Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	183,607	Δ1 bp	coding (1145/1158 nt)	cdaR →	carbohydrate diacid regulon transcriptional regulator, autoregulator

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	183,607	0	A	.	100.0%	305.5 / NA	72	coding (1145/1158 nt)	cdaR	carbohydrate diacid regulon transcriptional regulator, autoregulator
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base . (40/32);  total (40/32)

GGCAACGTCAAAGGCGTTGTTTATTCATCGTAATACCCTGGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGT‑‑‑TGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCGGCT  >  NC_000913/183476‑183739                                                                                                                                       |                                                                                                                                     ggCAACGTCAAAGGCGTTGTTTATTCATCGTAATACCCTGGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGT‑‑‑TGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGc                                                                                                                              >  2:316266/1‑139 (MQ=255)    aaCGTCAAAGGCGTTGTTTATTCATCGTAATACCCTGGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGT‑‑‑TGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGt                                                                                                                           <  1:680602/139‑1 (MQ=255)          aaaGGCGTTGTTTATTCATCGTAATACCCTGGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGT‑‑‑TGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTa                                                                                                                     <  1:543751/139‑1 (MQ=255)                gttgttTATTCATCGTAATACCCTGGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGT‑‑‑TGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGtt                                                                                                               <  1:761018/139‑1 (MQ=255)                 ttgttTATTCATCGTAATACCCTGGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCg                                                                                                                 >  1:1253484/1‑139 (MQ=255)                   gttTATTCATCGTAATACCCTGGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGT‑‑‑TGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAg                                                                                                            >  2:359141/1‑139 (MQ=255)                            tCGTAATACCCTGGAGTATCGGCTTAATCGTACATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGT‑‑‑TGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTa                                                                                                                     >  2:959961/1‑121 (MQ=255)                            tCGTAATACCCTGGAGTATCGGCTTAATCGTACATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGT‑‑‑TGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTa                                                                                                                     <  1:959961/121‑1 (MQ=255)                            tCGTAATACCCGGGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGT‑‑‑TGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAggcg                                                                                                   >  1:851989/1‑139 (MQ=255)                             cGTAATACCCTGGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGT‑‑‑TGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAggcgg                                                                                                  >  1:1275818/1‑139 (MQ=255)                              gTAATACCCTGGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGT‑‑‑TGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAggcggc                                                                                                 >  1:1356816/1‑139 (MQ=255)                                    cccTGGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGT‑‑‑TGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGc                                                                                           <  2:930513/139‑1 (MQ=255)                                     ccTGGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGT‑‑‑TGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGc                                                                                           >  1:67059/1‑138 (MQ=255)                                     ccTGGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGT‑‑‑TGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGc                                                                                           <  2:67059/138‑1 (MQ=255)                                       tGGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGT‑‑‑TGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAgg                                                                                                     >  1:1380445/1‑126 (MQ=255)                                       tGGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGT‑‑‑TGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAgg                                                                                                     <  2:1380445/126‑1 (MQ=255)                                         gAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGT‑‑‑TGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTAGCTCAtt                                                                                      >  2:883818/1‑139 (MQ=255)                                            tATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGT‑‑‑TGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTccc                                                                                   >  2:910970/1‑139 (MQ=255)                                              tCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGT‑‑‑TGCTGCTGTATGTGGTGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTgg                                                                                            >  1:1186988/1‑128 (MQ=255)                                              tCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGT‑‑‑TGCTGCTGTATGTGGTGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTgg                                                                                            <  2:1186988/128‑1 (MQ=255)                                              tCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGT‑‑‑TGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGgcgc                                                                                               >  1:158840/1‑125 (MQ=255)                                              tCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGT‑‑‑TGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGgcgc                                                                                               <  2:158840/125‑1 (MQ=255)                                              tCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGT‑‑‑TGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCt                                                                                 >  2:703480/1‑139 (MQ=255)                                              tCGGCTTAATCGTATATCGAAACTGACCGTGCTTGATTTGGGCAATTTTGATGACAGGT‑‑‑TGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCt                                                                                 >  2:981706/1‑139 (MQ=255)                                               cGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGT‑‑‑TGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGc                                                                                           >  1:524355/1‑128 (MQ=255)                                               cGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGT‑‑‑TGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGc                                                                                           <  2:524355/128‑1 (MQ=255)                                                  cTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTc                                                                                <  2:1253484/139‑1 (MQ=255)                                                       tCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGT‑‑‑TGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGaa                                                                        <  1:703480/139‑1 (MQ=255)                                                       tCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGT‑‑‑TGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGaa                                                                        <  2:1356816/139‑1 (MQ=255)                                                       tCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGT‑‑‑TGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGaa                                                                        <  2:851989/139‑1 (MQ=255)                                                       tCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGT‑‑‑TGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGaa                                                                        <  1:910970/139‑1 (MQ=255)                                                       tCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGT‑‑‑TGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTAGCTCATTCCCCTCAGCCCGaa                                                                        <  1:883818/139‑1 (MQ=255)                                                           atatCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGT‑‑‑TGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGt                                                                    <  2:1275818/139‑1 (MQ=255)                                                                 gAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGT‑‑‑TGATGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGTTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAggg                                                              >  2:1222638/1‑139 (MQ=255)                                                                    cTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGT‑‑‑TGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTag                                                                  >  1:1422199/1‑132 (MQ=255)                                                                    cTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGT‑‑‑TGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTag                                                                  <  2:1422199/132‑1 (MQ=255)                                                                       aCCGGGCTTGATTTGGGCAATTTTGATGACAGGT‑‑‑TGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTa                                                                                                                     >  2:828184/1‑78 (MQ=255)                                                                       aCCGGGCTTGATTTGGGCAATTTTGATGACAGGT‑‑‑TGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTa                                                                                                                     <  1:828184/78‑1 (MQ=255)                                                                       aCCGGGCTTGATTTGGGCAATTTTGATGACAGGT‑‑‑TGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGc                                                        >  1:637896/1‑139 (MQ=255)                                                                        ccGGGCTTGATTTGGGCAATTTTGATGACAGGT‑‑‑TGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGAGTAGAGGGGAATGcc                                                       <  1:981706/139‑1 (MQ=255)                                                                            gCTTGATTTGGGCAATTTTGATGACAGGT‑‑‑TGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAgggg                                                             <  2:1275627/129‑1 (MQ=255)                                                                            gCTTGATTTGGGCAATTTTGATGACAGGT‑‑‑TGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAgggg                                                             >  1:1275627/1‑129 (MQ=255)                                                                                 aTTTGGGCAATTTTGATGACAGGT‑‑‑TGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAAc                                              >  1:1410664/1‑139 (MQ=255)                                                                                 aTTTGGGCAATTTTGATGACAGGT‑‑‑TGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAAc                                              >  2:320999/1‑139 (MQ=255)                                                                                      ggCAATTTTGATGACAGGT‑‑‑TGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGgcggcg                                                                                                <  1:1436080/84‑1 (MQ=255)                                                                                      ggCAATTTTGATGACAGGT‑‑‑TGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGgcggcg                                                                                                >  2:1436080/1‑84 (MQ=255)                                                                                      ggCAATTTTGATGACAGGT‑‑‑TGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTg                                                                                             >  2:304927/1‑87 (MQ=255)                                                                                      ggCAATTTTGATGACAGGT‑‑‑TGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTg                                                                                             <  1:304927/87‑1 (MQ=255)                                                                                      ggCAATTTTGATGACAGGT‑‑‑TGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGc                                                        >  2:46849/1‑124 (MQ=255)                                                                                      ggCAATTTTGATGACAGGT‑‑‑TGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGc                                                        <  1:46849/124‑1 (MQ=255)                                                                                           ttttGATGACAGGT‑‑‑TGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCGCTCAGCCCCaa                                                                        <  1:853167/103‑1 (MQ=255)                                                                                           ttttGATGACAGGT‑‑‑TGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGaa                                                                        >  2:853167/1‑103 (MQ=255)                                                                                           ttttGATGACAGGT‑‑‑TGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTag                                                                  <  1:735357/109‑1 (MQ=255)                                                                                           ttttGATGACAGGT‑‑‑TGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTag                                                                  >  2:735357/1‑109 (MQ=255)                                                                                           ttttGATGACAGGT‑‑‑TGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGTCAGTTCg                                    >  2:1031614/1‑139 (MQ=255)                                                                                              tgatgaCAGGT‑‑‑TGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGa                                 <  2:638106/139‑1 (MQ=255)                                                                                                     aGGT‑‑‑TGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGtt                                                                                                               <  1:1274122/54‑1 (MQ=255)                                                                                                     aGGT‑‑‑TGCTGCTGTATGTGGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGtt                                                                                                               >  2:1274122/1‑54 (MQ=255)                                                                                                                      tgtgGCGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTc            >  1:1334409/1‑139 (MQ=255)                                                                                                                           cGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGc                                                                                           <  2:987533/55‑1 (MQ=255)                                                                                                                           cGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGc                                                                                           >  1:987533/1‑55 (MQ=255)                                                                                                                           cGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTag                                                                  >  2:1403370/1‑80 (MQ=255)                                                                                                                           cGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTag                                                                  <  1:1403370/80‑1 (MQ=255)                                                                                                                           cGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGAt       >  1:317664/1‑139 (MQ=255)                                                                                                                           cGTTACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGAt       >  1:297515/1‑139 (MQ=255)                                                                                                                              tACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTg                                                                                             <  1:1393579/50‑1 (MQ=255)                                                                                                                              tACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTg                                                                                             >  2:1393579/1‑50 (MQ=255)                                                                                                                              tACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCgg    >  2:899183/1‑139 (MQ=255)                                                                                                                              tACAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCgg    >  2:1012258/1‑139 (MQ=255)                                                                                                                                cAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGgcggcg                                                                                                >  1:31011/1‑45 (MQ=255)                                                                                                                                cAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGgcggcg                                                                                                <  2:31011/45‑1 (MQ=255)                                                                                                                                cAACTGG‑TGAAGAGCGGTAAGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCGGCt  >  2:682874/1‑139 (MQ=255)                                                                                                                                       |                                                                                                                                     GGCAACGTCAAAGGCGTTGTTTATTCATCGTAATACCCTGGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGT‑‑‑TGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCAGCCCGAAGGGTAGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCGGCT  >  NC_000913/183476‑183739

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑