| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,474,138 | (A)6→7 | coding (15/594 nt) | bdcR → | transcriptional repressor for divergent bdcA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,474,132 | 1 | . | A | 98.0% | 158.1 / ‑3.7 | 50 | coding (9/594 nt) | bdcR | transcriptional repressor for divergent bdcA |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base A (27/22); total (28/22) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GAGGATGAGAACTGTCTTACCTGTAAAAGCGCCCATAAGGACTCCTTGATTTATTATGTAACATGCATTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCAC‑T‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGTCAGTGTTGCTGAAGTTACTGATTATCT > NC_000913/4474018‑4474260 | gAGGATGAGAACTGTCTTACCTGTAAAAGCGCCCATAAGGACTCCTTGATTTATTATGTAACATGCATTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCAC‑TAAAAAAACAATCTCGCGTTCCAgg < 1:870937/139‑1 (MQ=255) aGGATGAGAACTGTCTTACCTGTAAAAGCGCCCATAAGGACTCCTTGATTTATTATGTAACATGCATTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCAC‑TAAAAAAACAATCTCGCGTTCCAGgt < 1:859913/139‑1 (MQ=255) tGAGAACTGTCTTACCTGTAAAAGCGCCCATAAGGACTCCTTGATTTATTATGTAACATGCATTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCAC‑TAAAAAAACAATCTCGCGTTCCAGgtcgtc > 2:831580/1‑139 (MQ=255) gTCTTACCTGTAAAAGCGCCCATAAGGACTCCTTGATTTATTATGTAACATGCATTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCAC‑TAAAAAAACAATCTCGCGTTCCAGgtcgtc > 2:703054/1‑131 (MQ=255) gTCTTACCTGTAAAAGCGCCCATAAGGACTCCTTGATTTATTATGTAACATGCATTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCAC‑TAAAAAAACAATCTCGCGTTCCAGgtcgtc < 1:703054/131‑1 (MQ=255) tCTTACCTGTAAAAGCGCCCATAAGGACTCCTTGATTTATTATGTAACATGCATTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCAC‑TAAAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGtt > 1:673251/1‑139 (MQ=255) cTTACCTGTAAAAGCGCCCATAAGGACTCCTTGATTTATTATGTAACATGCATTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCAC‑TAAAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGttt < 1:585555/139‑1 (MQ=255) aCCTGTAAAAGCGCCCATAAGGACTCCTTGATTTATTATGTAACATGCATTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCAC‑TAAAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGc > 1:409958/1‑139 (MQ=255) aaaaGCGCCCATAAGGACTCCTTGATTTATTATGTAACATGCATTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCAC‑TAAAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGa > 1:279064/1‑139 (MQ=255) aaaGCGCCCATAAGGACTCCTTGATTTATTATGTAACATGCATTACAAAACTGTTTTAAGTTTCTGTCAACAGGTTTTGTAATGGTCAC‑TAAAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAg < 2:673251/139‑1 (MQ=255) cgcCCATAAGGACTCCTTGATTTATTATGTAACATGCATTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCAC‑TAAAAAAACAATCTCGCGTTCCAGgt < 2:643187/111‑1 (MQ=255) cgcCCATAAGGACTCCTTGATTTATTATGTAACATGCATTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCAC‑TAAAAAAACAATCTCGCGTTCCAGgt > 1:643187/1‑111 (MQ=255) cgcCCATAAGGACTCCTTGATTTATTATGTAACATGCATTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCAC‑TAAAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAgg > 1:978875/1‑139 (MQ=255) tCCTTGATTTATTATGTAACATGCATTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCAC‑TAAAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAg < 1:925095/122‑1 (MQ=255) tCCTTGATTTATTATGTAACATGCATTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCAC‑TAAAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAg > 2:925095/1‑122 (MQ=255) tCCTTGATTTATTATGTAACATGCATTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCAC‑TAAAAAAACAATCTCGCGTTCCAGGACGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGc > 2:667006/1‑139 (MQ=255) tGCATTTCAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCAC‑TAAAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGttt < 1:38776/91‑1 (MQ=255) tGCATTTCAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCAC‑TAAAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGttt > 2:38776/1‑91 (MQ=255) tGCATTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCACAA‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCATGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCaaaa > 2:498411/1‑139 (MQ=255) tGCATTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCAC‑TAAAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAg < 2:751647/101‑1 (MQ=255) tGCATTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCAC‑TAAAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAg > 1:751647/1‑101 (MQ=255) tGCATTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCAC‑TAAAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCaaaa > 2:114344/1‑139 (MQ=255) tGCATTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCAC‑TAAAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCaaaa > 1:508161/1‑139 (MQ=255) tGCATTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCAC‑TAAAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCaaaa > 2:848235/1‑139 (MQ=255) gCATTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCAC‑TAAAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCaaaaa > 1:868736/1‑139 (MQ=255) aTTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCAC‑TAAAAAAACAATCTCGCGTTCCAGGTCGTCCCa > 2:792576/1‑81 (MQ=255) aTTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCAC‑TAAAAAAACAATCTCGCGTTCCAGGTCGTCCCa < 1:792576/81‑1 (MQ=255) aTTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCAC‑TAAAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAgg > 1:492104/1‑139 (MQ=255) aTTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCAC‑TAAAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAgg > 1:361714/1‑139 (MQ=255) aTTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCAC‑TAAAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAgg > 2:406512/1‑139 (MQ=255) tACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCAC‑TAAAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGtt > 1:855125/1‑139 (MQ=255) aaaCTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCAC‑TAAAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGa < 1:831580/139‑1 (MQ=255) aaCTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCAC‑TAAAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGt < 1:564196/114‑1 (MQ=255) aaCTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCAC‑TAAAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGt > 2:564196/1‑114 (MQ=255) cTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCAC‑TAAAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCAcc < 1:258553/123‑1 (MQ=255) cTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCAC‑TAAAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCAcc > 2:258553/1‑123 (MQ=255) ttttAACTTTCTGTCAACAGGTTTTGTAATGGTCAC‑TAAAAAAACAATCTCGCGTTCCAGGTCGTCCCAGa < 1:899328/71‑1 (MQ=255) ttttAACTTTCTGTCAACAGGTTTTGTAATGGTCAC‑TAAAAAAACAATCTCGCGTTCCAGGTCGTCCCAGa > 2:899328/1‑71 (MQ=255) ttttAACTTTCTGTCAACAGGTTTTGTAATGGTCAC‑TAAAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGttt > 2:165488/1‑76 (MQ=255) ttttAACTTTCTGTCAACAGGTTTTGTAATGGTCAC‑TAAAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGttt < 1:165488/76‑1 (MQ=255) ttttAACTTTCTGTCAACAGGTTTTGTAATGGTCAC‑TAAAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGt > 2:1099376/1‑139 (MQ=255) ttAACTTTCTGTCAACAGGTTTTGTAATGGTCAC‑TAAAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCaaa < 2:829109/104‑1 (MQ=255) ttAACTTTCTGTCAACAGGTTTTGTAATGGTCAC‑TAAAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCaaa > 1:829109/1‑104 (MQ=255) aCTTTCTGTCAACAGGTTTTGTAATGGTCAC‑TAAAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGTCAgtg < 2:868736/139‑1 (MQ=255) tttCTGTCAACAGGTTTTGTAATGGTCAC‑TAAAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGt > 2:480934/1‑132 (MQ=255) tttCTGTCAACAGGTTTTGTAATGGTCAC‑TAAAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGt < 1:480934/132‑1 (MQ=255) tCTGTCAACAGGTTTTGTAATGGTCAC‑TAAAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGTCAGTGTTGc < 2:492104/139‑1 (MQ=255) gTCAACAGGTTTTGTAATGGTCAC‑TAAAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGTCAGTGTTGCTGa < 2:279064/139‑1 (MQ=255) tAATGGTCAC‑TAAAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGTCAGTGTTGCTGAAGTTACTGATTATc < 1:848235/139‑1 (MQ=255) aaTGGTCAC‑TAAAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGTCAGTGTTGCTGAAGTTACTGATTATCt < 2:978875/139‑1 (MQ=255) | GAGGATGAGAACTGTCTTACCTGTAAAAGCGCCCATAAGGACTCCTTGATTTATTATGTAACATGCATTACAAAACTGTTTTAACTTTCTGTCAACAGGTTTTGTAATGGTCAC‑T‑AAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGTCAGTGTTGCTGAAGTTACTGATTATCT > NC_000913/4474018‑4474260 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |