| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,767,445 | (C)7→9 | intergenic (+90/‑265) | rnlB → / → yfjP | CP4‑57 prophage, uncharacterized protein/CP4‑57 prophage, 50S ribosome‑binding GTPase family protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,767,438 | 1 | . | C | 83.3% | 116.0 / 16.4 | 42 | intergenic (+83/‑272) | rnlB/yfjP | CP4‑57 prophage, uncharacterized protein/CP4‑57 prophage, 50S ribosome‑binding GTPase family protein |
| Reads supporting (aligned to +/- strand): ref base . (5/2); new base C (14/21); total (19/23) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.14e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.91e-01 | |||||||||||
| * | NC_000913 | 2,767,438 | 2 | . | C | 82.9% | 115.0 / 16.5 | 41 | intergenic (+83/‑272) | rnlB/yfjP | CP4‑57 prophage, uncharacterized protein/CP4‑57 prophage, 50S ribosome‑binding GTPase family protein |
| Reads supporting (aligned to +/- strand): ref base . (5/2); new base C (13/21); total (18/23) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.09e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TCTGTTTTGTCTCCCGATGATGTACGCCAAGTCCTGTCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑‑CC‑C‑C‑‑CC‑‑C‑‑T‑‑CACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTTCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTGGAAATCCTATGATGCCTTTCCCG > NC_000913/2767305‑2767563 || tctGTTTTGTCTCCCGATGATGTACGCCAAGTCCTGTCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑Aa‑‑cc‑a‑c‑‑c > 2:538825/1‑139 (MQ=255) ctGTTTTGTCTCCCGATGATGTACGCCAAGTCCTGTCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑‑cc‑c‑c‑‑cc > 1:1182665/1‑139 (MQ=255) ctGTTTTGTCTCCCGATGATGTACGCCAAGTCCTGTCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑‑ac‑c‑c‑‑cc > 2:1457008/1‑139 (MQ=255) ttttGTCTCCCGATGATGTACGCCAAGTCCTGTCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑‑cc‑c‑c‑‑cc‑‑ccc < 2:1182665/139‑3 (MQ=255) ttttGTCTCCCGATGATGTACGCCAAGTCCTGTCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑‑cc‑c‑c‑‑cc‑‑ccc > 2:1303059/1‑137 (MQ=255) ttttGTCTCCCGATGATGTACGCCAAGTCCTGTCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑‑cc‑c‑c‑‑cc‑‑ccc < 2:1417033/139‑3 (MQ=255) tGTCTCCCGATGATGTACGCCAAGTCCTGTCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑‑CC‑C‑C‑‑CC‑‑C‑‑T‑‑caca < 2:1220730/139‑1 (MQ=255) tctcCCGATGATGTACGCCAAGTCCTGTCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑‑cc‑c‑c‑‑cc‑‑ccctcaca < 1:1278360/139‑8 (MQ=255) cccGATGATGTACGCCAAGTCCTGTCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCACGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACCCC‑C‑C‑‑CC‑‑C‑‑T‑‑CACAACg > 2:166299/1‑139 (MQ=255) cGATGATGTACGCCAAGTCCTGTCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACCCC‑C‑C‑‑CC‑‑C‑‑T‑‑CACAACGTc > 1:1391263/1‑139 (MQ=255) gTACGCCAAGTCCTGTCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACCCC‑C‑C‑‑CC‑‑C‑‑T‑‑CACAACGTCCTGCATa < 2:1329542/139‑1 (MQ=255) gTACGCCAAGTCCTGTCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑‑cc‑c‑c‑‑c < 2:589466/118‑1 (MQ=255) gTACGCCAAGTCCTGTCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑‑cc‑c‑c‑‑c > 1:589466/1‑118 (MQ=255) aCGCCAAGTCCTGTCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACCCC‑C‑C‑‑CC‑‑C‑‑T‑‑CACAACGt > 2:307983/1‑129 (MQ=255) aCGCCAAGTCCTGTCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACCCC‑C‑C‑‑CC‑‑C‑‑T‑‑CACAACGt < 1:307983/129‑1 (MQ=255) cGCCAAGTCCTGTCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑‑cc‑c‑c < 2:232935/114‑1 (MQ=255) cGCCAAGTCCTGTCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑‑cc‑c‑c > 1:232935/1‑114 (MQ=255) cAAGTCCTGTCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACCCC‑C‑C‑‑CC‑‑C‑‑T‑‑CACAACGTCCTGCATAGGGAac < 1:1303059/139‑1 (MQ=255) cAAGTCCTGTCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACCCC‑C‑C‑‑CC‑‑C‑‑T‑‑CACAACGTCCTGCATAGGGAac < 1:620359/139‑1 (MQ=255) gTCCTGTCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑‑cc‑c‑c‑‑cc‑‑ccctcaca < 2:957870/118‑8 (MQ=255) gTCCTGTCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑‑cc‑c‑c‑‑cc‑‑ccctcaca > 1:957870/1‑111 (MQ=255) gTCCTGTCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑‑cc‑c‑c‑‑cc < 1:898449/110‑1 (MQ=255) gTCCTGTCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑‑cc‑c‑c‑‑cc > 2:898449/1‑110 (MQ=255) gTCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑‑CCAC‑C‑‑CCA‑C‑‑T‑‑CAAATCGTCTTGCATAGGGTACACGTTTTc > 1:1431920/1‑139 (MQ=255) ggATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACCCC‑C‑C‑‑CC‑‑C‑‑T‑‑CACAACGt < 1:679133/111‑1 (MQ=255) ggATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACCCC‑C‑C‑‑CC‑‑C‑‑T‑‑CACAACGt > 2:679133/1‑111 (MQ=255) ggATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACCCC‑C‑C‑‑CC‑‑C‑‑T‑‑CACAACGTCCTGCATAGGGAACACGTTTTccc > 2:189758/1‑135 (MQ=255) ggATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACCCC‑C‑C‑‑CC‑‑C‑‑T‑‑CACAACGTCCTGCATAGGGAACACGTTTTccc < 1:189758/135‑1 (MQ=255) ctctTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCACGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACCCC‑C‑C‑‑CC‑‑C‑‑T‑‑CACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACt < 1:166299/139‑1 (MQ=255) ctAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACCCC‑C‑C‑‑CC‑‑C‑‑T‑‑CACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTTccc < 1:1188348/139‑1 (MQ=255) aggTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACCCC‑C‑C‑‑CC‑‑C‑‑T‑‑CACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTTCCCCCCCTTTaaa < 2:688549/137‑1 (MQ=255) gCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATTAAA‑‑CC‑CAC‑‑CC‑‑C‑‑T‑‑CACAACGTCACGCATAGGGAACACGATTTACCTTGTGCACCCACCACTAAATTTCCCCCCCTCAAAACGTCCCATTTATg > 1:515637/1‑139 (MQ=255) gCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACCCC‑C‑C‑‑CC‑‑C‑‑T‑‑CCCAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTTtcc > 1:861358/1‑116 (MQ=255) gCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACCCC‑C‑C‑‑CC‑‑C‑‑T‑‑CACAACGTc < 2:861049/68‑1 (MQ=255) gCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACCCC‑C‑C‑‑CC‑‑C‑‑T‑‑CACAACGTc > 1:1194319/1‑68 (MQ=255) gCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACCCC‑C‑C‑‑CC‑‑C‑‑T‑‑CACAACGTc < 2:1194319/68‑1 (MQ=255) gCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACCCC‑C‑C‑‑CC‑‑C‑‑T‑‑CACAACGTc > 1:861049/1‑68 (MQ=255) gCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACCCC‑C‑C‑‑CC‑‑C‑‑T‑‑CACAACGTCCTGCATAGGGAACACGttt < 1:1561684/87‑1 (MQ=255) gCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACCCC‑C‑C‑‑CC‑‑C‑‑T‑‑CACAACGTCCTGCATAGGGAACACGttt > 2:1561684/1‑87 (MQ=255) gCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACCCC‑C‑C‑‑CC‑‑C‑‑T‑‑CACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCAcc > 1:312641/1‑100 (MQ=255) gCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACCCC‑C‑C‑‑CC‑‑C‑‑T‑‑CACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCAcc < 2:312641/100‑1 (MQ=255) gCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACCCC‑C‑C‑‑CC‑‑C‑‑T‑‑CACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTTccc < 2:861358/116‑1 (MQ=255) gCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑‑TC‑C‑C‑‑CCAGT‑‑T‑‑CCCAACTCCCTGCCTAGGCAACAAGTGTTTCCCTGTGCTCCCAAGACAAAATTTCCCCCCCTTTCACCTTCTCAATAATg > 2:184506/1‑139 (MQ=255) gCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑‑CC‑C‑C‑‑CC‑‑C‑‑TTCCATAACGTACTCCTTAGTGAAAACGGTTTCCACTGTCCACCCACGCCTAAATTCCCCCCCCTTTCAACTCCTCcataata > 1:859514/1‑138 (MQ=255) ccTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑‑cc‑c‑c‑‑cc > 1:236859/1‑53 (MQ=255) ccTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑‑cc‑c‑c‑‑cc < 2:236859/53‑1 (MQ=255) tGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACCCC‑C‑C‑‑CC‑‑C‑‑T‑‑CACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTTCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTc < 2:859514/139‑1 (MQ=255) atTAACTTGTCCAATATGATCAAATAGCATT‑AA‑‑CC‑C‑C‑‑CC‑‑CCTT‑‑CACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTTCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTGGa < 1:184506/139‑1 (MQ=255) tAACTTGTCCAATATGATCAAATAGCATT‑AACCCC‑C‑C‑‑CC‑‑C‑‑T‑‑CACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTTCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTGGaaa < 2:1191681/139‑1 (MQ=255) tCCAATATGATCAAATAGCATT‑AACCCC‑C‑C‑‑CC‑‑C‑‑T‑‑CACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCAcc < 1:1456403/75‑1 (MQ=255) tCCAATATGATCAAATAGCATT‑AACCCC‑C‑C‑‑CC‑‑C‑‑T‑‑CACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCAcc > 2:1456403/1‑75 (MQ=255) tCCAATATGATCAAATAGCATT‑AACCCC‑C‑C‑‑CC‑‑C‑‑T‑‑CACAACGACGTGCATAGGGAACACGTTTTCCCCTCTGCACCCACGACTAGATTTCCCCCCC‑TTAAACTTCTCAATAATGTCACCAATTTTCTCGAAATACTatga > 2:836839/1‑139 (MQ=255) tCCAATATGATCAAATAGCATT‑AACCCC‑C‑C‑‑CC‑‑C‑‑C‑‑CCCAACGTCCTGCATAGAGAAAACGTTTTCCACCGTCCACCCACGACTAAACATCCCACCCTTCTCCCTCCCCACTAATCTCACCAATTTCCTGGCAATCCTatt > 1:621266/1‑138 (MQ=255) tCCAATATGATCAAATAGCATT‑AACCCC‑C‑C‑‑CC‑‑C‑‑A‑‑CACAACGTCCTCCATAGGGAAAAACTTTTACCCCGAGCACCCAAGACTAAAATTCACCCCCCTTAAACCTTTCAAAAATGACAACAATTTTTAGGCAAACCTata > 1:1281577/1‑138 (MQ=255) tCCAATATGATCAAATAGCATT‑AA‑‑CC‑C‑CCACC‑‑C‑‑T‑‑AACAACATCCAGCATAAGGAACACGATATTCTCTGGGCAACCACGACCAAATTTGACCCCCTTCGAAATTCGCAATAATATAACCAACTTTCGGGAAATACTata > 1:997578/1‑138 (MQ=255) actattatCAAATAGCATT‑AACCCC‑C‑C‑‑CC‑‑C‑‑T‑‑CACCACCTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTTCCCCCCCTTTCAACTTCTCACTAATGTCACCAATTTTCTGGAAATCCTatgatg < 1:538825/137‑1 (MQ=255) tatGATCAAATAGCATT‑AACCCC‑C‑C‑‑CC‑‑C‑‑T‑‑CAAAACGTCCTGCTTAGGGCACACGTTTTCCCCTGTGCACCCACGACTCAATTTCCCCCCCCTTAAACTTCTCAATAATGTCCCCCATTTTCTGGAAATCCAATGATGcc > 1:109959/1‑139 (MQ=255) aTCAAATAGCATT‑AACCCC‑C‑C‑‑CC‑‑C‑‑T‑‑CACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTTCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTGGAAATCCTATGATGCCTTTc < 2:621266/139‑1 (MQ=255) cAAATAGCAGT‑AACCCC‑C‑C‑‑CC‑‑C‑‑T‑‑CACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTT‑CCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTGGAAATCCTATGATGCCTTTCCCg < 1:836839/139‑1 (MQ=255) aaaTATCATT‑AACCCC‑C‑C‑‑CC‑‑C‑‑T‑‑CACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTTCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTGGAAATCCTATGATGCCTTTCCCg < 1:1457008/139‑1 (MQ=255) || TCTGTTTTGTCTCCCGATGATGTACGCCAAGTCCTGTCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑‑CC‑C‑C‑‑CC‑‑C‑‑T‑‑CACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTTCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTGGAAATCCTATGATGCCTTTCCCG > NC_000913/2767305‑2767563 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |