| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,767,445 | (C)7→8 | intergenic (+90/‑265) | rnlB → / → yfjP | CP4‑57 prophage, uncharacterized protein/CP4‑57 prophage, 50S ribosome‑binding GTPase family protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,767,438 | 1 | . | C | 88.9% | 106.9 / 5.9 | 36 | intergenic (+83/‑272) | rnlB/yfjP | CP4‑57 prophage, uncharacterized protein/CP4‑57 prophage, 50S ribosome‑binding GTPase family protein |
| Reads supporting (aligned to +/- strand): ref base . (4/0); new base C (13/19); total (17/19) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.04e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AGCCTCTGTTTTGTCTCCCGATGATGTACGCCAAGTCCTGTCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑‑CCC‑C‑CCCTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTTCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTGGAAATCCTATGATGCCTTTCCCGGT > NC_000913/2767301‑2767565 | aGCCTCTGTTTTGTCTCCCGATGATGTACGCCAAGTCCTGTCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑‑c > 2:677567/1‑139 (MQ=255)aGCCTCTGTTTTGTCTCCCGATGATGTACGCCAAGTCCTGTCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑‑c < 1:677567/139‑1 (MQ=255) ctctGTTTTGTCTCCCGATGATGTACGCCAAGTCCTGTCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑‑ccc‑c < 2:584638/139‑1 (MQ=255) ctctGTTTTGTCTCCCGATGATGTACGCCAAGTCCTGTCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑‑ccc‑c < 1:72601/139‑1 (MQ=255) tctGTTTTGTCTCCCGATGATGTACGCCAAGTCCTGTCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑‑ccc‑c‑c < 1:1515758/139‑1 (MQ=255) tctGTTTTGTCTCCCGATGATGTACGCCAAGTCCTGTCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑‑ccc‑c‑c < 1:73658/139‑1 (MQ=255) gTTTTGTCTCCCGATGATGTACGCCAAGTCCTGTCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑‑ccc‑c‑cccc < 1:1118808/139‑2 (MQ=255) gTCTCCCGATGATGTACGCCAAGTCCTGTCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AAC‑CCC‑C‑CCCTcaca < 2:38498/139‑1 (MQ=255) gTCTCCCGATGATGTACGCCAAGTCCTGTCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AAC‑CCC‑C‑CCCTcaca < 1:444973/139‑1 (MQ=255) ttccccGATGGTGTACGCCAAGTCCTGTCAAAGGATTTTTGAAACCCTTCTTTCTAAACGAACCAGTAAAGAATTCGCCCTTTTGGCATGATATTAACCTGTCCAATATGATCCAATAGCCTT‑AA‑‑ccc‑c‑ccccctcaca < 1:486274/136‑8 (MQ=255) tcCCGATGATGTACGCCAAGTCCTGTCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AAC‑CCC‑C‑CCCTCACAACg > 1:985656/1‑139 (MQ=255) gTCCTGTCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATTAAA‑‑CCC‑C‑CCCTCACAACGTCCTGCATAAGGAacacat > 2:210695/1‑137 (MQ=255) tCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACCCCC‑C‑CCCTCACAACGTCCTGCATAGGGAACACGTTTTcc > 2:1410395/1‑139 (MQ=255) tCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AAC‑CCC‑C‑CCCTCACAACGTCCTGCATAGGGAACACGTTTTccc < 2:985656/139‑1 (MQ=255) tCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AAC‑CCC‑C‑CCCTCACAACGTCCTGCATAGGGAACACGTTTTccc < 2:811888/139‑1 (MQ=255) cAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACCCCC‑C‑CCCTCACAACGTCCTGCATAGGGAACACGTTTTccc < 1:1410395/139‑1 (MQ=255) ggATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AAC‑CCC‑C‑CCCTcaca > 1:578264/1‑106 (MQ=255) ggATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AAC‑CCC‑C‑CCCTcaca < 2:578264/106‑1 (MQ=255) tttGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑‑ccc‑c‑cccc > 1:600662/1‑95 (MQ=255) tttGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑‑ccc‑c‑cccc < 2:600662/96‑2 (MQ=255) tttGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑‑ccc‑c > 2:909279/1‑92 (MQ=255) tttGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑‑ccc‑c < 1:909279/92‑1 (MQ=255) ctttctAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AAC‑CCC‑C‑CCCTCACAACGTCCTGCATAGGGAac < 2:1148984/107‑1 (MQ=255) ctttctAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑‑c < 1:309820/77‑1 (MQ=255) ctttctAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑‑c > 2:309820/1‑77 (MQ=255) ctttctAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑‑CCCAC‑CCCTCACAACGTCCTGCATAGGGAac > 1:1148984/1‑107 (MQ=255) aaaCGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AAC‑CCC‑C‑CCCTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTTcccccc > 2:1018128/1‑139 (MQ=255) aaaCGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑‑CCC‑CACCCTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTTcccccc > 2:587810/1‑139 (MQ=255) aaCCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AAC‑CCC‑C‑CCCTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTTCCCCCCCTTTa < 1:1426516/139‑1 (MQ=255) aCCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AAC‑CCC‑C‑CCCTCCCAACGTCCTGCATAGGGAac > 1:1457894/1‑95 (MQ=255) aCCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AAC‑CCC‑C‑CCCTCACAACGTCCTGCATAGGGAac < 2:1457894/95‑1 (MQ=255) aCCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AAC‑CCC‑C‑CCCTCACAACGTCCTGCATAGGGAACACGTTTTccc < 2:837285/105‑1 (MQ=255) aCCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AAC‑CCC‑C‑CCCTCACAACGTCCTGCATAGGGAACACGTTTTccc > 1:837285/1‑105 (MQ=255) gTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AAC‑CCC‑C‑CCCTCACAACGTCCTGCATAGGGAACACGATTTCCCCTGTGCACCCACGACTAAATTTCCCCCCCTTTAAACtt < 1:453257/139‑1 (MQ=255) aaTTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AAC‑CCC‑C‑CCCTCACAACGTc > 1:148505/1‑72 (MQ=255) aaTTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AAC‑CCC‑C‑CCCTCACAACGTc < 2:148505/72‑1 (MQ=255) cGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AAC‑CCC‑C‑CCCTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTTccc > 2:699974/1‑116 (MQ=255) cGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AAC‑CCC‑C‑CCCTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTTccc < 1:699974/116‑1 (MQ=255) gCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AAC‑CCC‑C‑CCCTCACAACGTCCTGCATAGGGAACACg < 2:786757/83‑1 (MQ=255) gCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AAC‑CCC‑C‑CCCTCACAACGTCCTGCATAGGGAACACg > 1:786757/1‑83 (MQ=255) gCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AAC‑CCC‑C‑CCCTCACAACGTCCTGCATAGGGAAAACAATATCCCCTGTGCACTCACGACTAAATTTCCCCCCCCTTAAACTTCTCattaaaat > 2:453257/1‑136 (MQ=255) tCCAATATGATCAAATAGCATT‑AAC‑CCC‑C‑CCCTCACAACTTCCTGCATAGGGAACACGTTCTCCCCTGTGCACCCACGACTAAATTTCCCCCCCTTTAAACt > 1:1347993/1‑102 (MQ=255) tCCAATATGATCAAATAGCATT‑AAC‑CCC‑C‑CCCTCACAACGTCCTGCATAGGGAACACGtttt < 1:1457644/62‑1 (MQ=255) tCCAATATGATCAAATAGCATT‑AAC‑CCC‑C‑CCCTCACAACGTCCTGCATAGGGAACACGtttt > 2:1457644/1‑62 (MQ=255) tCCAATATGATCAAATAGCATT‑AAC‑CCC‑C‑CCCTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTTCCCCCCCTTTAAACt < 2:1347993/102‑1 (MQ=255) gATCAAATAGCATT‑AAC‑CCC‑C‑CCCTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTTCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTGGAAATCCTATGATGCCTTTc < 1:559018/139‑1 (MQ=255) aTCAAATAGCATT‑AAC‑CCC‑C‑CCCTCACAACGTCCTGCATAGCGAACACGTTTTCCCCTGTGCACCCACGACTAAATTTCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTGGAAATCCTATGATGCCTTTcc < 2:1344534/139‑1 (MQ=255) aaTAGCATT‑AA‑‑CCC‑CACCCTCACAACGTCCTGCATAGGGAACACGTTTTACCCTGTGCACCCACGACTAAAATTCCCCCCCTTACAACTTCTCAATAATGTCACCTATTTTCTGGAAATCCTATGATGCCTTTCCCGGt > 1:1344534/1‑139 (MQ=255) aGCATT‑AAC‑CCC‑C‑CCCTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCAcc < 1:1532526/58‑1 (MQ=255) aGCATT‑AAC‑CCC‑C‑CCCTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCAcc > 2:1532526/1‑58 (MQ=255) | AGCCTCTGTTTTGTCTCCCGATGATGTACGCCAAGTCCTGTCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑‑CCC‑C‑CCCTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTTCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTGGAAATCCTATGATGCCTTTCCCGGT > NC_000913/2767301‑2767565 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |