| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,769,478 | (G)7→9 | coding (405/1113 nt) | ydiK → | UPF0118 family inner membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,769,471 | 1 | . | G | 95.8% | 75.6 / ‑3.1 | 24 | coding (398/1113 nt) | ydiK | UPF0118 family inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base G (15/8); total (15/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.75e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.93e-01 | |||||||||||
| * | NC_000913 | 1,769,471 | 2 | . | G | 91.7% | 76.5 / 0.4 | 24 | coding (398/1113 nt) | ydiK | UPF0118 family inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base . (1/1); new base G (14/8); total (15/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.34e-01 | |||||||||||
TATCGTCGACGGCAGCGGCCCGCTAATTAAAGCCATTTCCAGCGGTGACATGACGTTACCCGATCTGGCGTGGCTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTG‑CTGG‑ATAT‑‑GGGGGGGAC‑GGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCTTTATGGTGCATTGTGCGCTGATGCTTCTCTTCAGTGCCCT > NC_000913/1769337‑1769600 || tATCGTCGACGGCAGCGGCCCGCTAATTAAAGCCATTTCCAGCGGTGACATGACGTTACCCGATCTGGCGTGGCTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTG‑CTGG‑ATAT‑‑gggg < 2:525801/139‑1 (MQ=255) tcgtcgACGGCAGCGGCCCGCTAATTAAAGCCATTTCCAGCGGTGACATGACGTTACCCGATCTGGCGTGGCTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTG‑CTGG‑ATAT‑‑gggggg > 1:648859/1‑139 (MQ=255) tttCCAGCGGTGACATGACGTTACCCGATCTGGCGTGGCTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTG‑CTGG‑ATATGGGGGGGGGAC‑GGCGATCATGGCGAAAGTCCGCCCTtat > 2:661817/1‑139 (MQ=255) tttCCAGCGGTGACATGACGTTACCCGATCTGGCGTGGCTTAATACCACTGCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTG‑CTGG‑ATATGGGGGGGGGAC‑GGCGATCATGGCGAAAGTCCGCCCTtat > 2:1169404/1‑139 (MQ=255) cGGTGACATGACGTTACCCGATCTGGCGTGGCTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTG‑CTGG‑ATATGGGGGGGGGAC‑GGCGATCATGGCGAAAGTCCGCCCTTATATTGGca < 2:648859/139‑1 (MQ=255) cGGTGACATGACGTTACCCGATCTGGCGTGGCTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTG‑CTGG‑ATATGGGGGGGGGAC‑GGCGATCATGGCGAAAGTCCGCCCTTATATTGGca > 2:513900/1‑139 (MQ=255) ggATCTTGCCTGGCTTAATACCATTCCGGGTATTGGCGCGAAGCTGTAAGCAAGCTGGCACAACCTGCCTGGAATGG‑‑GGGGGGGAC‑GGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACGACCACCTGGTTCg < 2:881492/138‑1 (MQ=255) gCTTAATACTATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTG‑CTGG‑ATATG‑GGGGGGGGCGGGCGTTCTTGGCGAAAGTCCGCCCTTATTTTGGCACCACCACAACCTGGTTCGTTGGACAggccc > 1:881492/1‑137 (MQ=255) aTTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTG‑CTGG‑ATAT‑‑ggg < 2:697938/56‑1 (MQ=255) aTTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTG‑CTGG‑ATAT‑‑ggg > 1:697938/1‑56 (MQ=255) ttCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTG‑CTGG‑ATATGGGGGGGGGAC‑GGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCggg > 2:1217580/1‑139 (MQ=255) tGGCGCGAAGCTGTATGCAGGCTGGCACAACTTG‑CTGG‑ATATGGGGGGGGGAC‑GGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCTTTATgg > 2:936346/1‑139 (MQ=255) tGTATGCAGGCTGGCACAACTTG‑CTGG‑ATATGGGGGGGGGAC‑GGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCTTTATGGTGCATTGTgcg < 1:1217580/139‑1 (MQ=255) tGCAGGCTGGCACAACTTG‑CTGG‑ATATGGGGGGGGGAC‑GGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCTTTATGGTGCATTGTGCGCTGa < 1:431406/139‑1 (MQ=255) aGGCTGGCACAACTTG‑CTGG‑ATATGGGGGGGGGAC‑GGCGATCATGGCGAAAGTc > 1:956567/1‑54 (MQ=255) aGGCTGGCACAACTTG‑CTGG‑ATATGGGGGGGGGAC‑GGCGATCATGGCGAAAGTc < 2:956567/54‑1 (MQ=255) gCTTGCACAACTTG‑CTGG‑ATATGGGGGGGGGAC‑GGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCTTTATGGTGCATTGTGCGCTGATGCtt < 1:847374/139‑1 (MQ=255) gCTGGCACAACTTG‑CTGG‑ATATGGGGGGGGGAC‑GGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCt > 1:725732/1‑113 (MQ=255) gCTGGCACAACTTG‑CTGG‑ATATGGGGGGGGGAC‑GGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCt < 2:725732/113‑1 (MQ=255) cTGGCACAACTTG‑CTGG‑ATATGGGGGGGGGAC‑GGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCTTTATGGTGCATTGTGCGCTGATGCTtc > 1:1213146/1‑139 (MQ=255) ggCACAACTTG‑CTGG‑ATATGGGGGGGGGAC‑GGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCTTTATGGTGCATTGTGCGCTGATGCTtctc > 2:529216/1‑139 (MQ=255) ggCACAACTTG‑CTGG‑ATATGGGGGGGGGAC‑GGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCTTTATGGTGCATTGTGCGCTGATGCTtctc > 1:289879/1‑139 (MQ=255) cactACTTG‑CTGG‑ATATGGGGGGGGGCC‑GGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCTTATCGGCCGCTTAATGGTGCATTGTGCGCTGATGCTTCTCtt > 2:847374/1‑139 (MQ=255) cacaACTTG‑CTGG‑ATATGGGGGGGGGAC‑GGCGATCATGGCGAAAGTCCGCCCTTATATTGGcaccacc < 1:777333/68‑1 (MQ=255) cacaACTTG‑CTGG‑ATATGGGGGGGGGAC‑GGCGATCATGGCGAAAGTCCGCCCTTATATTGGcaccacc > 2:777333/1‑68 (MQ=255) cTGG‑ATATGGGGGGGGGAC‑GGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAgg < 2:446549/81‑1 (MQ=255) cTGG‑ATATGGGGGGGGGAC‑GGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAgg > 1:446549/1‑81 (MQ=255) cTGG‑ATATGGGGGGGGGAC‑GGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCTTTATGGTGCATTGTGCGCTGATGCTTCTCTTCAGTGCCct > 1:169818/1‑139 (MQ=255) || TATCGTCGACGGCAGCGGCCCGCTAATTAAAGCCATTTCCAGCGGTGACATGACGTTACCCGATCTGGCGTGGCTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTG‑CTGG‑ATAT‑‑GGGGGGGAC‑GGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCTTTATGGTGCATTGTGCGCTGATGCTTCTCTTCAGTGCCCT > NC_000913/1769337‑1769600 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |