| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 582,148 | Δ1 bp | intergenic (+51/+4) | tfaD → / ← ybcY | pseudogene, DLP12 prophage, tail fiber assembly protein family,Phage or Prophage Related/pseudogene, DLP12 prophage, methyltransferase homology,Phage or Prophage Related |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 582,147 | 0 | G | . | 100.0% | 220.4 / NA | 53 | intergenic (+50/+5) | tfaD/ybcY | pseudogene, DLP12 prophage, tail fiber assembly protein family,Phage or Prophage Related/pseudogene, DLP12 prophage, methyltransferase homology,Phage or Prophage Related |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base . (30/23); total (30/23) | |||||||||||
GAAAAAATATCGGGTGTTGCTGAACCGTGTTGATACATCAACTGCACCTGATATTGAGTGGCCTACGAACCCTGTCAGGGAGTAATCATTGGGATTATGCCGCAGCACGTCTTAAGCAAGAACATGCTGCGGTTGGATGCTA‑TTTTTTTCCTGAAGCGGAAAACATTACTACAGTACCTTGAACCTTGGTTTTAACATTCTCGAAATGCTCTGAGAGTATATGTGTTAAGCCTTCTTCGGAATCTTTTGTGTTTGAAAAGATGCCTTT > NC_000913/582013‑582280 | gAAAAAATATCGGGTGTTGCTGAACCGTGTTGATACATCAACTGCACCTGATATTGAGTGGCCTACGAACCCTGTCAGGGAGTAATCATTGGGATTATGCCGCAGCACGTCTTAAGCAAGAACATGCTGCGGTTgatgt < 2:258537/139‑5 (MQ=255) gtgtTGCTGAACCGTGTTGATACATCAACTGCACCTGATATTGAGTGGCCTACGAACCCTGTCAGGGAGTAATCATTGGGATTATGCCGCAGCACGTCTTAAGCAAGAACATGCTGCGGTT‑GATGTTA‑TTTTTTTCCTg < 2:911148/139‑1 (MQ=255) tGAACCGTGTTGATACATCAACTGCACCTGATATTGAGTGGCCTACGAACCCTGTCAGGGAGTAATCATTGGGATTATGCCGCAGCACGTCTTAAGCAAGAACATGCTGCGGTT‑GATGTTA‑TTTTTTTCCTGAAGCGGa < 2:400699/139‑1 (MQ=255) aCCGTGTTGATACATCAACTGCACCTGATATTGAGTGGCCTACGAACCCTGTCAGGGAGTAATCATTGGGATTATGCCGCAGCACGTCTTAAGCAAGAACATGCTGCGGTT‑GATGTTATTTTTTTTCCTGAAGCGGaaa > 2:581985/1‑139 (MQ=255) tgtTGATACATCAACTGCACCTGATATTGAGTGGCCTACGAACCCTGTCAGGGAGTAATCATTGGGATTATGCCGCAGCACGTCTTAAGCAAGAACATGCTGCGGTT‑GATGTTA‑TTTTTTTCCTGAAGCGGAAAACAtt > 1:247061/1‑139 (MQ=255) cAACTGCACCTGATATTGAGTGGCCTACGAACCCTGTCAGGGAGTAATCATTGGGATTATGCCGCAGCACGTCTTAAGCAAGAACATGCTGCGGTT‑GATGTTA‑TTTTTTTCCTGAAGCGGAAAACATTACTACAGTAcc > 2:933892/1‑139 (MQ=255) aaCTGCACCTGATATTGAGTGGCCTACGAACCCTGTCAGGGAGTAATCATTGGGATTATGCCGCAGCACGTCTTAAGCAAGAACATGCTGCGGTT‑GATGTTA‑TTTTTTTCCTGAAGCGGAAAACATTACTACAGTACCt > 1:125202/1‑139 (MQ=255) cACCTGATATTGAGTGGCCTACGAACCCTGTCAGGGAGTAATCATTGGGATTATGCCGCAGCACGTCTTAAGCAAGAACATGCTGCGGTT‑GATGTTA‑TTTTTTTCCTGAAGCGGAAAACATtacta < 2:432421/126‑1 (MQ=255) cACCTGATATTGAGTGGCCTACGAACCCTGTCAGGGAGTAATCATTGGGATTATGCCGCAGCACGTCTTAAGCAAGAACATGCTGCGGTT‑GATGTTA‑TTTTTTTCCTGAAGCGGAAAACATtacta > 1:432421/1‑126 (MQ=255) cACCTGATATTGAGTGGCCTACGAACCCTGTCAGGGAGTAATCATTGGGATTATGCCGCAGCACGTCTTAAGCAAGAACATGCTGCGGTT‑GATGTTA‑TTTTTTTCCTGAAGCGGAAAACATTACTACAGTACCTTGAAc > 1:53785/1‑139 (MQ=255) atTGAGTGGCCTACGAACCCTGTCAGGGAGTAATCATTGGGATTATGCCGCAGCACGTCTTAAGCAAGAACATGCTGCGGTT‑GATGTTA‑TTTTTTTCCTGAAGCGGAAAACATTACTACAGTACCTTGAACCTTGGttt > 2:83204/1‑139 (MQ=255) ccTACGAACCCTGTCAGGGAGTAATCATTGGGATTATGCCGCAGCACGTCTTAAGCAAGAACATGCTGCGGTT‑GATGTTA‑TTTTTTTCCTGAAGCGGAAAACATTACTACAGTACCTTGAACCTTGGTTTTAACATtct > 1:956850/1‑139 (MQ=255) gAACCCTGTCAGGGAGTAATCATTGGGATTATGCCGCAGCACGTCTTAAGCAAGAACATGCTGCGGTT‑GATGTTA‑TTTTTTTCCTg > 2:37606/1‑86 (MQ=255) gAACCCTGTCAGGGAGTAATCATTGGGATTATGCCGCAGCACGTCTTAAGCAAGAACATGCTGCGGTT‑GATGTTA‑TTTTTTTCCTg < 1:37606/86‑1 (MQ=255) cTGTCAGGGAGTAATCATTGGGATTATGCCGCAGCACGTCTTAAGCAAGAACATGCTGCGGTT‑GATGTTA‑TTTTTTTCCTGAAGCGGAAAACATTACTACAGTACCTTGAACCt > 1:49263/1‑114 (MQ=255) cTGTCAGGGAGTAATCATTGGGATTATGCCGCAGCACGTCTTAAGCAAGAACATGCTGCGGTT‑GATGTTA‑TTTTTTTCCTGAAGCGGAAAACATTACTACAGTACCTTGAACCt < 2:49263/114‑1 (MQ=255) tCAGGGAGTAATCATTGGGATTATGCCGCAGCACGTCTTAAGCAAGAACATGCTGCGGTT‑GATGTTA‑TTTTTTTCCTGAAGCGGAAAACTTTACTACAGTACCTTGAACCTTGGTTTTAACATTCTCGAAATGCTCTga < 1:1011092/139‑1 (MQ=255) cAGGGAGTAATCATTGGGATTATGCCGCAGCACGTCTTAAGCAAGAACATGCTGCGGTT‑GATGTTA‑TTTTTTTCCTGAAGCGGAAAACATTACTACa > 1:972478/1‑97 (MQ=255) cAGGGAGTAATCATTGGGATTATGCCGCAGCACGTCTTAAGCAAGAACATGCTGCGGTT‑GATGTTA‑TTTTTTTCCTGAAGCGGAAAACATTACTACa < 2:972478/97‑1 (MQ=255) cAGGGAGTAATCATTGGGATTATGCCGCAGCACGTCTTAAGCAAGAACATGCTGCGGTT‑GATGTTA‑TTTTTTTCCTGAAGCGGAAAACATTACTACAGTACCTTGAACCTTGGTTTTAACATTCTCGAAATGCTCTgag < 1:933892/139‑1 (MQ=255) gTAATCATTGGGATTATGCCGCAGCACGTCTTAAGCAAGAACATGCTGCGGTT‑GATGTTA‑TTTTTTTCCTGAAGCGGAAAACATTACTACAGTACCTTGAACCTTGGTTTTAACATTCTCGAAATGCTCTGAGAGtata < 1:1114251/139‑1 (MQ=255) tAATCATTGGGATTATGCCGCAGCACGTCTTAAGCAAGAACATGCTGCGGTT‑GATGTTA‑TTTTTTTCCTGAAGCGGAAAACATTACTACAGTACCTTGAACCTTGGTTTTAACATTCTCGAAATGCTCTGAGAGTatat < 2:53785/139‑1 (MQ=255) aaTCATTGGGTCTATGCCGCAGCACGTCTTAAGCAAGAACATGCTGCGGTT‑GATGTTA‑TTTTTTTCCTGAAGCGGAAAAAATTACTACAGTACCTTGAACCTTGGTTTTAACATTCTCGAAATGCTCTGAGAGTATAtg > 2:267891/1‑139 (MQ=255) aTCATTGGGATTATGCCGCAGCACGTCTTAAGCAAGAACATGCTGCGGTTgatgt < 2:1083689/55‑5 (MQ=255) aTCATTGGGATTATGCCGCAGCACGTCTTAAGCAAGAACATGCTGCGGTTgatgt > 1:1083689/1‑51 (MQ=255) aTCATTGGGATTATGCCGCAGCACGTCTTAAGCAAGAACATGCTGCGGTT‑GATGTTA‑TTTTTTTCCTGAAGCGGAAAACATTACTACAGTACCTTGAACCTTGGTTTTAACATTCTCGAAATGCTCTGAGAGTATAtgt > 1:366519/1‑139 (MQ=255) gggATTATGCCGCAGTACGTCTTAAGCAAGAACATGCTGCGGTT‑GATGTTA‑TTTTTTTCCTGAAGCGGAAAACATTACTACAGTACCTTGAACCTTGGTTTTAACATTCTCGAAATGCTCTGAGAGTATATGTGTTAAg > 2:421283/1‑139 (MQ=255) gggATTATGCCGCAGCACGTCTTACGCAAGAACATGCTGCGGTT‑GATGTTA‑TTTTTTTCCTGAAGCGGaa > 2:753992/1‑70 (MQ=255) gggATTATGCCGCAGCACGTCTTAAGCAAGAACATGCTGCGGTT‑GATGTTA‑TTTTTTTCCTGAAGCGGaa < 1:753992/70‑1 (MQ=255) tGCCGCAGCACGTCTTAAGCAAGAACATGCTGCGGTT‑GATGTTA‑TTTTTTTCCTGAAGCGGAAAACATTACTACa < 2:773379/75‑1 (MQ=255) tGCCGCAGCACGTCTTAAGCAAGAACATGCTGCGGTT‑GATGTTA‑TTTTTTTCCTGAAGCGGAAAACATTACTACa > 1:773379/1‑75 (MQ=255) tGCCGCAGCACGTCTTAAGCAAGAACATGCTGCGGTT‑GATGTTA‑TTTTTTTCCTGAAGCGGAAAACATTACTACAGTACCTTGAACCTTGGTTTTAACATTCTCGAAATGCTCTGAGAGTATATGTGTTAAGCcttctt > 1:38577/1‑139 (MQ=255) cagcaCGTCTTAAGCAAGAACATGCTGCGGTT‑GATGTTA‑TTTTTTTCCTGAAGCGGaa < 1:830762/58‑1 (MQ=255) cagcaCGTCTTAAGCAAGAACATGCTGCGGTT‑GATGTTA‑TTTTTTTCCTGAAGCGGaa > 2:830762/1‑58 (MQ=255) cagcaCGTCTTAAGCAAGAACATGCTGCGGTT‑GATGTTA‑TTTTTTTCCTGAAGCGGAAAACATTACTACAGTACCTTGAACCTTGGTTTTAACATTCTCGAAATGCTCTGAGAGTATATGTGTTAAGCCTTCTTCGGaa > 2:1011118/1‑139 (MQ=255) ttAAGCAAGAACATGCTGCGGTT‑GATGTTA‑TTTTTTTCCTGAAGCGGAAAACATTACTACa > 1:73734/1‑61 (MQ=255) ttAAGCAAGAACATGCTGCGGTT‑GATGTTA‑TTTTTTTCCTGAAGCGGAAAACATTACTACa < 2:73734/61‑1 (MQ=255) aaGCAAGAACATGCTGCGGTT‑GATGTTA‑TTTTTTTCCTGAAGCGGAAAACATTACTACAGTACCTTGAACCTTGGTTTTAACATTCTCGAAATGCTCTGAGAGTATATGTGTTAAGCCTTCTTCGGAATCTTTTGTGtt < 1:614725/139‑1 (MQ=255) aGAACATGCTGCGGTT‑GATGTTA‑TTTTTTTCCTGAAGCGGaaaa > 1:708038/1‑44 (MQ=37) aGAACATGCTGCGGTT‑GATGTTA‑TTTTTTTCCTGAAGCGGaaaa < 2:708038/44‑1 (MQ=37) gAACATGCTGCGGTT‑GATGTTA‑TTTTTTTCCTGAAGCGGAAAACATTACTACAGTACCTTGAACCTTGGTTTTaa < 1:700238/75‑1 (MQ=255) gAACATGCTGCGGTT‑GATGTTA‑TTTTTTTCCTGAAGCGGAAAACATTACTACAGTACCTTGAACCTTGGTTTTaa > 2:700238/1‑75 (MQ=255) aaCATGCTGCGGTT‑GATGTTA‑TTTTTTTCCTGAAGCGGaa > 1:591782/1‑40 (MQ=25) aaCATGCTGCGGTT‑GATGTTA‑TTTTTTTCCTGAAGCGGaa < 2:591782/40‑1 (MQ=25) aaCATGCTGCGGTT‑GATGTTA‑TTTTTTTCCTGAAGCGGAAAACATTACTACAGt < 1:594110/54‑1 (MQ=38) aaCATGCTGCGGTT‑GATGTTA‑TTTTTTTCCTGAAGCGGAAAACATTACTACAGt > 2:594110/1‑54 (MQ=38) aaCATGCTGCGGTT‑GATGTTA‑TTTTTTTCCTGAAGCGGAAAACATTACTACAGTACCTTGAACCTTGGTTTTAACATTCTCGAAATGCTCTgag > 2:256098/1‑94 (MQ=255) aaCATGCTGCGGTT‑GATGTTA‑TTTTTTTCCTGAAGCGGAAAACATTACTACAGTACCTTGAACCTTGGTTTTAACATTCTCGAAATGCTCTgag < 1:256098/94‑1 (MQ=255) aaCATGCTGCGGTT‑GATGTTA‑TTTTTTTCCTGAAGCGGAAAACATTACTACAGTACCTTGAACCTTGGTTTTAACATTCTCGAAATGCTCTGAGAGTATATGTGTTAAGCCTTCTTCGGAATCTTTTGTGTTTGAAAAg > 2:489123/1‑139 (MQ=255) aaCATGCTGCGGTT‑GATGTTA‑TTTTTTTCCTGAAGCGGAAAACATTACTACAGTACCTTGAACCTTGGTTTTAACATTCTCGAAATGCTCTGAGAGTATATGTGTTAAGCCTTCTTCGGAATCTTTTGTGTTTGAAAAg > 1:425480/1‑139 (MQ=255) aaCATGCTGCGGTT‑GATGTTA‑TTTTTTTCCTGAAGCGGAAAACATTACTACAGTACCTTGAACCTTGGTTTTAACATTCTCGAAATGCTCTGAGAGTATATGTGTTAAGCCTTCTTCGGAATCTTTTGTGTTTGAAAAg > 1:1033885/1‑139 (MQ=255) gctgcGGTT‑GATGTTA‑TTTTTTTCCTGAAGCGGAAAACATTACTACAGTACCTTGAACCTTGGTTTTAACATTCTCGAAATGctct < 1:264008/86‑1 (MQ=255) gctgcGGTT‑GATGTTA‑TTTTTTTCCTGAAGCGGAAAACATTACTACAGTACCTTGAACCTTGGTTTTAACATTCTCGAAATGctct > 2:264008/1‑86 (MQ=255) ctgcGGTT‑GATGTTA‑TTTTTTTCCTGAAGCGGAAAACATTACTACAGTACCTTGAACCTTGGTTTTAACATTCTCGAAATGCTCTGAGAGTATATGTGTTAAGCCTTCTTCGGAATCTTTTGTGTTTGAAAAGATGCCt > 2:968069/1‑139 (MQ=255) gcGGTT‑GATGTTA‑TTTTTTTCCTGAAGCGGAAAACATTACTACAGTACCTTGAACCTTGGTTTTAACATTCTCGAAATGCTCTGAGAGTATATGTGTTAAGCCTTCTTCGGAATCTTTTGTGTTTGAAAAGATGCCttt < 2:425480/139‑1 (MQ=255) gcGGTT‑GATGTTA‑TTTTTTTCCTGAAGCGGAAAACATTACTACAGTACCTTGAACCTTGGTTTTAACATTCTCGAAATGCTCTGAGAGTATATGTGTTAAGCCTTCGTCGGAATCTTTTGTGTTTGAAAAGATGCCttt < 1:1011118/139‑1 (MQ=255) | GAAAAAATATCGGGTGTTGCTGAACCGTGTTGATACATCAACTGCACCTGATATTGAGTGGCCTACGAACCCTGTCAGGGAGTAATCATTGGGATTATGCCGCAGCACGTCTTAAGCAAGAACATGCTGCGGTTGGATGCTA‑TTTTTTTCCTGAAGCGGAAAACATTACTACAGTACCTTGAACCTTGGTTTTAACATTCTCGAAATGCTCTGAGAGTATATGTGTTAAGCCTTCTTCGGAATCTTTTGTGTTTGAAAAGATGCCTTT > NC_000913/582013‑582280 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |