Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,905,805	G→A	G40S (GGC→AGC)	mntP →	putative Mn(2+) efflux pump, mntR‑regulated

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,905,805	0	G	A	100.0%	249.5 / NA	77	G40S (GGC→AGC)	mntP	putative Mn(2+) efflux pump, mntR‑regulated
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (39/38);  total (39/38)

TCAGGACATTGTCATGAATATCACTGCTACTGTTCTTCTTGCGTTTGGTATGTCGATGGATGCATTTGCTGCATCAATCGGTAAAGGTGCCACCCTCCATAAA‑CCGAAATTTTCTGAAGCATTGCGAACCGGCCTTATTTTTGGTGCCGTCGAAACCCTGACGCCGCTGATCGGCTGGGGAATGGGCATGTTAGCCAGCCGGTTTGTCCTTGAATGGAACCACTGGATTGCGTTTGTGCTGCTGATATTCCTCGGCGGGCGAATG  >  NC_000913/1905675‑1905939                                                                                                                                    |                                                                                                                                       tCAGGACATTGTCATGAATATCACTGCTACTGTTCTTCTTGCGTTTGGTATGTCGATGGATGCATTTGCTGCATCAATCGGTAAAGGTGCCACCCTCCATAAACCCGAAATTTTCTGAAGCATTGCGAACCAGCCTTAt                                                                                                                                 >  1:209775/1‑139 (MQ=255) tCAGGACATTGTCATGAATATCACTGCTACTGTTCTTCTTGCGTTTGGTATGTCGATGGATGCATTTGCTGCATCAATCGGTAAAGGTGCCACCCTCCATAAA‑CCGAAATTTTCTGAAGCATTGCGAACCAGCCTTAtt                                                                                                                                >  1:786309/1‑139 (MQ=255)  cAGGACATTGTCATGAATATCACTGCTACTGTTCTTCTTGCGTTTGGTATGTCGATGGATGCATTTGCTGCATCAATCGGTAAAGGTGCCACCCTCCATAAA‑CCGAAATTTTCTGAAGCATTGCGAACCAGCCTTAttt                                                                                                                               >  1:892182/1‑139 (MQ=255)  cAGGACATTGTCATGAATATCACTGCTACTGTTCTTCTTGCGTTTGGTATGTCGATGGATGCATTTGCTGCATCAATCGGTAAAGGTGCCACCCTCCATAAA‑CCGAAATTTTCTGAAGCATTGCGAACCAGCCTTAttt                                                                                                                               >  1:1479739/1‑139 (MQ=255)       cATTGTCATGAATATCACTGCTACTGTTCTTCTTGCGTTTGGTATGTCGATGGATGCATTTGCTGCATCAATCGGTAAAGGTGCCACCCTCCATAAA‑CCGAAATTTTCTGAAGCATTGCGAACCAGCCTTATTTTTGGt                                                                                                                          <  2:403484/139‑1 (MQ=255)         ttGTCATGAATATCACTGCTACTGTTCTTCTTGCGTTTGGTATGTCGATGGATGCATTTGCTGCATCAATCGGTAAAGGTGCCACCCTCCATAAA‑CCGAAATTTTCTGAAGCATTGCGAACCAGCCTTATTTTTGGTGc                                                                                                                        <  2:1260478/139‑1 (MQ=255)          tGTCATGAATATCACTGCTACTGTTCTTCTTGGGTTTGGTATGTCGATGGATGCATTTGCTGCATCAATCGGTAAAGGTGCCACCCTCCATAAA‑CCGAAATTTTCTGAAGCATTGCGAACCAGCCTTATTTTTGGTGcc                                                                                                                       >  1:958111/1‑139 (MQ=255)          tGTCATGAATATCACTGCTACTGTTCTTCTTGCGTTTGGTATGTCGATGGATGCATTTGCTGCATCAATCGGTAAAGGTGCCACCCTCCATAAA‑CCGAAATTTTCTGAAGCATTGCGAACCAGCCTTATTTTTGGTGcc                                                                                                                       >  1:1588045/1‑139 (MQ=255)          tGTCATGAATATCACTGCTACTGTTCTTCTTGCGTTTGGTATGTCGATGGATGCATTTGCTGCATCAATCGGTAAAGGTGCCACCCTCCATAAA‑CCGAAATTTTCTGAAGCATCGCGAACCAGCCTTATTTTTGGTGcc                                                                                                                       >  2:1483208/1‑139 (MQ=255)               tGAATATCACTGCTACTGTTCTTCTTGCGTTTGGTATGTCGATGGATGCATTTGCTGCATCAATCGGTAAAGGTGCCACCCTCCATAAACCCGAAATTTTCTGAAGCATTGCGAACCAGCCTTATTTTTGGTGCCGTCg                                                                                                                   <  2:209775/139‑1 (MQ=255)               tGAATATCACTGCTACTGTTCTTCTTGCGTTTGGTATGTCGATGGATGCATTTGCTGCATCAATCGGTAAAGGTGCCACCCTCCATAAA‑CCGAAATTTTCTGAAGCATTGCGAACCAGCCTTATTTTTGGTGCCGTCGa                                                                                                                  >  1:508272/1‑139 (MQ=255)               tGAATATCACTGCTACTGTTCTTCTTGCGTTTGGTATGTCGATGGATGCATTTGCTGCATCAATCGGTAAAGGTGCCACCCTCCATAAA‑CCGAAATTTTCTGAAGCATTGCGAACCAGCCTTATTTTTGGTGCCGTCGa                                                                                                                  <  1:439333/139‑1 (MQ=255)                     tCACTGCTACTGTTCTTCTTGCGTTTGGTATGTCGATGGATGCATTTGCTACATCAATCGGTAAAGGTGCCACCCTCCATAAA‑CCGAAATTTTCTGAAGCATTGCGAACCAGCCTTATTTTTGGTGCCGTCGAAACCCt                                                                                                            <  2:495773/139‑1 (MQ=255)                      cACTGCTACTGTTCTTCTTGCGTTTGGTATGTCGATGGATGCATTTGCTGCATCAATCGGTAAAGGTGCCACCCTCCATAAA‑CCGAAATTTTCTGAAGCATTGCGAACCAGCCTTATTTTTGGTGCCGTCGAAACCCTg                                                                                                           >  2:990513/1‑139 (MQ=255)                      cACTGCTACTGTTCTTCTTGCGTTTGGTATGTCGATGGATGCATTTGCTGCATCAATCGGTAAAGGTGCCACCCTCCATAAA‑CCGAAATTTTCTGAAGCATTGCGAACCAGCCTTATTTTTGGTGCCGTCGAAACCCTg                                                                                                           >  2:1276780/1‑139 (MQ=255)                       aCTGCTACTGTTCTTCTTGCGTTTGGTATGTCGATGGATGCATTTGCTGCATCAATCGGTAAAGGTGCCACCCTCCATAAA‑CCGAAATTTTCTGAAGCATTGCGAACCAGCCTTATTTTTGGTGCCGTCGAAACCCTGa                                                                                                          <  1:494572/139‑1 (MQ=255)                       aCTGCTACTGTTCTTCTTGCGTTTGGTATGTCGATAGGTGCATTTGCTGCATCAATCGGTAAAGGTGCCACCCTCCATAAA‑CCGAAATTTTCTGAAGCATTGCGAACCAGCCTTATTTTTGGTGCCGTCGAAACCCTGa                                                                                                          <  1:1560547/139‑1 (MQ=255)                         tGCTACTGTTCTTCTTGCGTTTGGTATGTCGATGGATGCATTTGCTGCATCAATCGGTAAAGGTGCCACCCTCCATAAA‑CCGAAATTTTCTGAAGCATTGCGAACCAGCCTTATTTTTGGTGCCGTCGAAACCCTGAcg                                                                                                        >  1:278375/1‑139 (MQ=255)                         tGCTACTGTTCTTCTTGCGTTTGGTATGTCGATGGATGCATTTGCTGCATCAATCGGTAAAGGTGCCACCCTCCATAAA‑CCGAAATTTTCTGAAGCATTGCGAACCAGCCTTA‑‑TTTGGTGCCGTCGAAACCCTGAcgcc                                                                                                      >  1:982053/1‑139 (MQ=255)                           cTACTGTTCTTCTTGCGTTTGGTATGTCGATGGATGCATTTGCTGCATCAATCGGTAAAGGTGCCACCCTCCATAAA‑CCGAAATTTTCTGAAGCATTGCGAACCAGCCTTATTTTTGGTGCCGTCGAAACCCTGAcgcc                                                                                                      >  1:696215/1‑139 (MQ=255)                             aCTGTTCTTCTTGCGTTTGGTATGTCGATGGATGCATTTGCTGCATCAATCGGTAAAGGTGCCACCCTCCATAAA‑CCGAAATTTTCTGAAGCATTGCGAACCAGCCTTATTTTTGGTGCCGTCGAAACCCTGAcgccgc                                                                                                    >  1:1525056/1‑139 (MQ=255)                               tGTTCTTCTTGCGTTTGGTATGTCGATGGATGCATTTGCTGCATCAATCGGTAAAGGTGCCACCCTCCATAAA‑CCGAAATTTTCTGAAGCATTGCGAAGCAGCCTTA‑‑TTTGGTGCCGTCGAAACCCTGACGCCGCTGAt                                                                                                <  2:982053/139‑1 (MQ=255)                                 ttcttcttcCGTTTGGTATGTCGATGGATGCATTTGCTGCATCAATCGGTAAAGGTGCCACCCTCCATAAA‑CCGAACTTTTCTGAAGCATTGCGAACCAGCCTTATTTTTGGTGCCGTCGAAACCCTGACGCCGCTGAt                                                                                                <  2:958111/139‑1 (MQ=255)                                 ttcttcTTGCGTTTGGTATGTCGATGGATGCATTTGCTGCATCAATCGGTAAAGGTGCCACCCTCCATAAA‑CCGAAATTTTCTGAAGCATTGCGAACCAGCCTTATTTTTGGTGCCGTCGAAACCCTGACGCCGCTGAt                                                                                                <  2:1588045/139‑1 (MQ=255)                                 ttcttcTTGCGTTTGGTATGTCGATGGATGCATTTGCTGCATCAATCGGTAAAGGTGCCACCCTCCATAAA‑CCGAAATTTTCTGAAGCATTGCGAACCAGCCTTATTTTTGGTGCCGTCGAAACCCTGACGCCGCTGAt                                                                                                <  2:696215/139‑1 (MQ=255)                                      cttGCGTTTGGTATGTCGATGGATGCATTTGCTGCATCAATCGGTAAAGGTGCCACCCTCCATAAA‑CCGAAATTTTCTGAAGCATTGCGAACCAGcc                                                                                                                                     <  1:1458038/97‑1 (MQ=255)                                      cttGCGTTTGGTATGTCGATGGATGCATTTGCTGCATCAATCGGTAAAGGTGCCACCCTCCATAAA‑CCGAAATTTTCTGAAGCATTGCGAACCAGcc                                                                                                                                     >  2:1458038/1‑97 (MQ=255)                                      cttGCGTTTGGTATGTCGATGGATGCATTTGCTGCATCAATCGGTAAAGGTGCCACCCTCCATAAA‑CCGAAATTTTCTGAAGCATTGCGAACCAGCCTTATTTTTGGTCCCGTCGAAACCCTGACGCCGCTGATCGGCt                                                                                           >  1:234665/1‑139 (MQ=255)                                       ttGCGTTTGGTATGTCGATGGATGCATTTGCTGCATCAATCGGTAAAGGTGCCACCCTCCATAAA‑CCGAAATTTTCTGAAGCATTGCGAACCAGCCTTATTTTTGGTGCCGTCGAAACCCTGACGCCGCTGATCGGCTg                                                                                          <  2:892182/139‑1 (MQ=255)                                        tGCGTTTGGTATGTCGATGGATGCATTTGCTGCATCAATCGGTAAAGGTGCCACCCTCCATAAA‑CCGAAATTTTCTGAAGCATTGCGAACCAGCCTTATTTTTGGTGCCGTCGAAACCCTGACGCCGCTGAt                                                                                                >  2:717916/1‑132 (MQ=255)                                        tGCGTTTGGTATGTCGATGGATGCATTTGCTGCATCAATCGGTAAAGGTGCCACCCTCCATAAA‑CCGAAATTTTCTGAAGCATTGCGAACCAGCCTTATTTTTGGTGCCGTCGAAACCCTGACGCCGCTGAt                                                                                                <  1:717916/132‑1 (MQ=255)                                           gTTTGGTATGTCGATGGATGCATTTGCTGCATCAATCGGTAAAGGTGCCACCCTCCATAAA‑CCGAAATTTTCTGAAGCATTGCGAACCAGCCTTATTTTTGGTGCCGTCGAAACCCTGACGCCGCTGATCGGCTGGGGa                                                                                      >  1:44266/1‑139 (MQ=255)                                              tGGTATGTCGATGGATGCATTTGCTGCATCAATCGGTAAAGGTGCCACCCTCCATAAA‑CCGAAATTTTCTGAAGCATTGCGAACCAGACTTATTTTTGGTGCCGTCGAAACCCTGACGCCGCTGATCGGCTGGGGAATg                                                                                   >  2:634539/1‑139 (MQ=255)                                               ggTATGTCGATGGATGCATTTGCTGCATCAATCGGTAAAGGTGCCACCCTCCATAAA‑CCGAAATTTTCTGAAGCATTGCGAACCAGCCTTATTTTTGGTGCCGTCGAAACCCTGACGCCGCTGATCGGCTGGGGAATgg                                                                                  <  2:799527/139‑1 (MQ=255)                                               ggTATGTCGATGGATGCATTTGCTGCATCAATCGGTAAAGGTGCCACCCTCCATAAA‑CCGAAATTTTCTGAAGCATTGCGAACCAGCCTTATTTTTGGTGCCGTCGAAACCCTGACGCCGCTGATCGGCTGGGGAATgg                                                                                  <  2:1211276/139‑1 (MQ=255)                                                       gatggatgCATTTGCTGCATCAATCGGTAAAGGTGCCACCCTCCATAAA‑CCGAAATTTTCTGAAGCATTGCGAACCAGCCTTATTTTTGGTGCCGTCGAAACCCTGACGCCGCTGAt                                                                                                <  2:620114/117‑1 (MQ=255)                                                       gatggatgCATTTGCTGCATCAATCGGTAAAGGTGCCACCCTCCATAAA‑CCGAAATTTTCTGAAGCATTGCGAACCAGCCTTATTTTTGGTGCCGTCGAAACCCTGACGCCGCTGAt                                                                                                >  1:620114/1‑117 (MQ=255)                                                         tggatgCATTTGCTGCATCAATCGGTAAAGGTGCCACCCTCCATAAA‑CCGAAATTTTCTGAAGCATTGCGAACCAGCCTTATTTTTGGTGCCGTCGAAACCCTGACGCCGCTGATCGGCTGGGGAATGGGCATGTTagc                                                                        >  2:640604/1‑139 (MQ=255)                                                            atgCATTTGCTGCATCAATCGGTAAAGGTGCCACCCTCCATAAA‑CCGAAATTTTCTGAAGCATTGCGAACCAGCCTTATTTTTGGTGCCGTCGAAACCCTGACGCCGCTGATCGGCTGGGGAATGGGCATGTTagccag                                                                     <  1:1276780/139‑1 (MQ=255)                                                               cATTTGCTGCATCAATCGGTAAAGGTGCCACCCTCCATAAA‑CCGAAATTTTCTGAAGCATTGCGAACCAGCCTTATTTTTGGTGCCGTCGAAACCCTGACGCCGCTGATCGGCTGGGGAATGGGCATGTTAGCCAGCCg                                                                  >  2:958835/1‑139 (MQ=255)                                                                  ttGCTGCATCAATCGGTAAAGGTGCCACCCTCCATAAA‑CCGAAATTTTCTGAAGCATTGCGATCCAGCCTTATTTTTGGTGCCGTCGAAACCCTGACGCCGCTGATCGGCTGGGGAATGGGCATGTTAGCCAGCCGGtt                                                               <  1:1149473/139‑1 (MQ=255)                                                                  ttGCTGCATCAATCGGTAAAGGTGCCACCCTCCATAAA‑CCGAAATTTTCTGAAGCATCGCGAACCAGCCTTATTTTTGGTGCCGTCGAAACCCTGACGCCGCTGATCGGCTGGGGAATGGGCATGTTAGCCAGCCGGtt                                                               <  1:1483208/139‑1 (MQ=255)                                                                   tgctgcATCAATCGGTAAAGGTGCCACCCTCCATAAA‑CCGAAATTTTCTGAAGCATTGCGAACCAGCCTTATTTTTGGTGCCGTCGAAACCCTGACGCCGCTGATCgg                                                                                             >  1:372183/1‑108 (MQ=255)                                                                   tgctgcATCAATCGGTAAAGGTGCCACCCTCCATAAA‑CCGAAATTTTCTGAAGCATTGCGAACCAGCCTTATTTTTGGTGCCGTCGAAACCCTGACGCCGCTGATCgg                                                                                             <  2:372183/108‑1 (MQ=255)                                                                     ctgcATCAATCGGTAAAGGTGCCACCCTCCATAAA‑CCGAAATTTTCTGAAGCATTGCGAACCAGCCTTATTTTTGGTGCCGTCGAAACCCTGACGCCGCTGATCGGCTGGGGAATGGGCATGTTAGCCAGCCGGTTTGt                                                            >  1:531331/1‑139 (MQ=255)                                                                      tgcATCAATCGGTAAAGGTGCCACCCTCCATAAA‑CCGAAATTTTCTGAAGCATTGCGAACCAGCCTTATTTTTGGTGCCGTCGAAACCCTGACGCCGCTGATCGGCTGGGGAATGGGCATGTTAGCCAGCCGGTTTGTc                                                           <  2:22842/139‑1 (MQ=255)                                                                       gcATCAATCGGTAAAGGTGCCACCCTCCATAAA‑CCGAAATTTTCTGAAGCATTGCGAACCAGCCTTATTTTTGGTGCCGTCGAAACCCTGACGCCGCTGATCGGCTGGGGAATGGGCATGTTAGCCAGCCGGTTTGTcc                                                          <  2:765264/139‑1 (MQ=255)                                                                        cATCAATCGGTAAAGGTGCCACCCTCCATAAA‑CCGAAATTTTCTGAAGCATTGCGAACCAGCCTTATTTTTGGTGCCGTCGAAACCCTGACGCCGCTGAt                                                                                                <  1:1573764/100‑1 (MQ=255)                                                                        cATCAATCGGTAAAGGTGCCACCCTCCATAAA‑CCGAAATTTTCTGAAGCATTGCGAACCAGCCTTATTTTTGGTGCCGTCGAAACCCTGACGCCGCTGAt                                                                                                >  2:1573764/1‑100 (MQ=255)                                                                          tCAATCGGTAAAGGTGCCACCCTCCATAAA‑CCGAAATTTTCTGAAGCATTGCGAACCAGCCTTATTTTTGGTGCCGTCGAAACCCTGACGCCGCTGATCGGCTGGGGAATGGGCATGTTagccag                                                                     <  1:370628/125‑1 (MQ=255)                                                                          tCAATCGGTAAAGGTGCCACCCTCCATAAA‑CCGAAATTTTCTGAAGCATTGCGAACCAGCCTTATTTTTGGTGCCGTCGAAACCCTGACGCCGCTGATCGGCTGGGGAATGGGCATGTTagccag                                                                     >  2:370628/1‑125 (MQ=255)                                                                            aaTCGGTAAAGGTGCCACCCTCCATAAA‑CCGAAATTTTCTGAAGCATTGCGAACCAGCCTTATTTTTGGTGCCGTCGAAACCCTGACGCCGCTGATCGGCTGGGGAATGGGCATGTTAGCCAGCCGGTTTGTCCTTGaa                                                     <  1:990513/139‑1 (MQ=255)                                                                                        tGCCACCCTCCATAAA‑CCGAAATTTTCTGAAGCATTGCGAACCAGCCTTATTTTTGGTGCCGTCGAAACCCTGACGCCGCTGATCGGCTGGGGAATGGGCATGTTAGCCAGCCGGTTTGTCCTTGAATGGAACCACTgg                                         >  2:930955/1‑139 (MQ=255)                                                                                         gCCACCCTCCATAAA‑CCGAAATTTTCTGAAGCATTGCGAACCAGCCTTATTTTTGGTGCCGTCGAAACCCTGACGCCGCTGATCGGCTGGGGAATGGGCATGTTAGCCAGCCGGTTTGTCCTTGAATGGAACCACTGGa                                        <  1:712478/139‑1 (MQ=255)                                                                                          ccACCCTCCATAAA‑CCGAAATTTTCTGAAGCATTGCGAACCAGCCTTATTTTTGGTGCCGTCGAAACCCTGACGCCGCTGATCGGCTGGGGAATGGGCATGTTAGCCAGCCGGTTTGTCCTTGAATGGAACCACTGGAt                                       <  2:12098/139‑1 (MQ=255)                                                                                          ccACCCTCCATAAA‑CCGAAATTTTCTGAAGCATTGCGAACCAGCCTTATTTTTGGTGCCGTCGAAACCCTGACGCCGCTGATCGGCTGGGGAATGGGCATGTTAGCCAGCCGGTTTGTCCTTGAATGGAACCACTGGAt                                       >  1:133029/1‑139 (MQ=255)                                                                                           cACCCTCCATAAA‑CCGAAATTTTCTGAAGCATTGCGAACCAGCCTTATTTTTGGTGCCGTCGAAACCCTGACGCCGCTGATCGGCTGGGGAATGGGCATGTTAGCCAGCCGGTTTGTCCTTGAATGGAACCACTGGAtt                                      >  1:124078/1‑139 (MQ=255)                                                                                            aCCCTCCATAAA‑CCGAAATTTTCTGAAGCATTGCGAACCAGCCTTATTTTTGGTGCCGTCGAAACCCTGa                                                                                                          >  1:1066185/1‑70 (MQ=255)                                                                                            aCCCTCCATAAA‑CCGAAATTTTCTGAAGCATTGCGAACCAGCCTTATTTTTGGTGCCGTCGAAACCCTGa                                                                                                          <  2:1066185/70‑1 (MQ=255)                                                                                                  cATAAA‑CCGAAATTTTCTGAAGCATTGCGAACCAGCCTTATTTTTGGTGCCGTCGAAACCCTGACGCCGCTGATCGGCTGGGGAATGGGCATGTTAGCCAGCCGGTTTGTCCTTGAATGGAACCACTGGATTGCGTTtg                               >  2:172496/1‑139 (MQ=255)                                                                                                  cATAAA‑CCGAAATTTTCTGAAGCATTGCGAACCAGCCTTATTTTTGGTGCCGTCGAAACCCTGACGCCGCTGATCGGCTGGGGAATGGGCATGTTAGCCAGCCGGTTTGTCCTTGAATGGAACCACTGGATTGCGTTtg                               >  2:836148/1‑139 (MQ=255)                                                                                                   aTAAA‑CCGAAATTTTCTGAAGCATTGCGAACCAGCCTTATTTTTGGTGCCGTCGAAACCCTGACGCCGCTGATCGGCTGGGGAATGGGCATGTTAGCCAGCCGGTTTGTCCTTGAATGGAACCACTGGATTGCGTTtgt                              <  1:958835/139‑1 (MQ=255)                                                                                                     aaa‑CCGAAATTTTCTGAAGCATTGCGAACCAGACTTATTTTTGGTGCCGTCGAAACCCTGACGCCGCTGATCGGCTGGGGAATGGGCATGTTAGCCAGCCGGTTTGTCCTTGAATGGAACCACTGGATTGCGTTTGtgc                            <  1:634539/139‑1 (MQ=255)                                                                                                     aaa‑CCGAAATTTGCTGAAGCATTGCGAACCAGCCTTATTTTTGGTGCCGTCGAAACCCTGACGCCGCTGATCGGCTGGGGAATGGGCATGTTAGCCAGCCGGTTTGTCCTTCAATGGAACCACTGGATTGCGTTTGtgc                            <  1:961948/139‑1 (MQ=255)                                                                                                       a‑CCGAAATTTTCTGAAGCATTGCGAACCAGCCTTATTTTTGGTGCCGTCGAAACCCTGACGCCGCTGATCGGCTGGGGAATGGGCa                                                                               <  2:715229/86‑1 (MQ=255)                                                                                                       a‑CCGAAATTTTCTGAAGCATTGCGAACCAGCCTTATTTTTGGTGCCGTCGAAACCCTGACGCCGCTGATCGGCTGGGGAATGGGCa                                                                               >  1:715229/1‑86 (MQ=255)                                                                                                             aaTTTTCTGAAGCATTGCGAACCAGCCTTATTTTTGGTGCCGTCGAAACCCTGACGCCGCTGATCGGCTGGGGAATGGGCATGTTAGCCAGCCGGttt                                                              <  2:1365237/98‑1 (MQ=255)                                                                                                             aaTTTTCTGAAGCATTGCGAACCAGCCTTATTTTTGGTGCCGTCGAAACCCTGACGCCGCTGATCGGCTGGGGAATGGGCATGTTAGCCAGCCGGttt                                                              >  1:1365237/1‑98 (MQ=255)                                                                                                             aaTTTTCTGAAGCATTGCGAACCAGCCTTATTTTTGGTGCCGTCGAAACCCTGACGCCGCTGATCGGCTGGGGAATGGGCATGTTAGCCAGCCGGTTTGTCCTTGAATGGAACCACTGGATTGCGTTTGTGCTGCTGat                     >  2:1426285/1‑139 (MQ=255)                                                                                                             aaTTTTCTGAAGCATTGCGAACCAGCCTTATTTTTGGTGCCGTCGAAACCCTGACGCCGCTGATCGGCTGGGGAATGGGCATGTTAGCCAGCCGGTTTGTCCTTGAATGGAACCACTGGATTGCGTTTGTGCTGCTGat                     >  1:751930/1‑139 (MQ=255)                                                                                                               ttttCTGAAGCATTGCGAACCAGCCTTATTTTTGGTGCCGTCGAAACCCTGACGCCGCTGATCGGCTGGGGAATGGGCATGTTAGCCAGCCGGTTTGTCCTTGAATGGAACCACTGGATTGCGTTTGTGCTGCTGatat                   <  1:531168/139‑1 (MQ=255)                                                                                                                  tCTGAAGCATTGCGAACCAGCCTTATTTTTGGTGCCGTCGAAACCCTGACGCCGCTGATCGGCTGGGGAATGGGCATGTTAGCCAGCCGGTTTGTCCTTGAATGGAACCACTGGATTGCGTTTGTGCTGCTGATATTcc                >  1:216162/1‑139 (MQ=255)                                                                                                                            tGCGAACCAGCCTTATTTTTGGTGCCGTCGAAACCCTGACGCCGCTGATCGGCTGGGGAATGGGCATGTTAGCCAGCCGGTTTGTCCTTGAATGGAACCACTGGATTGCGTTTGTGCTGCTGATATTCCTCggcgggcg      <  2:1479739/139‑1 (MQ=255)                                                                                                                            tGCGAACCAGCCTTATTTTTGGTGCCGTCGAAACCCTGACGCCGCTGATCGGCTGGGGAATGGGCATGTTAGCCAGCCGGTTTGTCCTTGAATGGAACCACTGGATTGCGTTTGTGCTGCTGATATTCCTCggcgggcg      <  2:133029/139‑1 (MQ=255)                                                                                                                            tGCGAACCAGCCTTATTTTTGGTGCCGTCGAAACCCTGACGCCGCTGATCGGCTGGGGAATGGGCATGTTAGCCAGCCGGTTTGTCCTTGAATGGAACCACTGGATTGCGTTTGTGCTGCTGATATTCCTCggcgggcg      >  1:1100235/1‑139 (MQ=255)                                                                                                                                aaCCAGCCTTATTTTTGGTGCCGTCGAAACCCTGACGCCGCTGATCGGCTGGGGAATGGGCATGTTAGCCAGCCGGTTTGTCCTTGAATGGAACCACTGGATTGCGTTTGTGCTGCTGATATTCCTCGGCGGGCGAATg  <  1:1423500/139‑1 (MQ=255)                                                                                                                                aaCCAGCCTTATTTTTGGTGCCGTCGAAACCCTGACGCCGCTGATCGGCTGGGGAATGGGCATGTTAGCCAGCCGGTTTGTCCTTGAATGGAACCACTGGATTGCGTTTGTGCTGCTGATATTCCTCGGCGGGCGAATg  >  1:118365/1‑139 (MQ=255)                                                                                                                                    |                                                                                                                                       TCAGGACATTGTCATGAATATCACTGCTACTGTTCTTCTTGCGTTTGGTATGTCGATGGATGCATTTGCTGCATCAATCGGTAAAGGTGCCACCCTCCATAAA‑CCGAAATTTTCTGAAGCATTGCGAACCGGCCTTATTTTTGGTGCCGTCGAAACCCTGACGCCGCTGATCGGCTGGGGAATGGGCATGTTAGCCAGCCGGTTTGTCCTTGAATGGAACCACTGGATTGCGTTTGTGCTGCTGATATTCCTCGGCGGGCGAATG  >  NC_000913/1905675‑1905939

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑