Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,765,829	(C)5→4	intergenic (‑53/‑89)	yfjM ← / → rnlA	CP4‑57 prophage, uncharacterized protein/CP4‑57 prophage, RNase LS

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,765,825	0	C	.	100.0%	342.5 / NA	81	intergenic (‑49/‑93)	yfjM/rnlA	CP4‑57 prophage, uncharacterized protein/CP4‑57 prophage, RNase LS
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base . (37/44);  total (37/44)

TTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑‑CCCCCCCGGTAGACGATCCTG‑CCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTT‑CCCCATATGTTTCTATGGGATCCAGGAAATGACAATCAGGAGTTACAAAAACTTAAATCTGGTCAGGGC  >  NC_000913/2765688‑2765958                                                                                                                                             |                                                                                                                                       ttGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGC‑CCCCCCCGGTAGACGATCCTG‑CCCTATAGTTGGAGTGc                                                                                                                                        <  2:575972/139‑1 (MQ=255)  tGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGC‑CCCCCCCGGTAGACGATCCTG‑CCCTATAGTTGGAGTGcc                                                                                                                                       >  2:988638/1‑139 (MQ=255)          ggCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGC‑CCCCCCCGGTAGACGATCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCa                                                                                                                              <  2:1448556/139‑1 (MQ=255)                         aGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGC‑CCCCCCCGGTAGACGATCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAGTTTAg                                                                                                               >  2:928011/1‑139 (MQ=255)                           tATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGCCCCCCCCCGGTAGCCGATCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGc                                                                                                              >  1:1195178/1‑139 (MQ=255)                           tATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGC‑CCCCCCCGGTAGACGATCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCa                                                                                                             <  1:988638/139‑1 (MQ=255)                           tATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGC‑CCCCCCCGGTAGACGATCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCa                                                                                                             >  1:397993/1‑139 (MQ=255)                           tATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGC‑CCCCCCCGGTAGACGATCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCa                                                                                                             >  1:1156692/1‑139 (MQ=255)                            aTCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGC‑CCCCCCCGGTAGACGATCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCaa                                                                                                            <  1:98295/139‑1 (MQ=255)                             tCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGC‑CCCCCCCGGTAGACGATCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCaaa                                                                                                           >  1:1136483/1‑139 (MQ=255)                              cGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGC‑CCCCCCCGGTAGACGATCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAAt                                                                                                          <  2:397993/139‑1 (MQ=255)                              cGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGC‑CCCCCCCGGTAGACGATCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAAt                                                                                                          >  1:1364556/1‑139 (MQ=255)                              cGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGC‑CCCCCCCGGTAGACGATCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAAt                                                                                                          >  2:1212471/1‑139 (MQ=255)                              cGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACAGCATCCCCCATTTTGTGGACTGC‑CCCCCCCGGTAGACGATCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCaaag                                                                                                          <  1:918341/139‑2 (MQ=255)                                  ttGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGC‑CCCCCCCGGTAGACGATCCTG‑CCCTGTAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAATCAAt                                                                                                      <  2:128057/139‑1 (MQ=255)                                   tgctgcTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGC‑CCCCCCCGGTAGACGATCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAGTTTAGCAAATCAATa                                                                                                     <  1:928011/139‑1 (MQ=255)                                   tgctgcTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGC‑CCCCCCCGGTAGACGATCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAATCAATa                                                                                                     <  1:1220832/139‑1 (MQ=255)                                   tgctgcTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGC‑CCCCCCCGGTAGACGATCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAATCAATa                                                                                                     <  2:1100066/139‑1 (MQ=255)                                   tgctgcTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGC‑CCCCCCCGGTAGACGATCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAATCAATa                                                                                                     <  2:1156692/139‑1 (MQ=255)                                   tgctgcTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGC‑CCCCCCCGGTAGACGATCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAATCAATa                                                                                                     <  1:195968/139‑1 (MQ=255)                                     ctgctTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGC‑CCCCCCCGGTAGACGATCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAATCAATaca                                                                                                   >  1:1461198/1‑139 (MQ=255)                                     ctgctTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGC‑CCCCCCCGGTAGACGATCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAATCAATaca                                                                                                   >  1:742289/1‑139 (MQ=255)                                     ctgctTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGC‑CCCCCCCGGTAGACGATCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAATCAATaca                                                                                                   >  1:928229/1‑139 (MQ=255)                                     ctgctTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGC‑CCCCCCCGGTAGACGATCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAATCAATaca                                                                                                   >  2:971021/1‑139 (MQ=255)                                           ggTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGC‑CCCCCCCGGTAGACGATCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAg                                                                                                               <  1:1151182/121‑1 (MQ=255)                                           ggTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGC‑CCCCCCCGGTAGACGATCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAg                                                                                             <  1:1399679/139‑1 (MQ=255)                                           ggTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGC‑CCCCCCCGGTAGAAGATCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAg                                                                                                               >  2:1151182/1‑121 (MQ=255)                                                gaTCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGC‑CCCCCCCGGTAGACGATCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAgggggg                                                                                        <  2:1136483/139‑1 (MQ=255)                                                gaTCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGC‑CCCCCCCGGTAGACGATCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAgggggg                                                                                        <  1:1212471/139‑1 (MQ=255)                                                gaTCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGC‑CCCCCCCAGTAGACGATCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAgggggg                                                                                        <  2:928229/139‑1 (MQ=255)                                                   cAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGCCCCCCCCCGGTAGACGATCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGta                                                                                      <  2:1195178/139‑1 (MQ=255)                                                           ggTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGC‑CCCCCCCGGTAGACGATCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTag                                                                             >  2:1011462/1‑139 (MQ=255)                                                            gTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGC‑CCCCCCCGGTAGACGATCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAggg                                                                                           <  2:774216/124‑1 (MQ=255)                                                            gTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGC‑CCCCCCCGGTAGACGATCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAggg                                                                                           >  1:774216/1‑124 (MQ=255)                                                              tACCGAAACGATGGACATCATCCCCCATTTTGTGGACTGC‑CCCCCCCGGTAGACGATCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGt                                                                          <  1:971021/139‑1 (MQ=255)                                                               aCCGAAACGATGGACATCATCCCCCATTTTGTGGACTGC‑CCCCCCCGGTAGACGATCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGtt                                                                         >  2:242039/1‑139 (MQ=255)                                                               aCCGAAACGATGGACATCATCCCCCATTTTGTGGACTGC‑CCCCCCCGGTAGACGATCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGtt                                                                         <  2:1461198/139‑1 (MQ=255)                                                                  gAAACGATGGACATCATCCCCCATTTTGTGGACTGC‑CCCCCCCGGTAGACGATCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTT‑cc                                                                     <  2:1364556/139‑1 (MQ=255)                                                                       gATGGACATCATCCCCCATTTTGTGGACTGC‑CCCCCCCGGTAGACGATCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTT‑CCCCata                                                                <  1:103094/139‑1 (MQ=255)                                                                                catcCCCCATTTTGTTGACTGC‑CCCCCCCGGTAGACGATCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTT‑CCCCATATGTTTCGAt                                                       <  1:312325/139‑1 (MQ=255)                                                                                catcCCCCATTTTGTGGACTGC‑CCCCCCCGGTAGACGATCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAggg                                                                                           <  2:722475/104‑1 (MQ=255)                                                                                catcCCCCATTTTGTGGACTGC‑CCCCCCCGGTAGACGATCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAggg                                                                                           >  1:722475/1‑104 (MQ=255)                                                                                 atcCCCCATTTTGTGGACTGC‑CCCCCCCGGTAGACGATCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGt                                                                          >  1:1120222/1‑120 (MQ=255)                                                                                 atcCCCCATTTTGTGGACTGC‑CCCCCCCGGTAGACGATCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGt                                                                          <  2:1120222/120‑1 (MQ=255)                                                                                 atcCCCCATTTTGTGGACTGC‑CCCCCCCGGTAGACGATCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTT‑CCCCATATGTTTCTATg                                                      <  1:1327550/139‑1 (MQ=255)                                                                                   cccccATTTTGTGGACTGC‑CCCCCCCGGTAGACGATCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAg                                                                                             <  2:273023/99‑1 (MQ=255)                                                                                   cccccATTTTGTGGACTGC‑CCCCCCCGGTAGACGATCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAg                                                                                             >  1:273023/1‑99 (MQ=255)                                                                                      ccATTTTGTGGACTGC‑CCCCCCCGGTAGACGATCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTT‑CCCCATATGTTTCTATGGGATc                                                 <  2:742289/139‑1 (MQ=255)                                                                                          tttGTGGACTGC‑CCCCCCCGGTAGACGATCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGtat                                                                                     <  1:1059420/100‑1 (MQ=255)                                                                                          tttGTGGACTGC‑CCCCCCCGGTAGACGATCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGtaa                                                                                     >  2:1059420/1‑99 (MQ=255)                                                                                            tgtgGACTGC‑CCCCCCCGGTAGACGATCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAATCAATa                                                                                                     >  2:1457353/1‑82 (MQ=255)                                                                                            tgtgGACTGC‑CCCCCCCGGTAGACGATCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAATCAATa                                                                                                     <  1:1457353/82‑1 (MQ=255)                                                                                             gtgGACTGC‑CCCCCCCGGTAGACGATCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTT‑CCCCATATGTTTCTATGGGATCCAGGaaa                                          <  2:1323892/139‑1 (MQ=255)                                                                                                    tgccccccccGGTAGACGATCCTGCCCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTT‑CCCCATATGTTTCTATGGGATCCAGGAAATGACa                                     >  1:1239678/4‑139 (MQ=255)                                                                                                     gccccccccGGTAGACGATCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAggg                                                                                           <  1:1380925/82‑1 (MQ=255)                                                                                                     gccccccccGGTAGACGATCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAggg                                                                                           >  2:1380925/3‑84 (MQ=255)                                                                                                     gccccccccGGTAGACGATCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGta                                                                                      <  1:272973/87‑1 (MQ=255)                                                                                                     gccccccccGGTAGACGATCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGta                                                                                      >  2:272973/3‑89 (MQ=255)                                                                                                     gccccccccGGTAGACGATCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTT‑CCCCa                                                                  <  1:482927/106‑1 (MQ=255)                                                                                                     gccccccccGGTAGACGATCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTT‑CCCCa                                                                  >  2:482927/3‑108 (MQ=255)                                                                                                      ccccccccGGTAGACGATCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTT‑CCCCATATGTTTCTATGGGATCCAGTAAATGACAATc                                  >  2:953097/2‑139 (MQ=255)                                                                                                      ccccccccGGTAGACGATCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTT‑CCCCATATGTTTCTATGGGATCCAGGAAATGACAATc                                  >  2:1073740/2‑139 (MQ=255)                                                                                                                tAGACGATCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAg                                                                                                               >  2:943396/1‑53 (MQ=255)                                                                                                                tAGACGATCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAg                                                                                                               <  1:943396/53‑1 (MQ=255)                                                                                                                  gACGATCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTTCCCCCATATGTTTCTATGGGATCCAGGAAATGACAATCAGGAGTTACaa                       <  1:1011462/139‑1 (MQ=255)                                                                                                                      aTCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGc                                                                                                              <  2:637039/48‑1 (MQ=255)                                                                                                                      aTCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGc                                                                                                              >  1:637039/1‑48 (MQ=255)                                                                                                                      aTCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTT‑CCCCATATGTTTCTATGGGATCCAGGaaa                                          <  1:214459/115‑1 (MQ=255)                                                                                                                      aTCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTT‑CCCCATATGTTTCTATGGGATCCAGGaaa                                          >  2:214459/1‑115 (MQ=255)                                                                                                                      aTCCTG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTT‑CCCCATATGTTTCTATGGGATCCAGGAAATGACAATCAGGAGTTACAAAAACt                  <  1:953097/139‑1 (MQ=255)                                                                                                                          tG‑CCCTATAGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTT‑CCCCATATGTTTCTATGGGATCCAGGAAATGACAATCAGGAGTTACAAAAACTTaaa              >  1:1171006/1‑139 (MQ=255)                                                                                                                                  taGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGtt                                                                         <  2:1387325/74‑1 (MQ=255)                                                                                                                                  taGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGtt                                                                         >  1:1387325/1‑74 (MQ=255)                                                                                                                                  taGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTT‑CCCCatat                                                               <  2:1181657/83‑1 (MQ=255)                                                                                                                                  taGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTT‑CCCCatat                                                               >  1:1181657/1‑83 (MQ=255)                                                                                                                                  taGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTT‑CCCCATATGTTTCTATGGGATCCAGGAAATGACAATCAGGAGTTACAAAAACTTAAATCTGGTc       >  2:1245960/1‑139 (MQ=255)                                                                                                                                  taGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTT‑CCCCATATGTTTCTATGGGATCCAGGAAATGACAATCAGGAGTTACAAAAACTTAAATCTGGTc       <  2:1171006/139‑1 (MQ=255)                                                                                                                                  taGTTGGAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTT‑CCCCATATGTTTCTATGGGATCCAGGAAATGACAATCAGGAGTTACAAAAACTTAAATCTGGTc       <  1:242039/139‑1 (MQ=255)                                                                                                                                       ggAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGtat                                                                                     <  2:1125010/57‑1 (MQ=255)                                                                                                                                       ggAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGtat                                                                                     >  1:1125010/1‑57 (MQ=255)                                                                                                                                       ggAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTT‑cccc                                                                   >  2:841421/1‑74 (MQ=255)                                                                                                                                       ggAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTT‑CCCCATATGTTTCTATGGGATCCAGGAAATGACAATCAGGAGTTACAAAAACTTAAATCTGGTCAGGGc  >  2:667956/1‑139 (MQ=255)                                                                                                                                       ggAGTG‑CCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTT‑CCCCATATGTTTCTATGGGATCCAGGAAATGACAATCAGGAGTTACAAAAACTTAAATCTGGTCAGGGc  >  1:1015407/1‑139 (MQ=255)                                                                                                                                             |                                                                                                                                       TTGTCTGCTGGCGAATAATTACTAAGTATCGAGTTGCTGCTTGGTGAGATCAGGAAGAGGTTACCGAAACGATGGACATCATCCCCCATTTTGTGGACTG‑‑CCCCCCCGGTAGACGATCCTG‑CCCTATAGTTGGAGTGCCCCCTATTCAGGTGGCTAAATTTAGCAAATCAATACACTTCAGGGGGGTATTATTGTAGAGTTT‑CCCCATATGTTTCTATGGGATCCAGGAAATGACAATCAGGAGTTACAAAAACTTAAATCTGGTCAGGGC  >  NC_000913/2765688‑2765958

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑