Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913566,2050TC57.9% 81.3 / 129.1 121pseudogene (172/279 nt)exoDpseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related
Reads supporting (aligned to +/- strand):  ref base T (23/28);  new base C (32/38);  total (55/66)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.52e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 123 total aligned reads displayed.

GGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGATTTTATTGCCTCGAA  >  NC_000913/566070‑566340
                                                                                                                                        |                                                                                                                                       
ggTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCg                                                                                                                                      <  2:111254/139‑1 (MQ=255)
cctACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCg                                                                                                                                      >  2:971278/3‑139 (MQ=255)
cctACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCACCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCg                                                                                                                                      >  1:225400/3‑139 (MQ=255)
  tACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCt                                                                                                                                    <  2:1611696/139‑1 (MQ=255)
   aCCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCGCTc                                                                                                                                   <  2:683209/139‑1 (MQ=255)
    cccGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCa                                                                                                                                  >  2:1468719/1‑139 (MQ=255)
    cccGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCa                                                                                                                                  >  2:119543/1‑139 (MQ=255)
    cccGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCGCTCa                                                                                                                                  >  2:472412/1‑139 (MQ=255)
      cGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCGCTCAAt                                                                                                                                <  2:283346/139‑1 (MQ=255)
        gATATTATCGTGAGGATGCGTCATAGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCGCTCAATCa                                                                                                                              <  2:899473/139‑1 (MQ=255)
             tatCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACa                                                                                                                         >  2:1352939/1‑139 (MQ=255)
             tatCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACa                                                                                                                         >  1:162334/1‑139 (MQ=255)
              atCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCa                                                                                                                              <  2:135525/133‑1 (MQ=255)
              atCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCa                                                                                                                              >  1:135525/1‑133 (MQ=255)
              atCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACAt                                                                                                                        >  1:447515/1‑139 (MQ=255)
                  tGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACATAATg                                                                                                                    <  1:614207/139‑1 (MQ=255)
                  tGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCg                                                                                                                                      <  2:1140113/121‑1 (MQ=255)
                  tGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTCCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCg                                                                                                                                      >  1:1140113/1‑121 (MQ=255)
                   gAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCg                                                                                                                                      >  1:833788/1‑120 (MQ=255)
                    aGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACATAATGCa                                                                                                                  >  1:255603/1‑139 (MQ=255)
                    aGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACATAATGCa                                                                                                                  >  1:276244/1‑139 (MQ=255)
                     ggATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCGCTCAATCACGACATAATGCAg                                                                                                                 <  2:890741/139‑1 (MQ=255)
                      gATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACATAATGCAgg                                                                                                                >  1:68886/1‑139 (MQ=255)
                       aTGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTAAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCGCTCAATCACGACATAATg                                                                                                                    >  2:980745/1‑134 (MQ=255)
                         gCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCGCTCAATCa                                                                                                                              >  1:615550/1‑122 (MQ=255)
                         gCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCGCTCAATCa                                                                                                                              <  2:615550/122‑1 (MQ=255)
                          cctCATCGCCATTGCTCCCCAAATACACAACCACTTCCTGACATTTCCTCAACCATTTTTTCGATGAACGCCGGAACGATCTCGTTTCAACTCGCCATGTACTTTT‑CATCCCGCTCGATAACGACATAATGCAGGCCtt                                                                                                            <  1:945117/137‑1 (MQ=255)
                           gTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACATAATGCAGGCCTTc                                                                                                           <  2:162334/139‑1 (MQ=255)
                            tCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACATAATGCAGGCCTTCa                                                                                                          <  2:1240939/139‑1 (MQ=255)
                            tCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACATAATGCAGGCCTTCa                                                                                                          <  1:832541/139‑1 (MQ=255)
                            tCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACATAATGCAGGCCTTCa                                                                                                          <  1:971278/139‑1 (MQ=255)
                            tCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCGCTCAATCACGACATAATGCAGGCCTTCa                                                                                                          <  2:521302/139‑1 (MQ=255)
                                cGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCt                                                                                                      >  2:752111/1‑139 (MQ=255)
                                    aTTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCGCTCAATCACGACATAATg                                                                                                                    >  2:142651/1‑121 (MQ=255)
                                    aTTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCGCTCAATCACGACATAATg                                                                                                                    <  1:142651/121‑1 (MQ=255)
                                      tGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCAtac                                                                                                <  1:73271/139‑3 (MQ=255)
                                       gCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCAtacg                                                                                               <  2:768665/139‑4 (MQ=255)
                                       gCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCAtacg                                                                                               <  2:148672/139‑4 (MQ=255)
                                       gCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATacg                                                                                               <  2:447515/139‑1 (MQ=255)
                                       gCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATacg                                                                                               <  2:1220595/139‑1 (MQ=255)
                                       gCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATgcg                                                                                               <  2:1537304/139‑1 (MQ=255)
                                           cccAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCggg                                                                                           >  2:454862/1‑139 (MQ=255)
                                             cAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTc                                                                                         <  2:1451993/139‑1 (MQ=255)
                                             cAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTc                                                                                         >  1:952386/1‑139 (MQ=255)
                                                   cAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGtt                                                                                   <  2:816158/139‑1 (MQ=255)
                                                     aaaCCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACATAATGCAGGCCTTCAc                                                                                                         <  1:378015/115‑1 (MQ=255)
                                                     aaaCCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTgg                                                                                 >  1:1553667/1‑139 (MQ=255)
                                                     aaaCCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTgg                                                                                 >  2:1010985/1‑139 (MQ=255)
                                                       aCCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCa                                                                               <  2:1322968/139‑1 (MQ=255)
                                                         cAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCaaa                                                                             >  2:100724/1‑139 (MQ=255)
                                                           aTTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCa                                                                               <  2:279136/135‑1 (MQ=255)
                                                           aTTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCa                                                                               >  1:279136/1‑135 (MQ=255)
                                                           aTTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGt                                                                           >  2:362987/1‑139 (MQ=255)
                                                            tttCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGCACTTTT‑CATCCCGc                                                                                                                                     >  1:1099744/1‑80 (MQ=255)
                                                              tCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTAcc                                                                        <  2:952386/139‑1 (MQ=255)
                                                                  ccAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGc                                                                    <  1:1468719/139‑1 (MQ=255)
                                                                  ccAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCGCTCAATCACGACATAATGCAGGCCtt                                                                                                            <  1:733619/99‑1 (MQ=255)
                                                                        ccTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAAATCGCCATGTACTTTTCCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCAtttt                                                               >  1:1138299/1‑139 (MQ=255)
                                                                          tCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCGCTCAATCACAACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTc                                                            <  2:1424636/139‑1 (MQ=255)
                                                                           cGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTcg                                                           >  1:986468/1‑139 (MQ=255)
                                                                            gTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTcgc                                                          >  2:459037/1‑139 (MQ=255)
                                                                              ccATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGt                                                        <  1:752111/139‑1 (MQ=255)
                                                                                aTTTTTTCGATGAACTCCGGCACTATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCa                                                      >  1:964158/1‑139 (MQ=255)
                                                                                aTTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCa                                                                               <  1:1597040/114‑1 (MQ=255)
                                                                                aTTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCa                                                                               >  2:1597040/1‑114 (MQ=255)
                                                                                  tttttCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGa                                                                                                                           >  2:846455/1‑68 (MQ=255)
                                                                                  tttttCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGa                                                                                                                           <  1:846455/68‑1 (MQ=255)
                                                                                   ttttCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCAccc                                                   <  2:276244/139‑1 (MQ=255)
                                                                                     ttCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCcac                                                 <  1:362987/139‑1 (MQ=255)
                                                                                           gAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTg                                           <  2:895886/139‑1 (MQ=255)
                                                                                              cTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGt                                                                                    <  1:1023525/95‑1 (MQ=255)
                                                                                              cTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGt                                                                                    >  2:1023525/1‑95 (MQ=255)
                                                                                              cTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTAc                                        <  2:1165910/139‑1 (MQ=255)
                                                                                                      cgaTCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCACCTg                                >  2:573777/3‑139 (MQ=255)
                                                                                                      ccATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTAcc                                                                        >  2:736495/1‑99 (MQ=255)
                                                                                                       gaTCTCGTCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCACCTgg                               <  1:459037/138‑1 (MQ=255)
                                                                                                       cATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCa                                                                               >  1:577760/1‑91 (MQ=255)
                                                                                                       cATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCa                                                                               <  2:577760/91‑1 (MQ=255)
                                                                                                             gTCAAAACTCGCCATGTACTTTTCCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCAt                          <  2:1138299/139‑1 (MQ=255)
                                                                                                              tCAAAACTCGCCATGTACTTTT‑CATTCCGCTCAATCACGACATAATGCAgg                                                                                                                <  2:466540/51‑1 (MQ=255)
                                                                                                              tCAAAACTCGCCATGTACTTTT‑CATTCCGCTCAATCACGACATAATGCAgg                                                                                                                >  1:466540/1‑51 (MQ=255)
                                                                                                              tCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACa                                                                                                                         >  1:1201807/1‑42 (MQ=255)
                                                                                                              tCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACATAATGCAGGCCTTCa                                                                                                          >  1:702280/1‑57 (MQ=255)
                                                                                                              tCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACATAATGCAGGCCTTCa                                                                                                          <  2:702280/57‑1 (MQ=255)
                                                                                                              tCAAAACTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAgg                                                                     >  2:628917/1‑94 (MQ=255)
                                                                                                                   aCTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTcgc                                                          <  2:124330/100‑1 (MQ=255)
                                                                                                                   aCTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTcgc                                                          >  1:124330/1‑100 (MQ=255)
                                                                                                                   aCTCGCCATGTACTTTT‑CATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGct                   <  1:1352939/139‑2 (MQ=255)
                                                                                                                    cTCGCCATGTACTTTT‑CATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATgcg                                                                                               <  1:1298051/62‑1 (MQ=255)
                                                                                                                       gCCATGTACTTTT‑CATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCcaca                                                <  2:1419985/106‑1 (MQ=255)
                                                                                                                       gCCATGTACTTTT‑CATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCcaca                                                >  1:1419985/1‑106 (MQ=255)
                                                                                                                            gTACTTTT‑CATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCTGACTTTAtg          <  1:174587/139‑2 (MQ=255)
                                                                                                                                  tt‑CATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGATTTTATTGCCTCg    >  1:1000195/1‑139 (MQ=255)
                                                                                                                                  tt‑CATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATacg                                                                                               <  1:751235/48‑1 (MQ=39)
                                                                                                                                  tt‑CATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATacg                                                                                               >  2:751235/1‑48 (MQ=255)
                                                                                                                                     cATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGATTTTATTGCCTCGaa  >  2:977326/1‑139 (MQ=255)
                                                                                                                                      aTTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCAccc                                                   >  2:120836/1‑89 (MQ=255)
                                                                                                                                      aTTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCAccc                                                   <  1:120836/89‑1 (MQ=255)
                                                                                                                                        tCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTcgc                                                          >  1:554793/1‑80 (MQ=255)
                                                                                                                                        tCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTcgc                                                          <  2:554793/80‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                       
GGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTT‑CATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGATTTTATTGCCTCGAA  >  NC_000913/566070‑566340

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑