACCCATTGGGAGTAGTTAAg > 1:1504516/1‑111 (MQ=255) aGGATGAAGAGTATCGACTTCGGTCGGTTCCGGAGCAGCCGAATGATGAAGCTTATCAACGCGATG‑ATGAATATAATCAGCAGTCGCGCTAACCCATTGGGAGTAGTTAAGCCGGGTAGAAATCTAGGGCATCGACGcc > 1:129348/1‑139 (MQ=255) aGGATGAAGAGTATCGACTTCGGTCGGTTCCGGAGCAGCCCAATGATGACGCTTATCAACGCGATG‑ATGAATATAATCAGCAGTCGCGCTAACCCATTGGGAGTAGTTAAGCCGGGTAGAAATCTAGGGCATCGACGcc < 2:1426723/139‑1 (MQ=255) aTGAAGAGTATCGACTTCGGTCGGTTCCGGAGCAGCCGAATGATGAAGCTTATCAACGCGATG‑ATGAATATAATCAGCAGTCGCGCTAACCCATTGGGAGTAGTTAAGCCGGGTAGAAATCTAGGGCATCGACGCCCaa < 2:1473329/139‑1 (MQ=255) gTATCGACTTCGGTCGGTTCCGGAGCAGCCGAATGATGAAGCTTATCAACGCGATG‑ATGAATATAATCAGCAGTCGCGCTAACCCATTGGGAGTAGTTAAGCCGGGTAGAAATCTAGGGCATCGACGCCCAATCTGTTa < 1:1415956/139‑1 (MQ=255) gTATCGACTTCGGTCGGTTCCGGAGCAGCCGAATGATGAAGCTTATCAACGCGATG‑ATGAATATAATCAGCAGTCGCGCTAACCCATTGGGAGTAGTTAAGCCGGGTAGAAATCTAGGGCATCGACGCCCAATCTGTTa < 1:694328/139‑1 (MQ=255) tATCGACTTCGGTCGGTTCCGGAGCAGCCGAATGATGAAGCTTATCAACGCGATGAATGAATATAATCAGCAGTCGCGCTAACCCATTGGGAGTAGTTAAGCCGGGTAGAAATC‑AGGGCATCGACGCCCAATCTGTTac > 2:93986/1‑139 (MQ=255) tATCGACTTCGGTCGGTTCCGGAGCAGCCGAATGATGAAGCTTATCAACGCGATG‑ATGAATATAATCAGCAGTCGCGCTAACCCAtt > 2:481553/1‑87 (MQ=255) tATCGACTTCGGTCGGTTCCGGAGCAGCCGAATGATGAAGCTTATCAACGCGATG‑ATGAATATAATCAGCAGTCGCGCTAACCCAtt < 1:481553/87‑1 (MQ=255) tATCGACTTCGGTCGGTTCCGGAGCAGCCGAATGATGAAGCTTATCAACGCGATG‑ATGAATATAATCAGCAGTCGCGCTAACCCATTGGGAGTAGTTAAGCCGGGTAGAAATCTAGGGCATCGACGCCCAATCTGTTac < 2:906921/139‑1 (MQ=255) ggtcggtTCCGGAGCAGCCGAATGATGAAGCTTATCAACGCGATG‑ATGAATATAATCAGCAGTCGCGCTAACCCATTGGGAGTAGTTAAGCCGGGTAGAAATCTAGGGCATCGACGCCCAATCTGTTa < 2:754505/128‑1 (MQ=255) ggtcggtTCCGGAGCAGCCGAATGATGAAGCTTATCAACGCGATG‑ATGAATATAATCAGCAGTCGCGCTAACCCATTGGGAGTAGTTAAGCCGGGTAGAAATCTAGGGCATCGACGCCCAATCTGTTa > 1:754505/1‑128 (MQ=255) agcCGAATGATGAAGCTTATCAACGCGATGAATGAATATAATCAGCAGTCGCGCTAACCCATTGGGAGTAGTTAAGCCGGGTAGAAATC‑AGGGCATCGACGCCCAATCTGTTACACTTCTGGAACAATTTTTTGATGAg < 1:93986/139‑1 (MQ=255) gcCGAATGATGAAGCTTATCAACGCGATG‑ATGAATATAATCAGCAGTCGCGCTAACCCATTGGGAGTAGTTAAGCCGGGTAGAAATCTAGGGCATCGACGCCCAATCTGTTACACTTCTGGAACAATTTTTTGATGAGc > 2:1429297/1‑139 (MQ=255) gcCGAATGATGAAGCTTATCAACGCGATG‑ATGAATATAATCAGCAGTCGCGCTAACCCATTGGGAGTAGTTAAGCCGGGTAGAAATCTAGGGCATCGACGCCCAATCTGTTACACTTCTGGAACAATTTTTTGATGAGc > 1:1277175/1‑139 (MQ=255) ccGAATTAAGAAGCTTATCAAAGCGATG‑ATGAATATAATCAGCAGTCGCGCTAACCCATTGGGAGTAGTTAAGCCGGGTAGAAATCCAGGGCAACGGCCCCCAATCTGTTACCCTTCTGGAACAATTTTTTGATGAGCa < 1:1141720/139‑1 (MQ=255) tgaAGCTTATCAACGCGATG‑ATGAATATAATCAGCAGTCGCGCTAACCCATTGGGAGTAGTTAAGCCGGGTAGAAATCTAGGGCATCGACGCCCAATCTGTTAAACTTCTGGAACAATTTTTTGATGAGAAGGCATTga > 1:819748/1‑139 (MQ=255) gaAGCTTATCAACGCGATG‑ATGAATATAATCAGCAGTCGCGCTAACCCATTGGGAGTAGTTAAGCCGGGTAGAAATCTAGGGCATCGACGCCCAATCTGTTACACTTCTGGAACAATTTTCTGATGAGCAGGCATTgag < 2:835246/139‑1 (MQ=255) aaGCTTATCAACGCGATG‑ATGAATATAATCAGCAGTCGCGCTAACCCATTGGGa < 1:36425/54‑1 (MQ=255) aaGCTTATCAACGCGATG‑ATGAATATAATCAGCAGTCGCGCTAACCCATTGGGa > 2:36425/1‑54 (MQ=255) aaGCTTATCAACGCGATG‑ATGAATATAATCAGCAGTCGCGCTAACCCATTGGGAGTAGTTAAGCCGGGTAGAAATc > 2:397471/1‑76 (MQ=255) aaGCTTATCAACGCGATG‑ATGAATATAATCAGCAGTCGCGCTAACCCATTGGGAGTAGTTAAGCCGGGTAGAAATc < 1:397471/76‑1 (MQ=255) aaGCTTATCAACGCGATG‑ATGAATATAATCAGCAGTCGCGCTAACCCATTGGGAGTAGTTAAGCCGGGTAGAAATCTAGGGCATCGACGcc > 2:450162/1‑91 (MQ=255) aaGCTTATCAACGCGATG‑ATGAATATAATCAGCAGTCGCGCTAACCCATTGGGAGTAGTTAAGCCGGGTAGAAATCTAGGGCATCGACGcc < 1:450162/91‑1 (MQ=255) aaGCTTATCAACGCGATG‑ATGAATATAATCAGCAGTCGCGCTAACCCATTGGGAGTAGTTAAGCCGGGTAGAAATCTAGGGCATCGACGCCCAATCTGTTa < 1:843713/101‑1 (MQ=255) aaGCTTATCAACGCGATG‑ATGAATATAATCAGCAGTCGCGCTAACCCATTGGGAGTAGTTAAGCCGGGTAGAAATCTAGGGCATCGACGCCCAATCTGTTa > 2:843713/1‑101 (MQ=255) aTCAACGCGATG‑ATGAATATAATCAGCAGTCGCGCTAACCCCTTGGGAGTAGTTAAGcc < 2:862313/59‑1 (MQ=255) aTCAACGCGATG‑ATGAATATAATCAGCAGTCGCGCTAACCCATTGGGAGTAGTTAAGcc < 1:1139530/59‑1 (MQ=255) aTCAACGCGATG‑ATGAATATAATCAGCAGTCGCGCTAACCCATTGGGAGTAGTTAAGcc > 2:1139530/1‑59 (MQ=255) aTCAACGCGATG‑ATGAATATAATCAGCAGTCGCGCTAACCCATTGGGAGTAGTTAAGcc > 1:862313/1‑59 (MQ=255) tCAACGCGATG‑ATGAATATAATCAGCAGTCGCGCTAACCCATTGGGAGTAGTTAAGCCGGGTAGAAATCTAGGGCATCGACGCCCAATCTGTTACACTTCTGGAACAATTTTTTGATGAg > 1:555826/1‑120 (MQ=255) tCAACGCGATG‑ATGAATATAATCAGCAGTCGCGCTAACCCATTGGGAGTAGTTAAGCCGGGTAGAAATCTAGGGCATCGACGCCCAATCTGTTACACTTCTGGAACAATTTTTTGATGAg < 2:555826/120‑1 (MQ=255) cAACGCGATG‑ATGAATATAATCAGCAGTCGCGCTAACCCATTGGGAGTAGTTAAGCCGGGTAGAAATCTAGGGCATCGACGCCCAATCTGTTACACTTCTGGAACAATTTTTTGATGAGCAGGCATTGAGATGGTGGAt < 1:1429297/139‑1 (MQ=255) cgcgATG‑ATGAATATAATCAGCAGTCGCGCTAACCCATTGGGAGTAGTTAAGCCGGGTAGAAATCTAGGGCATCGACGCCCAATc > 1:34399/1‑85 (MQ=255) cgcgATG‑ATGAATATAATCAGCAGTCGCGCTAACCCATTGGGAGTAGTTAAGCCGGGTAGAAATCTAGGGCATCGACGCCCAATc < 2:34399/85‑1 (MQ=255) cgcgATG‑ATGAATATAATCAGCAGTCGCGCTAACCCATTGGGAGTAGTTAAGCCGGGTAGAAATCTAGGGCATCGACGCCCAATCTGTTACACTTCTGGAACAATTTTTTGATGAGc > 2:662853/1‑117 (MQ=255) cgcgATG‑ATGAATATAATCAGCAGTCGCGCTAACCCATTGGGAGTAGTTAAGCCGGGTAGAAATCTAGGGCATCGACGCCCAATCTGTTACACTTCTGGAACAATTTTTTGATGAGc < 1:662853/117‑1 (MQ=255) tg‑atgaATATAATCAGCAGTCGCGCTAACCCATTGGGAGTAGTTAAGCCGGGTAGAAATCTAGGGCATCGACGCCCAATCTGTTACACTTCTGGAACAATTTTTTGATGAGc < 2:1266317/112‑1 (MQ=255) tg‑atgaATATAATCAGCAGTCGCGCTAACCCATTGGGAGTAGTTAAGCCGGGTAGAAATCTAGGGCATCGACGCCCAATCTGTTACACTTCTGGAACAATTTTTTGATGAGc > 1:1266317/1‑112 (MQ=255) tataATCAGCAGTCGCGCTAACCCATTGGGAGTAGTTAAGCCGGGTAGAAATCTAGGGCATCGACGcc < 2:1446960/68‑1 (MQ=255) tataATCAGCAGTCGCGCTAACCCATTGGGAGTAGTTAAGCCGGGTAGAAATCTAGGGCATCGACGcc > 1:1446960/1‑68 (MQ=255) aaTCAGCAGTCGCGCTAACCCATTGGGAGTAGTTAAGCCGGGTAGAAATCTAGGGCATCGACGCCCAATCTGTTACACTTCTGGAACAATTTTTTGATGAGCAGGCATTGAGATGGTGGAt > 2:1173769/1‑121 (MQ=255) aaTCAGCAGTCGCGCTAACCCATTGGGAGTAGTTAAGCCGGGTAGAAATCTAGGGCATCGACGCCCAATCTGTTACACTTCTGGAACAATTTTTTGATGAGCAGGCATTGAGATGGTGGAt < 1:1173769/121‑1 (MQ=255) tCAGCAGTCGCGCTAACCCATTGGGAGTAGTTAAGCCGGGTAGAAATCTAGGGCATCGACGCCCAATCTGTTACACTTCTGGAACAATTTTTTGATGAGCAGGCATTGAGATGGTGGATAAGTCACAAGAAacgac > 2:1256359/1‑136 (MQ=255) tCAGCAGTCGCGCTAACCCATTGGGAGTAGTTAAGCCGGGTAGAAATCTAGGGCATCGACGCCCAATCTGTTACACTTCTGGAACAATTTTTTGATGAGCAGGCATTGAGATGGTGGATAAGTCACAAGAAacgac < 1:1256359/136‑1 (MQ=255) tCAGCAGTCGCGCTAACCCATTGGGAGTAGTTAAGCCGGGTAGAAATCTAGGGCATCGACGCCCAATCTGTTACACTTCTGGAACAATTTTTTGATGAGCAGGCATTGAGATGGTGGATAAGTCACAAGAAACGACGCa > 2:1297098/1‑139 (MQ=255) gcagTCGCGCTAACCCATTGGGAGTAGTTAAGCCGGGTAGAAATCTAGGGCATCGACGCCCaa < 2:1495857/63‑1 (MQ=255) gcagTCGCGCTAACCCATTGGGAGTAGTTAAGCCGGGTAGAAATCTAGGGCATCGACGCCCaa > 1:1495857/1‑63 (MQ=255) gcagTCGCGCTAACCCATTGGGAGTAGTTAAGCCGGGTAGAAATCTAGGGCATCGACGCCCAATCTGTTACACTTCTGGAACAATTTTTTGATGAGCAGGCAt < 2:1014240/103‑1 (MQ=255) gcagTCGCGCTAACCCATTGGGAGTAGTTAAGCCGGGTAGAAATCTAGGGCATCGACGCCCAATCTGTTACACTTCTGGAACAATTTTTTGATGAGCAGGCAt > 1:1014240/1‑103 (MQ=255) cagTCGCGCTAACCCATTGGGAGTAGTTAAGCCGGGTAGAAATCTAGGGCATCGACGCCCAATCTGTTACACTTCTGGAACAATTTTTTGATGAGCAGGCATTGAGATGGTGGATAAGTCACAAGAAACGACGCACttt < 2:129348/139‑1 (MQ=255) agTCGCGCTAACCCATTGGGAGTAGTTAAGCCGGGTAGAAATCTAGGGCATCGACGcc < 1:965117/58‑1 (MQ=255) agTCGCGCTAACCCATTGGGAGTAGTTAAGCCGGGTAGAAATCTAGGGCATCGACGcc > 2:965117/1‑58 (MQ=255) agTCGCGCTAACCCATTGGGAGTAGTTAAGCCGGGTAGAAATCTAGGGCATCGACGCCCAATCTGTTac > 2:667846/1‑69 (MQ=255) agTCGCGCTAACCCATTGGGAGTAGTTAAGCCGGGTAGAAATCTAGGGCATCGACGCCCAATCTGTTac < 1:667846/69‑1 (MQ=255) gcgcTAACCCATTGGGAGTAGTTAAGCCGGGTAGAAATCTAGGGCATCGACGCCCaa > 2:1416678/1‑57 (MQ=255) gcgcTAACCCATTGGGAGTAGTTAAGCCGGGTAGAAATCTAGGGCATCGACGCCCaa < 1:1416678/57‑1 (MQ=255) cgcTAACCCATTGGGAGTAGTTAAGCCGGGTAGAAATCTAGGGCATCGACGCCCAATCTGTTACACTTCTGGAACAATTTTTTGATGAGCAGGCATTGAGATGGTGGATAAGTCACAAGAAACGACGCACTTTGGtttt > 1:813908/1‑139 (MQ=255) cTAACCCATTGGGAGTAGTTAAGCCGGGTAGAAATCTAGGGCATCGACGCCCAATCTGTTACACTTCTGGAACAATTTTTTGATGAGCa < 2:129952/89‑1 (MQ=255) | ACGCGAGATTAATCCGGATTTGGCTGAACAGGCGGTGAGCCAGGATGAAGAGTATCGACTTCGGTCGGTTCCGGAGCAGCCGAATGATGAAGCTTATCAACGCGATG‑ATGAATATAATCAGCAGTCGCGCTAGCCCATTGGGAGTAGTTAAGCCGGGTAGAAATCTAGGGCATCGACGCCCAATCTGTTACACTTCTGGAACAATTTTTTGATGAGCAGGCATTGAGATGGTGGATAAGTCACAAGAAACGACGCACTTTGGTTTT > NC_000913/4018628‑4018893 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |