| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,493,219 | A→G | E250E (GAA→GAG) | trg → | methyl‑accepting chemotaxis protein III, ribose and galactose sensor receptor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,493,219 | 0 | A | G | 100.0% | 249.9 / NA | 70 | E250E (GAA→GAG) | trg | methyl‑accepting chemotaxis protein III, ribose and galactose sensor receptor |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (35/35); total (35/35) | |||||||||||
TGGCGCGTTTGTGCTTGCCCTGGTCATGACGCTGATAACATTTATGGTGCTACGTCGGATCGTCATTCGTCCACTGCAACATGCCGCACAA‑CGGATTGAAAAAATCGCCAGTGGCGATCTGACGATGAATGATGAACCGGCGGGTCGTAATGAAATCGGTCGCTTAAGTCGTCATTTACAGCAAATGCAGCATTCACTGGGGATGACAGTAGGGACTGTTCGACAGGGCGCGGAAGAGATTTATCGTGGCACCAGCGAAATTTCAGCTGG > NC_000913/1493084‑1493353 | tGGCGCGTTTGTGCTTGCCCTGGTCATGACGCTGATAACATTTATGGTGCTACGTCGGATCGTCATTCGTCCACTGCAACATGCCGCACAA‑CGGATTGAAAAAATCGCCAGTGGCGATCTGACGATGAATGATGAGCcg > 1:1283226/1‑139 (MQ=255) gcgcGTTTGTGCTTGCCCTGGTCATGACGCTGATAACATTTATGGTGCTACGTCGGATCGTCATTCGTCCACTGCAACATGCCGCACAA‑CGGATTGAAAAAATCGCCAGTGGCGATCTGACGATGAATGATGAGCcggc > 1:1443197/1‑139 (MQ=255) gcgcGTTTGTGCTTGCCCTGGTCATGACGCTGATAACATTTATGGTGCTACGTCGGATCGTCATTCGTCCACTGCAACATGCCGCACAA‑CGGATTGAAAAAATCGCCAGTGGCGATCTGACGATGAATGATGAGCcggc > 1:719324/1‑139 (MQ=255) gcgcGTTTGTGCTTGCCCTGGTCATGACGCTGATAACATTTATGGTGCTACGTCGGATCGTCATTCGTCCACTGCAACATGCCGCACAA‑CGGATTGAAAAAATCGCCAGTGGCGATCTGACGATGAATGATGAGCcggc > 1:556149/1‑139 (MQ=255) gcgcGTTTGTGCTTGCCCTGGTCATGACGCTGATAACATTTATGGTGCTACGTCGGATCGTCATTCGTCCACTGCAACATGCCGCACAA‑CGGATTGAAAAAATCGCCAGTGGCGATCTGACGATGAATGATGAGCcggc < 1:924648/139‑1 (MQ=255) gcgcGTTTGTGCTTGCCCTGGTCATGACGCTGATAACATTTATGGTGCTACGTCGGATCGTCATTCGTCCACTGCAACATGCCGCACAA‑CGGATTGAAAAAATCGCCAGTGGCGATCTGACGATGAATGATGAGCcggc > 2:297094/1‑139 (MQ=255) gcgcGTTTGTGCTTGCCCTGGTCATGACGCTGATAACATTTATGGTGCTACGTCGGATCGTCATTCGTCCACTGCAACATGCCGCACAA‑CGGATTGAAAAAATCGCCAGTGGCGATCTGACGATGAATGATGAGCcggc < 1:297094/139‑1 (MQ=255) ccTGGTCATGACGCTGATAACATTTATGGTGCTACGTCGGATCGTCATTCGTCCACTGCAACATGCCGCACAA‑CGGATTGAAAAAATCGCCAGTGGCGATCTGACGATGAATGATGAGCCGGCGGGTCGTAATGAAATc < 2:1486922/139‑1 (MQ=255) ccTGGTCATGACGCTGATAACATTTATGGTGCTACGTCGGATCGTCATTCGTCCACTGCAACATGCCGCACAA‑CGGATTGAAAAAATCGCCAGTGGCGATCTGACGATGAATGATGAGCCGGCGGGTCGTAATGAAATc > 2:903690/1‑139 (MQ=255) tGGTCATGACGCTGATAACATTTATGGTGCTACGTCGGATCGTCATTCGTCCACTGCAACATGCCGCACAA‑CGGATTGAAAAAATCGCCAGTGGCGATCTGACGATGAATGATGAGCCGGCGGGTCGTAATGAAATCgg > 2:1539220/1‑139 (MQ=255) ggTCATGACGCTGATAACATTTATGGTGCTACGTCGGATCGTCATTCGTCCACTGCAACATGCCGCACAA‑CGGATTGAAAAAATCGCCAGTGGCGATCTGACGATGAATGATGAGCCGGCGGGTCGTAATGAAATCTGt > 2:931367/1‑139 (MQ=255) tGACGCTGATAACATTTATGGTGCTACGTCGGATCGTCATTCGTCCACTGCAACATGCCGCACAA‑CGGATTGAAAAAATCGCCAGTGGCGATCTGACGATGAATGATGAGCCGGCGGGTCGTAATGAAATCGGTCGCtt < 1:236477/139‑1 (MQ=255) tGACGCTGATAACATTTATGGTGCTACGTCGGATCGTCATTCGTCCACTGAAACAGGCCG‑ACAACCGGATTGAAAAAATCGCAAGTGGGGACCTGACGATGAATGATGAGCCGGCGGGCGGTAATGAAATCGGTCGCtt > 2:292415/1‑139 (MQ=255) gACGCTGATAACATTTATGGTGCTACGTCGGATCGTCATTCGTCCACTGCAACATGCCGCACAA‑CGGATTGAAAAAATCGCCAGTGGCGATCTGACGATGAATGATGAGCCGGCGGGTCGTAATGAAATCGGTCGCTTa > 1:521390/1‑139 (MQ=255) cGCTGATAACATTTATGGTGCTACGTCGGATCGTCATTCGTCCACTGCAACATGCCGCACAA‑CGGATTGAAAAAATCGCCAGTGGCGATCTGACGATGAATGATGAGCCGGCGGGTCGTAATGAAATCGGTCGCTTAAg < 2:77070/139‑1 (MQ=255) tGATAACATTTATGGTGCTACGTCGGATCGTCATTCGTCCACTGCTACATGCCGCACAA‑CGGATTGAAAAAATCGCCAGTGGCGATCTGACGATGAATGATGAGCCGGCGGGTCGTAATGAAATCGGTCGCTTAAgtcg > 2:1126653/1‑139 (MQ=255) cATTTATGGTGCTACGTCGGATCGTCATTCGTCCACTGCAACATGCCGCACAA‑CGGATTGAAAAAATCGCCAGTGGCGATCTGACGATGAATGATGAGCCGGCGGGTCGTAATGAAATCGGTCGCTTAAGTCGTCAttt < 1:576221/139‑1 (MQ=255) cATTTATGGTGCTACGTCGGATCGTCATTCGTCCACTGCAACATGCCGCACAA‑CGGATTGAAAAAATCGCCAGTGGCGATCTGACGATGAATGATGAGCCGGCGGGTCGTAATGAAATCGGTCGCTTAAGTCGTCAttt < 2:1443197/139‑1 (MQ=255) aTTTATGGTGCTACGTCGGATCGTCATTCGTCCACTGCAACATGCCGCACAA‑CGGATTGAAAAAATCGCCAGTGGCGATCTGACGATGAATGATGAGCCGGCGGGTCGTAATGAAATCGGTCGCTTAAGTCGTCATTTa > 1:483212/1‑139 (MQ=255) tttATGGTGCTACGTCGGATCGTCATTCGTCCACTGCAACATGCCGCACAA‑CGGATTGAAAAAATCGCCAGTGGCGATCTGACGATGAATGATGAGCCGGCGGGTCGTAATGAAATCGGTCGCTTAAg < 2:7754/128‑1 (MQ=255) tttATGGTGCTACGTCGGATCGTCATTCGTCCACTGCAACATGCCGCACAA‑CGGATTGAAAAAATCGCCAGTGGCGATCTGACGATGAATGATGAGCCGGCGGGTCGTAATGAAATCGGTCGCTTAAg > 1:7754/1‑128 (MQ=255) tttATGGTGCTACGTCGGATCGTCATTCGTCCACTGCAACATGCCGCACAA‑CGGATTGAAAAAATCGCCAGTGGCGATCTGACGATGAATGATGAGCCGGCGGGTCGTAATGAAATCGGTCGCTTAAGTCGTCATTTAc < 2:177371/139‑1 (MQ=255) tGGTGCTACGTCGGATCGTCATTCGTCCACTGCAACATGCCGCACAA‑CGGATTGAAAAAATCGCCAGTGGCGATCTGACGATGAATGATGAGCCGGCGGGTCGTa < 2:1502814/105‑1 (MQ=255) tGGTGCTACGTCGGATCGTCATTCGTCCACTGCAACATGCCGCACAA‑CGGATTGAAAAAATCGCCAGTGGCGATCTGACGATGAATGATGAGCCGGCGGGTCGTa > 1:1502814/1‑105 (MQ=255) cTACGTCGGATCGTCATTCGTCCACTGCAACATGCCGCACAA‑CGGATTGAAAAAATCGCCAGTGGCGATCTGACGATGAATGATGAGCCGGCGGGTCGTAATGAAATCGGTCGCTTAAGTCGTCATTTACAGc > 2:578564/1‑133 (MQ=255) cTACGTCGGATCGTCATTCGTCCACTGCAACATGCCGCACAA‑CGGATTGAAAAAATCGCCAGTGGCGATCTGACGATGAATGATGAGCCGGCGGGTCGTAATGAAATCGGTCGCTTAAGTCGTCATTTACAGc > 2:69062/1‑133 (MQ=255) cTACGTCGGATCGTCATTCGTCCACTGCAACATGCCGCACAA‑CGGATTGAAAAAATCGCCAGTGGCGATCTGACGATGAATGATGAGCCGGCGGGTCGTAATGAAATCGGTCGCTTAAGTCGTCATTTACAGc < 1:578564/133‑1 (MQ=255) cTACGTCGGATCGTCATTCGTCCACTGCAACATGCCGCACAA‑CGGATTGAAAAAATCGCCAGTGGCGATCTGACGATGAATGATGAGCCGGCGGGTCGTAATGAAATCGGTCGCTTAAGTCGTCATTTACAGc < 1:69062/133‑1 (MQ=255) cTACGTCGGATCGTCATTCGTCCACTGCAACATGCCGCACAA‑CGGATTGAAAAAATCGCCAGTGGCGATCTGACGATGAATGATGAGCCGGCGGGTCGTAATGAAATCGGTCGCTTAAGTCGTCATTTACAGCaa > 2:853891/1‑135 (MQ=255) cTACGTCGGATCGTCATTCGTCCACTGCAACATGCCGCACAA‑CGGATTGAAAAAATCGCCAGTGGCGATCTGACGATGAATGATGAGCCGGCGGGTCGTAATGAAATCGGTCGCTTAAGTCGTCATTTACAGCaa < 1:853891/135‑1 (MQ=255) cGTCGGATCGTCATTCGTCCACTGCAACATGCCGCACAA‑CGGATTGAAAAAATCGCCAGTGGCGATCTGACGATGAATGATGAGCCGGCGGGTCGTAATGAAATCGGTCGCTTAAGTCGTCATTTACAGCAAATgcagc > 1:1581667/1‑139 (MQ=255) gTCGGATCGTCATTCGTCCACTGCAACATGCCGCACAA‑CGGATTGAAAAAATCGCCAGTGGCGATCTGACGATGAATGATGAGCCGGCGGGTCGTAATGAAATCTGTCGATTAAGTCGTCATTTACAGCAAATgcagca < 1:931367/139‑1 (MQ=255) gATCGTCATTCGTCCACTGCTACATGCCGCACAA‑CGGATTGAAAAAATCGCCAGTGGCGATCTGACGATGAATGATGAGCCGGCGGGTCGTAATGAAATCGGTCGCTTAAGTCGTCATTTACAGCAAATGCAGCATTCa < 1:1126653/139‑1 (MQ=255) gATCGTCATTCGTCCACTGCAACATGCCGCACAA‑CGGATTGAAAAAATCGCCAGTGGCGATCTGACGATGAATGATGAGCCGGCGGGTCGTAATGAAATCGGTCGCTTAAgtcgtc > 2:540266/1‑116 (MQ=255) gATCGTCATTCGTCCACTGCAACATGCCGCACAA‑CGGATTGAAAAAATCGCCAGTGGCGATCTGACGATGAATGATGAGCCGGCGGGTCGTAATGAAATCGGTCGCTTAAgtcgtc < 1:540266/116‑1 (MQ=255) aTCGTCATTCGTCCACTGCAACATGCCGCACAA‑CGGATTGAAAAAATCGCCAGTGGCGATCTGAAGATGAATGATGAGCCGGCGGGTCGTAATGAAATCGGTCGATTAAGTCGTCATTTACAGCAAATGCAGCATTCAc > 1:390849/1‑139 (MQ=255) tCATTCGTCCACTGCAACATGCCGCACAA‑CGGATTGAAAAAATCGCCAGTGGCGATCTGACGATGAATGATGAGCCGGCGGGTCGTAATGAAATCGGTCGCTTAAGTCGTCATTTACAGCAAATGCAGCATTCACTggg < 1:91262/139‑1 (MQ=255) ttCGTCCACTGCAACATGCCGCACAA‑CGGATTGAAAAAATCGCCAGTGGCGATCTGACGATGAATGATGAGCCGGCGGGTCGTAATGAAATCGGTCGCTTAAGTCGTCATTTACAGCAAATGCAGCATTCACTGGGGAt < 2:556149/139‑1 (MQ=255) tCGTCCACTGCAACATGCCGCACAA‑CGGATTGAAAAAATCGCCAGTGGCGATCTGACGATGAATGATGAGCCGGCGGGTCGTAATGAAATCGGTCGCTTAAGTCGTCATTTACAGCAAATGCAGCATTCACTGGGGATg < 1:1132404/139‑1 (MQ=255) tCGTCCACTGCAACATGCCGCACAA‑CGGATTGAAAAAATCGCCAGTGGCGATCTGACGATGAATGATGAGCCGGCGGGTCGTAATGAAATCGGTCGCTTAAGTCGTCATTTACAGCAAATGCAGCATTCACTGGGGATg < 2:521390/139‑1 (MQ=255) cGTCCACTGCAACATGCCGCACAA‑CGGATTGAAAAAATCGCCAGTGGCGATCTGACGATGAATGATGAGCCGGCGGGTCGTAATGAAATCGGTCGCTTAAGTCGTCATTTACAGCAAATGCAGCATTCACTGGGGATGa < 2:1283226/139‑1 (MQ=255) cGTCCACTGCAACATGCCGCACAA‑CGGATTGAAAAAATCGCCAGTGGCGATCTGACGATGAATGATGAGCCGGCGGGTCGTAATGAAATCGGTCGCTTAAGTCGTCATTTACAGCAAATGCAGCATTCACTGGGGATGa > 1:533103/1‑139 (MQ=255) gTCCACTGCAACATGCCGCACAA‑CGGATTGAAAAAATCGCCAGTGGCGATCTGACGATGAATGATGAGCCGGCGGGTCGTAATGAAATCGGTCGCTTAAGTCGTCATTTACAGCAAATGCAGCATTCACTGGGGAt > 2:537248/1‑136 (MQ=255) gTCCACTGCAACATGCCGCACAA‑CGGATTGAAAAAATCGCCAGTGGCGATCTGACGATGAATGATGAGCCGGCGGGTCGTAATGAAATCGGTCGCTTAAGTCGTCATTTACAGCAAATGCAGCATTCACTGGGGAt < 1:537248/136‑1 (MQ=255) ccACTGCAACATGCCGCACAA‑CGGATTGATAAAATCGCCAGTGGCGATCTGACGATGAATGATGAGCCGGCGGGTCGTAATGAAATCGGTCGCTTAAGTCGTCATTTACAGCAAATGCAGCATTCACTGGGGATGACAg > 2:1075289/1‑139 (MQ=255) cTGCAACATGCCGCACAA‑CGGATTGAAAAAATCGCCAGTGGCGATCTGACGATGAATGATGAGCCGGCGGGTCGTAATGaa > 2:352798/1‑81 (MQ=255) cTGCAACATGCCGCACAA‑CGGATTGAAAAAATCGCCAGTGGCGATCTGACGATGAATGATGAGCCGGCGGGTCGTAATGaa < 1:352798/81‑1 (MQ=255) tGCAACATGCCGCACAA‑CGGATTGAAAAAATCGCCAGTGGCGATCTGACGATGAATGATGAGCCGGCGGGTCGTAATGAAATCGGTCGCTTAAGTCGTCATTTACAGCAAATGCAGCATTCACTGGGGATGACAGTAgg < 1:292415/139‑1 (MQ=255) cATGCCGCACAA‑CGGATTGAAAAAATCGCCAGTGGCGATCTGACGATGAATGATGAGCCGGCGGGTCGTAATGAAATCGGTCGCTTAAGTCGTCATTTACAGCAAAt > 2:206421/1‑107 (MQ=255) cATGCCGCACAA‑CGGATTGAAAAAATCGCCAGTGGCGATCTGACGATGAATGATGAGCCGGCGGGTCGTAATGAAATCGGTCGCTTAAGTCGTCATTTACAGCAAAt < 1:206421/107‑1 (MQ=255) cacaA‑CGGATTGAAAAAATCGCCAGTGGCGATCTGACGATGAATGATGAGCCGGCGGGTCGTAATGAAATCGGTCGCTTAAGTCGTCATTTACAGCaa > 2:405029/1‑98 (MQ=255) cacaA‑CGGATTGAAAAAATCGCCAGTGGCGATCTGACGATGAATGATGAGCCGGCGGGTCGTAATGAAATCGGTCGCTTAAGTCGTCATTTACAGCaa < 1:405029/98‑1 (MQ=255) cacaA‑CGGATTGAAAAAATCGCCAGTGGCGATCTGACGATGAATGATGAGCCGGCGGGTCGTAATGAAATCGGTCGCTTAAGTCGTCATTTACAGCAAATgcagc < 1:856846/105‑1 (MQ=255) cacaA‑CGGATTGAAAAAATCGCCAGTGGCGATCTGACGATGAATGATGAGCCGGCGGGTCGTAATGAAATCGGTCGCTTAAGTAGTCATTTACAGCAAATgcagc > 2:856846/1‑105 (MQ=255) atcgAAAAAATCGCCAGTGGCGATCTGACGATGAATGATGAGCCGGCGGGTCGTAATGAAATCGGTCGCTTAAGTCGTCATTTACAGCAAATGCAGCATTCACTGGGGATGACAGTAGGGACTGTTCGACAGGGCGCgg > 2:1329546/4‑139 (MQ=255) ttGAAAAAATCGCCAGTGGCGATCTGACGATGAATGATGAGCCGGCGGGTCGTAATGAAATCGGTCGCTTAAGTCGTCATTTACAGCAAATGCAGCATTCACTGGGGATGACAGTAGGGACTGTTCGACAGGGCGCGGa < 1:1539220/139‑1 (MQ=255) aaaaaTCGCCAGTGGCGATCTGACGATGAATGATGAGCCGGCGGGTCGTAATGAAATCGGTCGCTTAAGTCGTCATTTACAGCAAATGCAGCATTCACTGGGGa > 2:1131813/1‑104 (MQ=255) aaaaaTCGCCAGTGGCGATCTGACGATGAATGATGAGCCGGCGGGTCGTAATGAAATCGGTCGCTTAAGTCGTCATTTACAGCAAATGCAGCATTCACTGGGGa < 1:1131813/104‑1 (MQ=255) aaaTCGCCAGTGGCGATCTGACGATGAATGATGAGCCGGCGGGTCGTAATGAAATCGGTCGCTTAAgtcg > 2:1546252/1‑70 (MQ=255) aaaTCGCCAGTGGCGATCTGACGATGAATGATGAGCCGGCGGGTCGTAATGAAATCGGTCGCTTAAgtcg < 1:1546252/70‑1 (MQ=255) aTCGCCAGTGGCGATCTGACGATGAATGGTGAGCCGGCGGATGGTAGTGAAATCGGTCGCTTAAGTGGTCATTTAGAGCAATGACAGCATTCACGGGTGGTTGCAGTAGGGACTGTGCGACGGGTCGCAGaataacttt > 1:303617/1‑132 (MQ=255) ggCGATCTGACGATGAATGATGAGCCGGCGGGTCGTAATGAAATCGGTCGCTTAAGTCGTCATTTACAGCAAATGCAGCATTCACTGGGGATGACAGTAGGGACTGTTCGACAGGGCGCGGAAGAGATTTATCGTGGCa < 2:73733/139‑1 (MQ=255) gACGATGAATGATGAGGCGGCGGGTCGTAATGAAATCGGTCGCTTAAGTCGTCATTTACAGCAAATGCAGCATTCACTGGGGa < 2:217222/83‑1 (MQ=255) gACGATGAATGATGAGGCGGCGGGTCGTAATGAAATCGGTCGCTTAAGTCGTCATTTACAGCAAATGCAGCATTCACTGGGGa > 1:217222/1‑83 (MQ=255) gATGAATGATGAGCCGGCGGGTCGTAATGAAATCGGTCGCTTAAGTCGTCATTTACAGCAAATGCAGCATTCACTGGGGATGACAGTAGGGACTGTTCGACAGGgcg > 2:617862/1‑107 (MQ=255) gATGAATGATGAGCCGGCGGGTCGTAATGAAATCGGTCGCTTAAGTCGTCATTTACAGCAAATGCAGCATTCACTGGGGATGACAGTAGGGACTGTTCGACAGGgcg < 1:617862/107‑1 (MQ=255) aatgaTGAGCCGGCGGGTCGTAATGAAATCGGTCGCtt < 2:560191/38‑1 (MQ=255) aatgaTGAGCCGGCGGGTCGTAATGAAATCGGTCGCtt > 1:560191/1‑38 (MQ=255) tgatgaGCCGGCGGGTCGTAATGAAATCGGTCGCTTAAGTCGTCATTTACAGCAAATGCAGCATTCACTGGGGATGACAGTAGGGACTGTTCGACAGGGCGCGGAAGAGATTTATCGTGGCACCAGCGAAATTTCAGCt > 2:794258/1‑139 (MQ=255) atgaGCCGGCGGGTCGTAATGAAATCGGTCGCTTAAGTCGTCATTTACAGCAAATGCAGCATTCACTGGGGATGACAGTAGGGACTGTTCGACAGGGCGCGGAAGAGATTTATCGTGGCACCAGCGAAATTTCAGCTgg < 2:549004/139‑1 (MQ=255) | TGGCGCGTTTGTGCTTGCCCTGGTCATGACGCTGATAACATTTATGGTGCTACGTCGGATCGTCATTCGTCCACTGCAACATGCCGCACAA‑CGGATTGAAAAAATCGCCAGTGGCGATCTGACGATGAATGATGAACCGGCGGGTCGTAATGAAATCGGTCGCTTAAGTCGTCATTTACAGCAAATGCAGCATTCACTGGGGATGACAGTAGGGACTGTTCGACAGGGCGCGGAAGAGATTTATCGTGGCACCAGCGAAATTTCAGCTGG > NC_000913/1493084‑1493353 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |