| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,769,478 | (G)7→8 | coding (405/1113 nt) | ydiK → | UPF0118 family inner membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,769,471 | 1 | . | G | 97.4% | 129.3 / ‑3.4 | 39 | coding (398/1113 nt) | ydiK | UPF0118 family inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base G (18/20); total (19/20) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.87e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.23e-01 | |||||||||||
TATCGTCGACGGCAGCGGCCCGCTAATTAAAGCCATTTCCAGCGGTGACATGACGTTACCCGATCTGGCGTGGCTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGAT‑AT‑‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCTTTATGGTGCATTGTGCGCTGATGCTTC > NC_000913/1769337‑1769587 | tATCGTCGACGGCAGCGGCCCGCTAATTAAAGCCATTTCCAGCGGTGACATGACGTTACCCGATCTGGCGTGGCTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGAT‑AT‑‑gggg > 2:1377430/1‑139 (MQ=255) tcgtcgACGGCAGCGGCCCGCTAATTAAAGCCATTTCCAGCGGTGACATGACGTTACCCGATCTGGCGTGGCTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGAT‑AT‑‑gggggg < 2:1219944/139‑1 (MQ=255) tcgACGGCAGCGGCCCGCTAATTAAAGCCATTTCCAGCGGTGACATGACGTTACCCGATCTGGCGTGGCTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGAT‑AT‑‑ggggg > 1:26508/1‑135 (MQ=255) tcgACGGCAGCGGCCCGCTAATTAAAGCCATTTCCAGCGGTGACATGACGTTACCCGATCTGGCGTGGCTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGAT‑AT‑‑ggggg < 2:26508/135‑1 (MQ=255) ggCAGCGGCCCGCTAATTAAAGCCATTTCCAGCGGTGACATGACGTTACCCGATCTGGCGTGGCTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGAT‑AT‑‑gggggggg > 2:112273/1‑132 (MQ=255) ggCAGCGGCCCGCTAATTAAAGCCATTTCCAGCGGTGACATGACGTTACCCGATCTGGCGTGGCTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGAT‑AT‑‑gggggggg < 1:112273/133‑2 (MQ=255) aaaGCCATTTCCAGCGGTGACATGACGTTACCCGATCTGGCGTGGCTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGAT‑ATGGGGGGGGGACGGCGATCATGGCGAAAGTCCg < 1:814662/139‑1 (MQ=255) tttCCAGCGGTGACATGACGTTACCCGATCTGGCGTGGCTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGAT‑ATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGccc > 1:612224/1‑134 (MQ=255) tttCCAGCGGTGACATGACGTTACCCGATCTGGCGTGGCTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGAT‑ATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGccc < 2:612224/134‑1 (MQ=255) ttCCAGCGGTGACATGACGTTACCCGATCTGGCGTGGCTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGAT‑ATG‑GGGGGGGACGGCGATCATGGCGAAAGTc < 2:1017031/128‑1 (MQ=255) ttCCAGCGGTGACATGACGTTACCCGATCTGGCGTGGCTTAATACCATTCCGGTGATTGGAGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGAT‑ATG‑GGGGGGGACGGCGATCATGGCGAAAGTc > 1:1017031/1‑128 (MQ=255) tCCAGCGGTGACATGACGTTACCCGATCTGGCGTGGCTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGAT‑ATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATAtt < 1:1377430/139‑1 (MQ=255) aGCGGTGACATGACGTTACCCGATCTGGCGTGGCTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGAT‑ATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGc > 2:664347/1‑139 (MQ=255) gCGGTGACATGACTTTACCCGATCTGGCGTGGCTTAATACCATTCCGGGGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGAT‑ATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGca < 2:1058112/139‑1 (MQ=255) tGACATGACGTTACCCGATCTGGCGTGGCTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGAT‑ATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGcaccac < 1:234189/139‑1 (MQ=255) tGACATGACGTTACCCGATCTGGCGTGGCTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGAT‑ATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGcaccac > 2:412851/1‑139 (MQ=255) aCCCGATCTGGCGTGGCTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGAT‑ATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGtt > 2:341040/1‑139 (MQ=255) cccGATCTGGCGTGGCTTAATACCATTCCGGTGCTTGGCGAGAAGCTGTATGCAGGCTGGCACAACTTGCTGGAT‑AT‑‑ggggggggacagcg < 1:1211948/91‑8 (MQ=255) cccGATCTGGCGTGGCTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGAT‑ATG‑GGGGGGGACGGCg > 2:1211948/1‑91 (MQ=255) tGGCGTGGCTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGAT‑ATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGc < 1:581676/139‑1 (MQ=255) cGTGGCTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGAT‑ATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAgg > 2:1271623/1‑139 (MQ=255) cGTGGCTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGAT‑ATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAgg < 1:95590/139‑1 (MQ=255) cGTGGCTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGAT‑ATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAgg > 2:95590/1‑139 (MQ=255) gCTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGAT‑ATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAggcggc > 2:732724/1‑139 (MQ=255) cTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGATAAG‑‑GGGGGGGACGGCGATCATGGCGAAAGTc > 1:1039145/1‑91 (MQ=255) cTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGAT‑ATG‑GGGGGGGACGGCGATCATGGCGAAAGTc < 2:1039145/91‑1 (MQ=255) cTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGAT‑ATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGgcggcg > 1:1083269/1‑139 (MQ=255) aTACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGAT‑ATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCata > 1:153991/1‑139 (MQ=255) aTTCCGGTGATTGGCGCGAGGCTGTATGCAGGCTGGCACAACTTGCTGGAT‑ATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATAtt > 2:1493592/1‑94 (MQ=255) aTTCCGGTGATTGGCGCGAGGCTGTATGCAGGCTGGCACAACTTGCTGGAT‑ATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATAtt < 1:1493592/94‑1 (MQ=255) ttCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGAT‑ATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGgc > 1:187059/1‑139 (MQ=255) cGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGAT‑ATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCt < 1:664347/139‑1 (MQ=255) cGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGAT‑ATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCt < 2:671191/139‑1 (MQ=255) cGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGAT‑ATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTCGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCt < 2:80096/139‑1 (MQ=255) gTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGAT‑ATG‑GGGGGGGACGGCGATCATGGCGAAAGTc < 2:1412442/76‑1 (MQ=255) gTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGAT‑ATG‑GGGGGGGACGGCGATCATGGCGAAAGTc > 1:1412442/1‑76 (MQ=255) gcgcGAAGCTGTATGCAGGCTGGCACAACTTGCTGGAT‑ATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCTTTATGGTGc > 2:678902/1‑139 (MQ=255) cgcgAAGCTGTATGCAGGCTGGCACAACTTGCTGGAT‑ATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCTTTATGGTGCa < 1:1271623/139‑1 (MQ=255) gTATGCAGGCTGGCACAACTTGCTGGAT‑ATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCTTTATGGTGCATTGTGCGCt < 1:341040/139‑1 (MQ=255) aTGCAGGCTGGCACAACTTGCTGGAT‑ATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCTTTATGGTGCATTGTGCGCTGa < 1:239313/139‑1 (MQ=255) aTGCAGGCTGGCACAACTAGCTGGAT‑ATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCTTTATGGTGCATTGTGCGCTGa < 2:1083269/139‑1 (MQ=255) gCTGGCACAACTTGCTGGAT‑ATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCTTTATGGTGCATTGTGCGCTGATGCTtc > 2:574635/1‑139 (MQ=255) ggCACAACTTGCTGGAT‑ATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGc < 1:579074/88‑1 (MQ=255) ggCACAACTTGCTGGAT‑ATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGc > 2:579074/1‑88 (MQ=255) cacaACTTGCTGGAT‑ATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGcc < 2:557370/50‑1 (MQ=255) cacaACTTGCTGGAT‑ATG‑GGGGGGGACGGCGATCATGGCGAAAGTCCGcc > 1:557370/1‑50 (MQ=255) | TATCGTCGACGGCAGCGGCCCGCTAATTAAAGCCATTTCCAGCGGTGACATGACGTTACCCGATCTGGCGTGGCTTAATACCATTCCGGTGATTGGCGCGAAGCTGTATGCAGGCTGGCACAACTTGCTGGAT‑AT‑‑GGGGGGGACGGCGATCATGGCGAAAGTCCGCCCTTATATTGGCACCACCACCACCTGGTTCGTTGGGCAGGCGGCGCATATCGGGCGCTTTATGGTGCATTGTGCGCTGATGCTTC > NC_000913/1769337‑1769587 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |