| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,682,157 | (C)7→8 | coding (589/3282 nt) | yphG ← | DUF4380 domain‑containing TPR repeat protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,682,150 | 1 | . | C | 93.2% | 144.8 / 3.1 | 44 | coding (596/3282 nt) | yphG | DUF4380 domain‑containing TPR repeat protein |
| Reads supporting (aligned to +/- strand): ref base . (2/1); new base C (20/21); total (22/22) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.71e-01 | |||||||||||
CGAGAAATGTCCACTCCAGCGGAGTAGTCCACTTTGTAGTAAGTGCCGGTAGCGATGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑T‑CCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCAGGGCGCAGGGTGAAACCTGTCATCACCTGTAA > NC_000913/2682018‑2682280 | cGAGAAATGTCCACTCCAGCGGAGTAGTCCACTTTGTAGTAAGTGCCGGTAGCGATGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑T‑cccccc < 1:1050034/139‑1 (MQ=255)cGAGAAATGTCCACTCCAGCGGAGTAGTCCACTTTGTAGTAAGTGCCGGTAGCGATGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑T‑cccccc > 1:3745/1‑139 (MQ=255) agaAATGTCCACTCCAGCGGAGTAGTCCACTTTGTAGTAAGTGCCGGTAGCGATGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑T‑cccccccc > 2:358492/1‑138 (MQ=255) gAGTAGTCCACTTTGTAGTAAGTGCCGGTAGCGATGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TCCCCCCCCTTTCACTGCCGGGTTGGcc < 1:358492/139‑1 (MQ=255) tagtCCACTTTGTAGTAAGTGCCGGTAGCGATGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TCCCCCCCCTTTCACTGCCGGGTTGGCccac > 2:791158/1‑139 (MQ=255) tagtCCACTTTGTAGTAAGTGCCGGTAGCGATGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TCCCCCCCCTTTCACTGCCGGGTTGGCccac > 2:65148/1‑139 (MQ=255) tagtCCACTTTGTAGTAAGTGCCGGTAGCGATGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TCCCCCCCCTTTCACTGCCGGGTTGGCccac > 2:138851/1‑139 (MQ=255) gtCCACTTTGTAGTAAGTGCCGGTAGCGATGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TCCCCCCCCTTTCACTGCCGGGTTGGCccacca > 1:647669/1‑139 (MQ=255) gtCCACTTTGTAGTAAGTGCCGGTAGCGATGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TCCCCCCCCTTTCACTGCCGGGTTGGCcca < 2:501835/136‑1 (MQ=255) gtCCACTTTGTAGTAAGTGCCGGTAGCGATGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TCCCCCCCCTTTCACTGCCGGGTTGGCcca > 1:501835/1‑136 (MQ=255) tttGTAGTAAGTGCCGGTAGCGATGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TCCCCCCCCTTTCACTGCCGGGTTGGCccac > 1:1094821/1‑131 (MQ=255) tttGTAGTAAGTGCCGGTAGCGATGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TCCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGaa < 1:161223/139‑1 (MQ=255) tttGTAGTAAGTGCCGGTAGCGATGGGGAAAGCGGAGACGGCCCGTTTGCCGTCATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TCCCCCCCCTTTCACTGCCGGGTTGGCccac < 2:1094821/131‑1 (MQ=255) tGTAGTAAGTGCCGGTAGCGATGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TCCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAAt > 1:212194/1‑139 (MQ=255) agtaAGTGCCGGTAGCGATGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑T‑cccccc < 2:428713/102‑1 (MQ=255) agtaAGTGCCGGTAGCGATGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑T‑cccccc > 1:428713/1‑102 (MQ=255) agtaAGTGCCGGTAGCGATGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑T‑ccc < 2:716919/99‑1 (MQ=255) agtaAGTGCCGGTAGCGATGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑T‑ccc > 1:716919/1‑99 (MQ=255) gTAGCGATGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑T‑cccccc > 1:624516/1‑91 (MQ=255) gTAGCGATGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑T‑cccccc < 2:624516/91‑1 (MQ=255) tAGCGATGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TCCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCggcgtggcgt < 2:1090777/139‑1 (MQ=255) aTGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TCCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCg > 2:1204453/1‑139 (MQ=255) gAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TCCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTtata < 1:115347/139‑1 (MQ=255) gaCGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑T‑CCCCCCCcttt < 1:714252/76‑2 (MQ=255) gaCGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑T‑CCCCCCCcttt > 2:714252/1‑75 (MQ=255) cccGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TCCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGa > 1:1054502/1‑139 (MQ=255) cGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TCCCCCCCCTTTCACTGCCGGGTTGGCCCACcaca < 2:1314977/85‑1 (MQ=255) cGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TCCCCCCCCTTTCACTGCCGGGTTGGCCCACcaca > 1:1314977/1‑85 (MQ=255) cGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TCCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAgcg > 1:228312/1‑139 (MQ=255) acCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TCCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCa < 2:1224990/139‑1 (MQ=255) gccgTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TCCCCCCCCTTTCACTGCCggg < 2:646808/58‑1 (MQ=255) gccgTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TCCCCCCCCTTTCACTGCCggg > 1:646808/1‑58 (MQ=255) gccgTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TCCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCggcgtg < 2:1652565/88‑1 (MQ=255) gccgTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TCCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCggcgtg > 1:1652565/1‑88 (MQ=255) gccgTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TCCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCAggg > 2:1151085/1‑139 (MQ=255) gccgTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TCCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCAggg > 2:1235307/1‑139 (MQ=255) gccgTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TCCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCAggg > 2:102227/1‑139 (MQ=255) ccgTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TCCCCCCCCTTTCACTGCCGGGt < 2:675616/58‑1 (MQ=255) ccgTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TCCCCCCCCTTTCACTGCCGGGt > 1:675616/1‑58 (MQ=255) ccgTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TCCCCCCCCTTTCACTGCCGGGTTGGcc < 2:496601/63‑1 (MQ=255) ccgTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TCCCCCCCCTTTCACTGCCGGGTTGGcc > 1:496601/1‑63 (MQ=255) cgTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TCCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCAGGgcg < 1:791158/139‑1 (MQ=255) gTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑TCCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCAGGgcgc < 2:1054502/139‑1 (MQ=255) tCCGGCGGGAAGACGCTCTGATGCCCT‑TCCCCCCCCTTTCACTGCCGGGTTGGCcca < 2:275708/57‑1 (MQ=255) tCCGGCGGGAAGACGCTCTGATGCCCT‑TCCCCCCCCTTTCACTGCCGGGTTGGCcca > 1:275708/1‑57 (MQ=255) gcggGAAGACGCTCTGATGCCCT‑TCCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCAGGGCGCAGGGTGAAAc < 2:212194/139‑1 (MQ=255) cggGAAGACGCTCTGATGCCCTCC‑CCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCAGGGCGCAGGGTGAAAcc > 2:1493417/1‑139 (MQ=255) cggGAAGACGCTCTGATGCCCT‑TCCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCAGGGCGCAGGGTGAAAcc > 2:1010292/1‑139 (MQ=255) gACGCTCTGATGCCCT‑TCCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCAGGGCGCAGGGTGAAACCTGtcat < 1:65148/139‑1 (MQ=255) gACGCTCTGATGCCCT‑TCCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCAGGGCGCAGGGTGAAACCTGtcat < 1:102227/139‑1 (MQ=255) cGCTCTGATGCCCT‑TCCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCAGGGCGCAGGGTGAAACCTGtcatca < 2:3745/139‑1 (MQ=255) tctGATGCCCT‑TCCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCAGGGCGCAGGGTGAAACCTGTCATCACCt < 2:647669/139‑1 (MQ=255) aTGCCCT‑TCCCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCAGGGCGCAGGGTGAAACCTGTCATCACCTGTaa < 1:138851/139‑1 (MQ=255) | CGAGAAATGTCCACTCCAGCGGAGTAGTCCACTTTGTAGTAAGTGCCGGTAGCGATGGGGAAAGCGGAGACGGCCCGTTTGCCGTGATCAAACACCGCCGTTACATCCGGCGGGAAGACGCTCTGATGCCCT‑T‑CCCCCCCTTTCACTGCCGGGTTGGCCCACCACAAGAAATGACGCGGCGTGGCGTTCCCGTTATAGACGCGGCTGGCGATTTCCAGCGCCGCCCGGTCAGGGCGCAGGGTGAAACCTGTCATCACCTGTAA > NC_000913/2682018‑2682280 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |