New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 132314770 (1.010)21 (0.300) 11/218 4.0 37.5% intergenic (‑65/‑73) trpL/yciV trp operon leader peptide/PHP domain protein
?NC_000913 = 3742633 0 (0.000)intergenic (‑101/‑100) yiaJ/yiaK transcriptional repressor for the yiaKLMNO‑lyxK‑sgbHUE operon/2,3‑diketo‑L‑gulonate reductase, NADH‑dependent
Rejected: Coverage evenness skew score above cutoff.

GTTAACTAGTTCGATGATTAATTGTCAACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1323117‑1323147
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATTGATGAATTTCAAAAGACATAAAAATCAATTGGTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGCTACCATCAGGACGCGACAAAATGGGGAAAGAAGTGATGGGAAAAAAAGAGAACG  <  NC_000913/3742633‑3742499
                                                                                                                                                                      
atatactatgcCGATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGCTACCATCAGGACGCGACAAAATGGGGAA                            >  2:332261/12‑139
       atgcCGATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGCTACCATCAGGACGCGACAAAATGGGGAAAGAAGTG                     >  1:1210093/5‑139
       atgcCGATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACT                                                              >  1:756774/5‑98
       atgcCGATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACT                                                              <  2:756774/94‑1
       atgcCGATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCG                                                                                    <  1:661158/72‑1
       atgcCGATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCG                                                                                    >  2:661158/5‑76
        tgcCGATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGTGCTACCATCAGGACGCGACAAAATGGGGAAAGAAGTGA                    >  2:1455125/4‑139
           CGATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGCTACCATCAGGACGCGACAAAATGGGGAAAGAAGTGATGG                 >  1:633849/1‑139
             ATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGCTACCATCAGGACGCGACAAAATGGGGAAAGAAGTGATGGGA               >  1:1487360/1‑139
             ATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCG                                                                              <  2:1329531/76‑1
             ATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCG                                                                              >  1:1329531/1‑76
             ATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATT                                                                                            >  1:1181475/1‑62
             ATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATT                                                                                            <  2:1181475/62‑1
               GATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGCTACCATCAGGACGCGACAAAATGGGGAAAGAAGTGATGGGAAA             <  2:1487360/139‑1
                ATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGCTACCATCAGGACGCGACAAAATGGGGAAAGAAGTGATGGGAAAA            >  2:1456225/1‑139
                 TTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGCTACCATCAGGACGCGACAAAATGGGGAAAGAAGTGATGGGAAAAA           <  1:9103/139‑1
                     TTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCGATT‑GTTATAACTTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGCTACCATCAGGGCGCGACAAAACGGGGAAATGAGGGATTGGAAAAAAAGA       >  1:938072/1‑139
                          AACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGCTACCATCAGGACGCGACAAAATGGGGAAAGAAGTGATGGGAAAAAAAGAGAACG  >  1:753001/1‑139
                          AACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGCTACCATCAGGACGCGACAAAATGGGGAAAGAAGTGATGGGAAAAAAAGAGAACG  >  2:781991/1‑139
                          AACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGCTACCATCAGGACGCGACAAAATGGGGAAAGAAGTGATGGGAA              <  2:1395493/127‑1
                          AACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGCTACCATCAGGACGCGACAAAATGGGGAAAGAAGTGATGGGAA              >  1:1395493/1‑127
                                                                                                                                                                      
GTTAACTAGTTCGATGATTAATTGTCAACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1323117‑1323147
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATTGATGAATTTCAAAAGACATAAAAATCAATTGGTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGCTACCATCAGGACGCGACAAAATGGGGAAAGAAGTGATGGGAAAAAAAGAGAACG  <  NC_000913/3742633‑3742499

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.