| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,313,739 | (C)5→4 | coding (252/2673 nt) | rcsD → | phosphotransfer intermediate protein in two‑component regulatory system with RcsBC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,313,735 | 0 | C | . | 100.0% | 165.7 / NA | 38 | coding (248/2673 nt) | rcsD | phosphotransfer intermediate protein in two‑component regulatory system with RcsBC |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (22/16); total (22/16) | |||||||||||
CGCCGTTAACGCCTGGCTGAAAGATAAAAGTTACCAGATTGTCGACATTACCCATGCTATCCAAAAGCGCGTCGATAACTGGCGTTACGTGACCTGGCAGATCTACGACAACATTGCCGCGACGACCTCCCCCTCCTCCGGCGAAGGTTTACAAGAGACGCGCCTGAAACAGGATGTCTACTATCTGGAGAAACCACGCCGCAAAACGGAAGCGTTAATCTTTGGCTCTCACGACAACTCAACGCTTGAGATG > NC_000913/2313607‑2313859 | cgcCGTTAACGCCTGGCTGAAAGATAAAAGTTACCAGATTGTCGACATTACCCATGCTATCCAAAAGCGCGTCGATAACTGGCGTTACGTGACCTGGCAGATCTACGACAACATTGCCGCGACGACCT‑CCCCTCCTCCg > 1:228716/1‑139 (MQ=255) ccGTTAACGCCTGGCTGAAAGATAAAAGTTACCAGATTGTCGACATTACCCATGCTATCCAAAAGCGCGTCGATAACTGGCGTTACGTGACCTGGCAGATCTACGACAACATTGCCGCGACGACCT‑CCCCTCCTCCGGc < 1:27679/139‑1 (MQ=255) gCTGAAAGATAAAAGTTACCAGATTGTCGACATTACCCATGCTATCCAAAAGCGCGTCGATAACTGGCGTTACGTGACCTGGCAGATCTACGACAACATTGCCGCGACGACCT‑CCCCTCCTCCGGCGAAGGTTTACAag > 1:586473/1‑139 (MQ=255) aaaaGTTACCAGATTGTCGACATTACCCATGCTATCCAAAAGCGCGTCGATAACTGGCGTTACGTGACCTGGCAGATCTACGACAACATTGCCGCGACGACCT‑CCCCTCCTCCGGc < 2:842099/116‑1 (MQ=255) aaaaGTTACCAGATTGTCGACATTACCCATGCTATCCAAAAGCGCGTCGATAACTGGCGTTACGTGACCTGGCAGATCTACGACAACATTGCCGCGACGACCT‑CCCCTCCTCCGGc < 2:599638/116‑1 (MQ=255) aaaaGTTACCAGATTGTCGACATTACCCATGCTATCCAAAAGCGCGTCGATAACTGGCGTTACGTGACCTGGCAGATCTACGACAACATTGCCGCGACGACCT‑CCCCTCCTCCGGc > 1:599638/1‑116 (MQ=255) aaaaGTTACCAGATTGTCGACATTACCCATGCTATCCAAAAGCGCGTCGATAACTGGCGTTACGTGACCTGGCAGATCTACGACAACATTGCCGCGACGACCT‑CCCCTCCTCCGGc > 1:842099/1‑116 (MQ=255) aaaGTTACCAGATTGTCGACATTACCCATGCTATCCAAAAGCGCGTCGATAACTGGCGTTACGTGACCTGGCAGATCTACGACAACATTGCCGCGACGACCT‑CCCCTCCTCCGGCGAAGGTTTACAAGAGACGCGCCTg > 2:681469/1‑139 (MQ=255) aTTGTCGACATTACCCATGCTATCCAAAAGCGCGTCGATAACTGGCGTTACGTGACCTGGCAGATCTACGACAACATTGCCGCGACGACCT‑CCCCTCCTCCGGCGAAg < 2:563919/108‑1 (MQ=255) aTTGTCGACATTACCCATGCTATCCAAAAGCGCGTCGATAACTGGCGTTACGTGACCTGGCAGATCTACGACAACATTGCCGCGACGACCT‑CCCCTCCTCCGGCGAAg > 1:563919/1‑108 (MQ=255) aTTGTCGACATTACCCATGCTATCCAAAAGCGCGTCGATAACTGGCGTTACGTGACCTGGCAGATCTACGACAACATTGCCGCGACGACCT‑CCCCTCCTCCGGCGAAGGTTTACAAGAGACGCGCCTGAAACAGGATGt < 1:681469/139‑1 (MQ=255) gCTATCCAAAAGCGCGTCGATAACTGGCGTTACGTGACCTGGCAGATCTACGACAACATTGCCGCGACGACCT‑CCCCTCCTCCGGCGAAGGTTTACAAGAGACGCGCCTGAAACAGGATGTCTACTATCTGGAGAAAcc > 2:501282/1‑139 (MQ=255) cAAAAGCGCGTCGATAACTGGCGTTACGTGACCTGGCAGATCTACGACAACATTGCCGCGACGACCT‑CCCCTCCTCCGGc < 2:816301/80‑1 (MQ=255) cAAAAGCGCGTCGATAACTGGCGTTACGTGACCTGGCAGATCTACGACAACATTGCCGCGACGACCT‑CCCCTCCTCCGGc > 1:816301/1‑80 (MQ=255) aaaGCGCGTCGATAACTGGCGTTACGTGACCTGGCAGATCTACGACAACATTGCCGCGACGACCT‑CCCCTCCTCCGGCGAAGGTTTACAAGAGACGCGCCTGAAACAGGATGTCTACTATCTGGAGAAACCACGCCGCa < 2:228716/139‑1 (MQ=255) aaGCGCGTCGATAACTGGCGTTACGTGACCTGGCAGATCTACGACAACATTGCCGCGACGACCT‑CCCCTCCTCCGGCGAAGGTTTACAAGAGACGCGCCTGAAACAGGATGTCTACTATCTGGAGAAACCACGCCGCaa > 2:755224/1‑139 (MQ=255) gcgTCGATAACTGGCGTTACGTGACCTGGCAGATCTACGACAACATTGCCGCGACGACCT‑CCCCTCCTCCGGCGAAGGTTTACAAGAGACGCGCCTGAAACAGGATGTC‑ACTATCTGGAGAAACCACGCCGCAAAACgg < 1:352516/139‑1 (MQ=255) cgTCGATAACTGGCGTTACGTGACCTGGCAGATCTACGACAACATTGCCGCGACGACCT‑CCCCTCCTCCGGCGAAGGTTTACAAGAGACGCGCCTGAAACAGGATGTCTACTATCTGGAGAAACCACGCCGCAAAACgg > 2:689432/1‑139 (MQ=255) cgTCGATAACTGGCGTTACGTGACCTGGCAGATCTACGACAACATTGCCGCGACGACCT‑CCCCTCCTCCGGCGAAGGTTTACAAGAGACGCGCCTGAAACAGGATGTCTACTATCTGGAGAAACCACGCCGCAAAACgg > 1:495203/1‑139 (MQ=255) gTCGATAACTGGCGTTACGTGACCTGGCAGATCTACGACAACATTGCCGCGACGACCT‑CCCCTCCTCCGGCGAAGGTTTACAAGAGACGCGCCTGAAACAGGATGTCTACTATCTGGAGAAACCACGCCGCAAAACGGa < 1:436871/139‑1 (MQ=255) cGTTACGTGACCTGGCAGATCTACGACAACATTGCCGCGACGACCT‑CCCCTCCTCCGGCGAAGGTTTACAAGAGACGCGCCTGAAACAGGATGTcta > 1:620258/1‑97 (MQ=255) cGTTACGTGACCTGGCAGATCTACGACAACATTGCCGCGACGACCT‑CCCCTCCTCCGGCGAAGGTTTACAAGAGACGCGCCTGAAACAGGATGTcta < 2:620258/97‑1 (MQ=255) aCCTGGCAGATCTACGACAACATTGCCGCGACGACCT‑CCCCTCCTCCGGCGAAGGTTTACAAGAGACGCGCCTGAAACAGGATGTCTACTATCTGGAGAAACCACGCCGCAAAACGGAAGCGTTAATCTTTGGCTCTCa > 2:388941/1‑139 (MQ=255) gATCTACGACAACATTGCCGCGACGACCT‑CCCGTCCTCCGGCGAAGGTTTACAAGAGACGCGCCTGAAAc < 1:560924/70‑1 (MQ=255) gATCTACGACAACATCGCCGCGACGACCT‑CCCCTCCTCCGGCGAAGGTTTACAAGAGACGCGCCTGAAAc > 2:560924/1‑70 (MQ=255) cTACGACAACATTGCCGCGACGACCT‑CCCCTCCTCCGGCGAAGGTTTACAAGAGACGCGCCTGAAACAGGATGTCTACTATCTGGAGAAACCACGCCGCAAAACGGAAGCGTTAATCTTTGGCTCTCACGACAACTCaa > 2:460706/1‑139 (MQ=255) acaTTGCCGCGACGACCT‑CCCCTCCTCCGGCGAAGGTTTACAAGAGACGCGCCTGAAACAGGAt < 1:687641/64‑1 (MQ=255) acaTTGCCGCGACGACCT‑CCCCTCCTCCGGCGAAGGTTTACAAGAGACGCGCCTGAAACAGGAt > 2:687641/1‑64 (MQ=255) acaTTGCCGCGACGACCT‑CCCCTCCTCCGGCGAAGGTTTACAAGAGACGCGCCTGAAACAGGATGTcta > 2:342745/1‑69 (MQ=255) acaTTGCCGCGACGACCT‑CCCCTCCTCCGGCGAAGGTTTACAAGAGACGCGCCTGAAACAGGATGTcta < 1:342745/69‑1 (MQ=255) caTTGCCGCGACGACCT‑CCCCTCCTCCGGCGAAGGTTTACAAGAGAcgc > 2:234989/1‑49 (MQ=255) caTTGCCGCGACGACCT‑CCCCTCCTCCGGCGAAGGTTTACAAGAGAcgc < 1:234989/49‑1 (MQ=255) caTTGCCGCGACGACCT‑CCCCTCCTCCGGCGAAGGTTTACAAGAGACGCGCCTGAAACAGGATGTCTACTATCTGGAGAAACCAcgccg < 2:70780/89‑1 (MQ=255) caTTGCCGCGACGACCT‑CCCCTCCTCCGGCGAAGGTTTACAAGAGACGCGCCTGAAACAGGATGTCTACTATCTGGAGAAACCAcgccg > 1:70780/1‑89 (MQ=255) caTTGCCGCGACGACCT‑CCCCTCCTCCGGCGAAGGTTTACAAGAGACGCGCCTGAAACAGGATGTCTACTATCTGGAGAAACCACGCCGCAAAACGGAAGCGTTAATCTTTGGCTCTCACGACAACTCAACGCTTgaga > 2:170656/1‑139 (MQ=255) ttGCCGCGACGACCT‑CCCCTCCTCCGGCGAAGGTTTACAAGAGACGCGCCTGAAACAGGATGTCTACTATCTGGAGAAACCACGCCGCAAAACGGAAGCGTTAATCTTTGGCTCTCACGACAACTCAACGCTTGAGATg > 2:79695/1‑139 (MQ=255) acgacCT‑CCCCTCCTCCGGCGAAGGTTTACAAGAGACGCGCCTGAAACAGGATGTCTACTAt < 1:437498/62‑1 (MQ=255) acgacCT‑CCCCTCCTCCGGCGAAGGTTTACAAGAGACGCGCCTGAAACAGGATGTCTACTAt > 2:437498/1‑62 (MQ=255) | CGCCGTTAACGCCTGGCTGAAAGATAAAAGTTACCAGATTGTCGACATTACCCATGCTATCCAAAAGCGCGTCGATAACTGGCGTTACGTGACCTGGCAGATCTACGACAACATTGCCGCGACGACCTCCCCCTCCTCCGGCGAAGGTTTACAAGAGACGCGCCTGAAACAGGATGTCTACTATCTGGAGAAACCACGCCGCAAAACGGAAGCGTTAATCTTTGGCTCTCACGACAACTCAACGCTTGAGATG > NC_000913/2313607‑2313859 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |