Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913566,1730CG62.1% 136.6 / 194.7 133pseudogene (204/279 nt)exoDpseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related
Reads supporting (aligned to +/- strand):  ref base C (21/29);  new base G (40/42);  total (62/71)
Fisher's exact test for biased strand distribution p-value = 4.76e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.14e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 137 total aligned reads displayed.

CCGCAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTAC  >  NC_000913/566043‑566302
                                                                                                                                  |                                                                                                                                  
          ggCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGcc                                                                                                                  <  1:202258/139‑1 (MQ=255)
              tGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGt                                                                                                              <  1:306663/139‑1 (MQ=255)
                ccGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTAc                                                                                                            >  1:683209/1‑139 (MQ=255)
                 agtgattgcgcctACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACt                                                                                                           >  2:1281087/13‑139 (MQ=255)
                   tgattgcgcctACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACttt                                                                                                         >  1:148672/11‑139 (MQ=255)
                     attgcgcctACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAAc                                                                                                                       <  2:1216298/115‑1 (MQ=255)
                     attgcgcctACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAAc                                                                                                                       >  1:1216298/9‑123 (MQ=255)
                           ggTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCg                                                                                                <  2:111254/139‑1 (MQ=255)
                           cctACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAAc                                                                                                                       >  2:1045155/3‑117 (MQ=255)
                           cctACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCACCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCg                                                                                                >  1:225400/3‑139 (MQ=255)
                           cctACCCGGATATTATCGTGACGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAAc                                                                                                                       <  1:1045155/115‑1 (MQ=255)
                             tACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCt                                                                                              <  2:1611696/139‑1 (MQ=255)
                             tACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCaaaa                                                                                                                        <  1:977735/114‑1 (MQ=255)
                             tACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCaaaa                                                                                                                        >  2:977735/1‑114 (MQ=255)
                              aCCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CAt                                                                                                    >  2:1458630/1‑132 (MQ=255)
                              aCCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCGCTc                                                                                             <  2:683209/139‑1 (MQ=255)
                              aCCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCGCTc                                                                                             <  2:518840/139‑1 (MQ=255)
                               cccGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCa                                                                                            >  2:119543/1‑139 (MQ=255)
                               cccGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCGCTCa                                                                                            >  2:472412/1‑139 (MQ=255)
                                 cGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCGCTCAAt                                                                                          <  2:283346/139‑1 (MQ=255)
                                  ggATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATc                                                                                         <  2:1421328/139‑1 (MQ=255)
                                   gATATTATCGTGAGGATGCGTCATAGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCGCTCAATCa                                                                                        <  2:899473/139‑1 (MQ=255)
                                        tatCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACa                                                                                   >  1:162334/1‑139 (MQ=255)
                                        tatCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCGCTCAATCACGACa                                                                                   <  1:472412/139‑1 (MQ=255)
                                         atCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCa                                                                                        <  2:135525/133‑1 (MQ=255)
                                         atCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCa                                                                                        >  1:135525/1‑133 (MQ=255)
                                             tGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACATAATg                                                                              <  1:614207/139‑1 (MQ=255)
                                             tGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCg                                                                                                <  2:1140113/121‑1 (MQ=255)
                                             tGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTCCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCg                                                                                                >  1:1140113/1‑121 (MQ=255)
                                              gAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑Ca                                                                                                     >  1:318958/1‑115 (MQ=255)
                                              gAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCg                                                                                                >  1:833788/1‑120 (MQ=255)
                                              gAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGt                                                                                                              <  1:464827/107‑1 (MQ=255)
                                               aGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACttt                                                                                                         <  1:1118222/111‑1 (MQ=255)
                                               aGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACATAATGCa                                                                            >  1:276244/1‑139 (MQ=255)
                                                ggATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCGCTCAATCACGACATAATGCAg                                                                           <  2:890741/139‑1 (MQ=255)
                                                 gATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACATAATGCAgg                                                                          >  1:68886/1‑139 (MQ=255)
                                                  aTGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCGCTCAATCACGACATAATg                                                                              <  1:980745/134‑1 (MQ=255)
                                                  aTGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTAAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCGCTCAATCACGACATAATg                                                                              >  2:980745/1‑134 (MQ=255)
                                                   tGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGt                                                                                                              >  1:334509/1‑102 (MQ=255)
                                                   tGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGt                                                                                                              <  2:334509/102‑1 (MQ=255)
                                                     cctCATCGCCATTGCTCCCCAAATACACAACCACTTCCTGACATTTCCTCAACCATTTTTTCGATGAACGCCGGAACGATCTCGTTTCAACTCGCCATGTACTTTT‑CATCCCGCTCGATAACGACATAATGCAGGCCtt                                                                      <  1:945117/137‑1 (MQ=255)
                                                      gTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACATAATGCAGGCCTTc                                                                     <  2:162334/139‑1 (MQ=255)
                                                       tCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACATAATGCAGGCCTTCa                                                                    <  2:1240939/139‑1 (MQ=255)
                                                               aTTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCGCTCAATCACGACATAATg                                                                              <  1:142651/121‑1 (MQ=255)
                                                                 tGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCAtac                                                          <  1:73271/139‑3 (MQ=255)
                                                                 tGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCAtac                                                          >  2:607050/1‑137 (MQ=255)
                                                                  gCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCAtacg                                                         <  2:255603/139‑4 (MQ=255)
                                                                  gCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCAtacg                                                         <  2:148672/139‑4 (MQ=255)
                                                                  gCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCAtacg                                                         <  2:768665/139‑4 (MQ=255)
                                                                  gCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATacg                                                         <  2:447515/139‑1 (MQ=255)
                                                                  gCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATgcg                                                         <  2:1537304/139‑1 (MQ=255)
                                                                      cccAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCggg                                                     >  2:454862/1‑139 (MQ=255)
                                                                        cAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTc                                                   <  2:1451993/139‑1 (MQ=255)
                                                                        cAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTc                                                   >  1:952386/1‑139 (MQ=255)
                                                                           aTACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCaa                                                                                                                          >  2:231649/1‑66 (MQ=255)
                                                                           aTACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCaa                                                                                                                          <  1:231649/66‑1 (MQ=255)
                                                                             aCAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGcc                                                                                                                  <  2:1118976/72‑1 (MQ=255)
                                                                             aCAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGcc                                                                                                                  >  1:1118976/1‑72 (MQ=255)
                                                                              cAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGtt                                             <  2:816158/139‑1 (MQ=255)
                                                                               aaaaCCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGTACGATCTCGTCAAAACTCGcc                                                                                                                  <  2:1139364/70‑1 (MQ=255)
                                                                                aaaCCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGcc                                                                                                                  <  1:384377/69‑1 (MQ=255)
                                                                                aaaCCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACATAATGCAGGCCTTCAc                                                                   >  2:378015/1‑115 (MQ=255)
                                                                                aaaCCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACATAATGCAGGCCTTCAc                                                                   <  1:378015/115‑1 (MQ=255)
                                                                                aaaCCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTgg                                           >  2:1010985/1‑139 (MQ=255)
                                                                                  aCCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCa                                         <  2:1322968/139‑1 (MQ=255)
                                                                                    cAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCaaa                                       >  2:100724/1‑139 (MQ=255)
                                                                                      aTTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CAtc                                                                                                   >  1:534880/1‑76 (MQ=255)
                                                                                      aTTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CAtc                                                                                                   <  2:534880/77‑2 (MQ=255)
                                                                                      aTTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCa                                         >  1:279136/1‑135 (MQ=255)
                                                                                      aTTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCa                                         <  2:279136/135‑1 (MQ=255)
                                                                                      aTTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGt                                     >  2:362987/1‑139 (MQ=255)
                                                                                       tttCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGc                                                                                               <  2:1099744/80‑1 (MQ=255)
                                                                                         tCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTAcc                                  <  2:952386/139‑1 (MQ=255)
                                                                                            gCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGcc                                                                                                                  <  2:299890/57‑1 (MQ=255)
                                                                                             ccAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGc                              <  1:1468719/139‑1 (MQ=255)
                                                                                             ccAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTCCTTTT‑CATTCCGCTCAATCACGACATAATGCAGGCCtt                                                                      >  2:733619/1‑99 (MQ=255)
                                                                                                 tGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACttt                                                                                                         >  1:1015143/1‑61 (MQ=255)
                                                                                                 tGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACttt                                                                                                         <  2:1015143/61‑1 (MQ=255)
                                                                                                   ccTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAAATCGCCATGTACTTTTCCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCAtttt                         >  1:1138299/1‑139 (MQ=255)
                                                                                                     tCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCGCTCAATCACAACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTc                      <  2:1424636/139‑1 (MQ=255)
                                                                                                       gTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTcgc                    >  2:459037/1‑139 (MQ=255)
                                                                                                       gTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTcgc                    >  2:910387/1‑139 (MQ=255)
                                                                                                         ccATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGt                  <  1:752111/139‑1 (MQ=255)
                                                                                                           aTTTTTTCGATGAACTCCGGCACTATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCa                >  1:964158/1‑139 (MQ=255)
                                                                                                           aTTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCa                                         >  2:1597040/1‑114 (MQ=255)
                                                                                                           aTTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCa                                         <  1:1597040/114‑1 (MQ=255)
                                                                                                           aTTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCa                >  1:1165910/1‑139 (MQ=255)
                                                                                                             tttttCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGa                                                                                     <  1:846455/68‑1 (MQ=255)
                                                                                                             tttttCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGa                                                                                     >  2:846455/1‑68 (MQ=255)
                                                                                                                ttCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCcac           <  1:362987/139‑1 (MQ=255)
                                                                                                                  cGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATg                                                                                                               <  1:835561/38‑1 (MQ=38)
                                                                                                                  cGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATg                                                                                                               >  2:835561/1‑38 (MQ=38)
                                                                                                                   gATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATg        <  1:291705/139‑1 (MQ=255)
                                                                                                                    aTGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCGCTCAATCACGACa                                                                                   >  2:1502535/1‑63 (MQ=255)
                                                                                                                    aTGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCGCTCAATCACGACa                                                                                   <  1:1502535/63‑1 (MQ=255)
                                                                                                                         cTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGt                                              <  1:1023525/95‑1 (MQ=255)
                                                                                                                                 ccATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTAcc                                  >  2:736495/1‑99 (MQ=255)
                                                                                                                                 ccATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTAcc                                  <  1:736495/99‑1 (MQ=255)
                                                                                                                                  cATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCa                                         <  2:577760/91‑1 (MQ=255)
                                                                                                                                  cATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCa                                         >  1:577760/1‑91 (MQ=255)
                                                                                                                                  |                                                                                                                                  
CCGCAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTAC  >  NC_000913/566043‑566302

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑