Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,196,735	A→G	intergenic (+362/+132)	icd → / ← ymfD	isocitrate dehydrogenase, e14 prophage attachment site, tellurite reductase/e14 prophage, putative SAM‑dependent methyltransferase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,196,735	0	A	G	100.0%	338.4 / NA	93	intergenic (+362/+132)	icd/ymfD	isocitrate dehydrogenase, e14 prophage attachment site, tellurite reductase/e14 prophage, putative SAM‑dependent methyltransferase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (47/46);  total (47/46)

TTAAGACATCCCCAAAGTTAGTTATGTATTCACTGTTATTAGGACAATTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGACAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTACTGAGACTGTTTAACCTAGGGAATTATTATCG  >  NC_000913/1196603‑1196864                                                                                                                                      |                                                                                                                                  ttAAGACATCCCCAAAGTTAGTTATGTATTCACTGTTATTAGGACAATTATGAACTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACAACTCACCCGGGACTCGCCA‑GGGGGCAGCCa                                                                                                                             >  2:782762/1‑139 (MQ=255)   aaGACATCCCCAAAGTTAGTTATGTATTCACTGTTATTAGGACAATTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAAc                                                                                                                           >  2:896178/1‑139 (MQ=255)     gACATCCCCAAAGTTAGTTATGTATTCACTGTTATTAGGACAATTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAg                                                                                                                         >  1:834899/1‑139 (MQ=255)          ccccAAAGTTAGTTATGTATTCACTGTTATTAGGACAATTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCAtt                                                                                                                    >  2:936733/1‑139 (MQ=255)          ccccAAAGTTAGTTATGTATTCACTGTTATTAGGACAATTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCAtt                                                                                                                    >  1:865185/1‑139 (MQ=255)              aaaGTTAGTTATGTATTCACTGTTATTAGGACAATTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGt                                                                                                                <  2:126887/139‑1 (MQ=255)                 gttagttaTGTATTCACTGTTATTAGGACAATTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCa                                                                                                             <  1:896178/139‑1 (MQ=255)                     gttaTGTATTCACTGTTATTAGGACAATTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCa                                                                                                         >  2:623326/1‑139 (MQ=255)                          gTATTCACTGTTATTAGGACAATTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTa                                                                                                    <  1:805488/139‑1 (MQ=255)                           tATTCACTGTTATTAGGACAATTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAg                                                                                                   >  1:661822/1‑139 (MQ=255)                              tCACTGTTATTAGGACAATTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAg                                                                                                   >  1:509142/1‑136 (MQ=255)                              tCACTGTTATTAGGACAATTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAg                                                                                                   <  2:509142/136‑1 (MQ=255)                                    ttattaGGACAATTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTa                                                                                                    >  2:514868/1‑129 (MQ=255)                                    ttattaGGACAATTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTa                                                                                                    <  1:514868/129‑1 (MQ=255)                                     tattaGGACAATTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCa                                                                                             <  2:1033063/135‑1 (MQ=255)                                     tattaGGACAATTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCa                                                                                             >  1:1033063/1‑135 (MQ=255)                                       ttaGGACAATTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCaa                                                                                                                            <  2:238847/102‑1 (MQ=255)                                       ttaGGACAATTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCaa                                                                                                                            >  1:238847/1‑102 (MQ=255)                                           gACAATTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCg                                                                                   <  1:161840/139‑1 (MQ=255)                                             cAATTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGa                                                                                 <  1:915742/139‑1 (MQ=255)                                              aaTTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAg                                                                                                                                >  1:722812/1‑91 (MQ=255)                                              aaTTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAg                                                                                                                                <  2:722812/91‑1 (MQ=255)                                              aaTTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGaa                                                                                >  2:984604/1‑139 (MQ=255)                                                ttATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATg                                                                              >  1:118947/1‑139 (MQ=255)                                                               ccTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTa                                                                                         >  1:55095/1‑113 (MQ=255)                                                               ccTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTa                                                                                         <  2:55095/113‑1 (MQ=255)                                                               ccTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGa                                                               >  1:554456/1‑139 (MQ=255)                                                                   acacCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAgcgc                                                           <  1:936733/139‑1 (MQ=255)                                                                     acCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCgg                                                         <  1:984604/139‑1 (MQ=255)                                                                     acCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCgg                                                         <  2:554456/139‑1 (MQ=255)                                                                       ccGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAAc                                                                                                                           >  2:258533/1‑71 (MQ=255)                                                                       ccGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAAc                                                                                                                           <  1:258533/71‑1 (MQ=255)                                                                        cGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGccc                                                      >  1:377896/1‑139 (MQ=255)                                                                         gCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAgg                                                                                           >  2:917637/1‑101 (MQ=255)                                                                         gCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAgg                                                                                           <  1:917637/101‑1 (MQ=255)                                                                         gCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAgcgc                                                           <  2:306801/133‑1 (MQ=255)                                                                         gCTCAAATATTGTTAAATCGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAgcgc                                                           >  1:306801/1‑133 (MQ=255)                                                                          cTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTggg                                                                                                                 >  1:369056/1‑78 (MQ=255)                                                                          cTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTggg                                                                                                                 <  2:369056/78‑1 (MQ=255)                                                                          cTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCaa                                                                                                            <  1:697774/83‑1 (MQ=255)                                                                          cTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCaa                                                                                                            >  2:697774/1‑83 (MQ=255)                                                                          cTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAAt                                                                                                           <  1:323509/84‑1 (MQ=255)                                                                          cTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAAt                                                                                                           >  2:323509/1‑84 (MQ=255)                                                                          cTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTa                                                                                                    >  1:896634/1‑91 (MQ=255)                                                                          cTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTa                                                                                                    <  2:896634/91‑1 (MQ=255)                                                                          cTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGc                                                        <  1:1021034/135‑1 (MQ=255)                                                                          cTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGc                                                        >  2:1021034/1‑135 (MQ=255)                                                                          cTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCt                                                    >  2:1038146/1‑139 (MQ=255)                                                                          cTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCt                                                    >  1:849934/1‑139 (MQ=255)                                                                          cTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCt                                                    >  2:9429/1‑139 (MQ=255)                                                                          cTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCt                                                    >  1:130614/1‑139 (MQ=255)                                                                          cTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCt                                                    >  1:292993/1‑139 (MQ=255)                                                                          cTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGACAGGGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGcccc                                                     >  2:773672/1‑139 (MQ=255)                                                                                  ttGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCacatac                                            <  1:623326/139‑1 (MQ=255)                                                                                  ttGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCacatac                                            <  2:834899/139‑1 (MQ=255)                                                                                     ttAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGa                                                                                 <  2:675176/99‑1 (MQ=255)                                                                                     ttAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAgcgc                                                           >  1:756591/1‑121 (MQ=255)                                                                                     ttAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAgcgc                                                           <  2:756591/121‑1 (MQ=255)                                                                                     ttAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGcgcg                                                          >  2:347768/1‑122 (MQ=255)                                                                                     ttAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGcgcg                                                          <  1:347768/122‑1 (MQ=255)                                                                                     ttAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATc                                         >  1:590815/1‑139 (MQ=255)                                                                                     ttAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATc                                         >  2:439436/1‑139 (MQ=255)                                                                                     ttAAATTGCCGGTTCTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAAACACCTTAGCGTTCAGGTACATGCGGa                                                                                 >  1:675176/1‑99 (MQ=255)                                                                                     ttAAATTGACGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCATCACATACATc                                         >  1:721525/1‑139 (MQ=255)                                                                                            gCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTa                                  <  2:118947/139‑1 (MQ=255)                                                                                            gCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTa                                  >  2:476149/1‑139 (MQ=255)                                                                                             ccGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTAc                                 >  2:648412/1‑139 (MQ=255)                                                                                                 ttttGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTACTgag                             <  2:374436/139‑1 (MQ=255)                                                                                                 ttttGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTACTgag                             <  1:657281/139‑1 (MQ=255)                                                                                                 ttttGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTACTgag                             <  2:377896/139‑1 (MQ=255)                                                                                                  tttGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAATAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCTGCCCCTTCACATACATCTTTAGTACTgaga                            <  2:721525/139‑1 (MQ=255)                                                                                                  tttGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTACTgaga                            <  1:648412/139‑1 (MQ=255)                                                                                                  tttGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTACTgaga                            <  2:849934/139‑1 (MQ=255)                                                                                                  tttGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTACTgaga                            <  2:292993/139‑1 (MQ=255)                                                                                                  tttGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTACTgaga                            <  2:130614/139‑1 (MQ=255)                                                                                                           actactCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCtt                                                   >  2:424840/1‑107 (MQ=255)                                                                                                           actactCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCtt                                                   <  1:424840/107‑1 (MQ=255)                                                                                                                tCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCacatac                                            >  1:1014522/1‑109 (MQ=255)                                                                                                                tCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCacatac                                            <  2:1014522/109‑1 (MQ=255)                                                                                                                tCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTACTGAGACTGTTTAACCTAgg              >  2:977742/1‑139 (MQ=255)                                                                                                                 cACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTACTGAGACTGTTTAACCTAggg             <  1:782762/139‑1 (MQ=255)                                                                                                                       ggACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTcaca                                               >  1:451650/1‑99 (MQ=255)                                                                                                                       ggACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTcaca                                               <  2:451650/99‑1 (MQ=255)                                                                                                                       ggACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTACTgaga                            >  2:697692/1‑118 (MQ=255)                                                                                                                       ggACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTACTgaga                            <  1:697692/118‑1 (MQ=255)                                                                                                                       ggACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTACTgaga                            <  1:234232/118‑1 (MQ=255)                                                                                                                       ggACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTACTgaga                            >  2:234232/1‑118 (MQ=255)                                                                                                                         aCTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTACTGAGACTGTTTAACCTAGGGAAttatta     <  1:439436/139‑1 (MQ=255)                                                                                                                            cGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTACTGAGACTGTTTAACCTAGGGAATTATTATCg  <  2:661822/139‑1 (MQ=255)                                                                                                                             gCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCgg                                                         <  1:528627/83‑1 (MQ=255)                                                                                                                             gCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCgg                                                         >  2:528627/1‑83 (MQ=255)                                                                                                                             gCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCacatac                                            <  2:932880/96‑1 (MQ=255)                                                                                                                             gCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCacatac                                            >  1:932880/1‑96 (MQ=255)                                                                                                                                      |                                                                                                                                  TTAAGACATCCCCAAAGTTAGTTATGTATTCACTGTTATTAGGACAATTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGACAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTACTGAGACTGTTTAACCTAGGGAATTATTATCG  >  NC_000913/1196603‑1196864

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑