Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,609,336 (C)7→8 intergenic (+13/‑78) yjjG → / → prfC dUMP phosphatase/peptide chain release factor RF‑3

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,609,3291.C92.6% 172.7 / 5.8 55intergenic (+6/‑85)yjjG/prfCdUMP phosphatase/peptide chain release factor RF‑3
Reads supporting (aligned to +/- strand):  ref base . (2/2);  new base C (27/23);  total (30/25)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.88e-01

TCGGTGGCATCAACGCCGGGCTTGCGACCTGCTGGCTGAATGCACACCATCGCGAGCAACCAGAAGGCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCT‑‑C‑CCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAAGAAGAAAGAATTATGACGTTGTCTCCTTATTTGCAAGAGGTGGCGAAGCGCCGCACTTTT  >  NC_000913/4609193‑4609461
                                                                                                                                          |                                                                                                                                      
tcGGTGGCATCAACGCCGGGCTTGCGACCTGCTGGCTGAATGCACACCATCGCGAGCAACCAGAAGGCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCT‑‑c‑c                                                                                                                                    >  1:626810/1‑139 (MQ=255)
          cAACGCCGGGCTTGCGAGCTGCTGGCTGAATGCACACCATCGGGAGCTACCAGAAGGCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCTTGTGTAAACACTGATTG‑CAT‑‑c‑cccccccgttg                                                                                                                          <  1:878810/139‑6 (MQ=255)
          cAACGCCGGGCTTGCGACCTGCTGGCTGAATGCACACCATCGCGAGCAACCAGAAGGCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCT‑‑c‑cccccccgttg                                                                                                                          <  2:334090/139‑6 (MQ=255)
          cAACGCCGGGCTTGCGACCTGCTGGCTGAATGCACACCATCGCGAGCAACCAGAAGGCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCT‑‑c‑cccccccgttg                                                                                                                          <  2:1430734/139‑6 (MQ=255)
                cGGGCTTGCGACCTGCTGGCTGAATGCACACCATCGCGAGCAACCAGAAGGCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCTC‑C‑CCCCCCGTTGATGGGt                                                                                                                     >  1:284990/1‑139 (MQ=255)
                  ggCTTGCGACCTGCTGGCTGAATGCACACCATCGCTAGCAACCAGAAGGCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCTC‑C‑CCCCCCGTTGATGGGTaa                                                                                                                   >  1:1599228/1‑139 (MQ=255)
                                  gctgAATGCACACCATCGCGAGCAACCAGAAGGCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCTC‑C‑CCCCCCGTTGATGGGTAAAATAGCCGCAAttttt                                                                                                   <  2:1599228/139‑1 (MQ=255)
                                            cacCATCGCGAGCAACCAGAAGGCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCT‑‑c‑cccccccg                                                                                                                             <  1:618601/102‑3 (MQ=255)
                                            cacCATCGCGAGCAACCAGAAGGCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCT‑‑c‑cccccccg                                                                                                                             >  2:618601/1‑100 (MQ=255)
                                                aTCGCGAGCAACCAGAAGGCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCTC‑C‑CCCCCCGTTGATGGTTAAAATAGCGGCAATTTTTCGTTTTAAACAAgg                                                                                     >  1:820450/1‑138 (MQ=255)
                                                aTCGCGAGCAACCAGAAGGCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCTC‑C‑CCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAgc                                                                                     >  1:631920/1‑139 (MQ=255)
                                                aTCGCGAGCAACCAGAAGGCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCTC‑C‑CCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAgc                                                                                     >  1:1576976/1‑139 (MQ=255)
                                                aTCGCGAGCAACCAGAAGGCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCTA‑C‑CCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAgc                                                                                     >  1:978984/1‑139 (MQ=255)
                                                aTCGCGAGCAACCAGAAGGCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCT‑‑CTCCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAgc                                                                                     >  2:568678/1‑139 (MQ=255)
                                                      aGCAACCAGAAGGCATCGCGCCCACCTGGACC‑TTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCTCCC‑CCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAgcgcggcg                                                                               >  1:215492/1‑139 (MQ=255)
                                                       gCAACCAGAAGGCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCTC‑C‑CCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAgcgcggcgc                                                                              >  2:1531836/1‑139 (MQ=255)
                                                              gAAGGCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCTC‑C‑CCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCg                                                                       <  1:1300808/139‑1 (MQ=255)
                                                                aGGCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCTC‑C‑CCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCt                                                                     >  2:693919/1‑139 (MQ=255)
                                                                      cgcgCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCTC‑C‑CCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCa                                                               >  1:12035/1‑139 (MQ=255)
                                                                      cgcgCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCTC‑C‑CCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCa                                                               <  2:786391/139‑1 (MQ=255)
                                                                      cgcgCCCACCTGGACCGTTTCTTCGTTGCACGAACTGG‑‑‑AGCTCCTGTGTAAACACTGATTG‑CCTC‑C‑CCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCaaga                                                            >  2:554370/1‑139 (MQ=255)
                                                                            cACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTGCCCC‑‑C‑CCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAagaaga                                                         >  2:1388606/1‑139 (MQ=255)
                                                                            cACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCTC‑C‑CCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATTCCGCTTACTCAagaaga                                                         >  1:837438/1‑139 (MQ=255)
                                                                            cACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCT‑‑c‑cccccccg                                                                                                                             <  1:602055/70‑3 (MQ=255)
                                                                            cACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCT‑‑c‑cccccccg                                                                                                                             >  2:602055/1‑68 (MQ=255)
                                                                            cACCTGGACCGTTTCTTCGTTGCACGAACTGG‑‑‑AGCTCCTGTGTAAACACTGATTG‑CCTC‑C‑CCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAAGaagaaag                                                      <  1:554370/139‑1 (MQ=255)
                                                                               cTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCTC‑C‑CCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAAGaagaaag                                                      <  2:12035/139‑1 (MQ=255)
                                                                                  ggacctttCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCTCCC‑CCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAAGAagaaagaa                                                    <  2:215492/134‑1 (MQ=255)
                                                                                   aCCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCTC‑C‑CCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAAGAAGAAAGAAtt                                                  >  2:804027/1‑139 (MQ=255)
                                                                                       tttCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCt                                                                                                                                         >  2:1547410/1‑50 (MQ=255)
                                                                                       tttCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCt                                                                                                                                         <  1:1547410/50‑1 (MQ=255)
                                                                                       tttCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCTC‑C‑CCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAAGAAGAAAGAATTATGa                                              >  1:1397500/1‑139 (MQ=255)
                                                                                       tttCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCTC‑C‑CCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAAGAAGAAAGAATTATGa                                              >  1:335648/1‑139 (MQ=255)
                                                                                       tttCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCT‑‑c‑cccccccgttg                                                                                                                          >  1:1578826/1‑57 (MQ=255)
                                                                                       tttCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCT‑‑c‑cccccccgttg                                                                                                                          >  2:234356/1‑57 (MQ=255)
                                                                                       tttCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCT‑‑c‑cccccccgttg                                                                                                                          <  1:234356/62‑6 (MQ=255)
                                                                                       tttCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCT‑‑c‑cccccccgttg                                                                                                                          <  2:1578826/62‑6 (MQ=255)
                                                                                        ttcttcGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCTCCC‑CCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAAGAAGAAAGAATTATGa                                              >  1:1530145/1‑139 (MQ=255)
                                                                                         tcttcGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCTC‑C‑CCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACCAGCGCGGCGCGATGCCGCTTACTTAAGAAGAAAGAATTATTACg                                            >  1:1322506/1‑139 (MQ=255)
                                                                                         tcttcGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCT‑‑CTCCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAAGAAGAAAGAATTATGACg                                            <  1:568678/139‑1 (MQ=255)
                                                                                                 gCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCTC‑C‑CCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAAGAAGAAAGAATTATGACGTTGTCTcc                                    <  2:626810/139‑1 (MQ=255)
                                                                                                  cACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCTC‑C‑CCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAAGAAGAAAGAATTATGACGTTGTCTCCt                                   >  2:441331/1‑139 (MQ=255)
                                                                                                    cGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCTC‑C‑CCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAAGAAGAAAGAATTATGACGTTGtc                                       <  2:998520/133‑1 (MQ=255)
                                                                                                    cGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCTC‑C‑CCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAAGAAGAAAGAATTATGACGTTGtc                                       >  1:998520/1‑133 (MQ=255)
                                                                                                    cGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCTC‑C‑CCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAAGAAGAAAGAATTATGACGTTGTCTCCTTa                                 <  1:441331/139‑1 (MQ=255)
                                                                                                    cGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCTC‑C‑CCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAAGAAGAAAGAATTATGACGTTGTCTCCTTa                                 <  1:804027/139‑1 (MQ=255)
                                                                                                     gAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCTC‑C‑CCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAAGAAGAAAGAATTATGACGTTGTCTCCTTAt                                <  1:1531836/139‑1 (MQ=255)
                                                                                                       aCTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCTC‑C‑CCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAAGAAGAAAGAATTa                                                 >  2:793743/1‑120 (MQ=255)
                                                                                                       aCTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCTC‑C‑CCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAAGAAGAAAGAATTa                                                 <  1:793743/120‑1 (MQ=255)
                                                                                                          ggAGCAGCTCCTGTGTAAACACTGATTG‑CCTCCC‑CCCCCCGTTGATGGGTAAAATAACCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCaa                                                              >  2:1214339/1‑105 (MQ=255)
                                                                                                          ggAGCAGCTCCTGTGTAAACACTGATTG‑CCTC‑C‑CCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAAGAAGAAAGAATTATGACGTTGTCTCCTTATTTGCa                           <  2:335648/139‑1 (MQ=255)
                                                                                                          ggAGCAGCTCCTGTGTAAACACGGATTG‑CCTCCC‑CCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCaa                                                              <  1:1214339/105‑1 (MQ=255)
                                                                                                                 cTCCTGTGTAAACACTGATTG‑CCTC‑C‑CCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGAt                                                                           >  1:264941/1‑84 (MQ=255)
                                                                                                                 cTCCTGTGTAAACACTGATTG‑CCTC‑C‑CCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGAt                                                                           <  2:264941/84‑1 (MQ=255)
                                                                                                                 cTCCTGTGTAAACACTGATTG‑CCTC‑C‑CCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAagaaga                                                         >  2:1250240/1‑102 (MQ=255)
                                                                                                                 cTCCTGTGTAAACACTGATTG‑CCTC‑C‑CCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAagaaga                                                         <  1:1250240/102‑1 (MQ=255)
                                                                                                                   ccTGTGTAAACACTGATTG‑CCTC‑C‑CCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAAGAAGAAAGAATTATGACGTTGTCTCCTTATTTGCAAGAGGTGGc                  >  1:1395039/1‑139 (MQ=255)
                                                                                                                      gtgtAAACACTGATTG‑CCTC‑C‑CCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAAGAAGAAAGAATTATGACGTTGTCTCCTTATTTGCAAGAGGTGGCGaa               <  2:1395039/139‑1 (MQ=255)
                                                                                                                       tgtAAACACTGATTG‑CCTC‑C‑CCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAAGAAGAAAGAATTATGACGTTGTCTCCTTATTTGCAAGAGGTGGCGAAg              >  1:1187593/1‑139 (MQ=255)
                                                                                                                             cacTGATTGCCCC‑‑C‑CCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAAGAAGAAAGAATTATGACGTTGTCTCCTTATTTGCAAGAGGTGGCGAAGcgccgc        <  1:1388606/139‑1 (MQ=255)
                                                                                                                              acTGATTG‑CCTC‑C‑CCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAAGAAGAAAGAATTATGACGTTGTCTcc                                    <  2:387217/110‑1 (MQ=255)
                                                                                                                              acTGATTG‑CCTC‑C‑CCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAAGAAGAAAGAATTATGACGTTGTCTcc                                    >  1:387217/1‑110 (MQ=255)
                                                                                                                              acTGATTG‑CCTC‑C‑CCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAAGAAGAAAGAATTATGACGTTGTCTCCTTATTTGCAAGAGGTGGCGAAGCGCCGCa       <  2:1322506/139‑1 (MQ=255)
                                                                                                                                 gATTG‑CCTC‑C‑CCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAAGAAGAAAGAATTAt                                                <  2:219920/95‑1 (MQ=255)
                                                                                                                                 gATTG‑CCTC‑C‑CCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAAGAAGAAAGAATTAt                                                >  1:219920/1‑95 (MQ=255)
                                                                                                                                 gATTG‑CCTC‑C‑CCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAAGAAGAAAGAATTATGACGTTGTCTcc                                    >  2:1487936/1‑107 (MQ=255)
                                                                                                                                 gATTG‑CCTC‑C‑CCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAAGAAGAAAGAATTATGACGTTGTCTcc                                    <  1:1487936/107‑1 (MQ=255)
                                                                                                                                  aTTG‑CCTC‑C‑CCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAAGAAGAAAGAATTATGACGTTGTCTCCTTATTTGCAAGAGGTGGCGAAGCGCCGCACttt   <  2:1576976/139‑1 (MQ=255)
                                                                                                                                   ttG‑CCTC‑C‑CCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAAGAAGAAAGAATTATGACGTTGTCTCCTTATTTGCAAGAGGTGGCGAAGCGCCGCACtttt  <  2:1397500/139‑1 (MQ=255)
                                                                                                                                          |                                                                                                                                      
TCGGTGGCATCAACGCCGGGCTTGCGACCTGCTGGCTGAATGCACACCATCGCGAGCAACCAGAAGGCATCGCGCCCACCTGGACCGTTTCTTCGTTGCACGAACTGGAGCAGCTCCTGTGTAAACACTGATTG‑CCT‑‑C‑CCCCCCGTTGATGGGTAAAATAGCCGCAATTTTTCGTTTTCAACAAGCGCGGCGCGATGCCGCTTACTCAAGAAGAAAGAATTATGACGTTGTCTCCTTATTTGCAAGAGGTGGCGAAGCGCCGCACTTTT  >  NC_000913/4609193‑4609461

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑